AT1G73875

Carbon catabolite repressor protein 4 homolog 5

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0003003
Physical Location & Seq
Forward (+)
27780855 .. 27784920
4066 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G73875.1

Sequence Viewer

Length: 1365 bp
ATGAGCGGATACGAGCGTAAGAACACGACGGCGAACTCAATCACCATCACCAAGCGGAAGCGTAACTCGATTTCGGAACAATCGGAGAACGTATACGAGAAATCGAATAGGAAGGAGTCAATAACCTTAAAACCTCACCGTTCTTTTACGCCGGGATTCAGCCAGCGTGATTGTAAACCTGTCAGACATAGTAAGTCTTCTCTCCGCCGGCGACGGAGAACTAAGGAGAAGATCTCGAGTTCCGTTGAGCGCGAATGGGTGTTTTCCGCAAACAATTTTGAAAATCTAGCAGATAAATTAGTATTAGTTTCGTACAATCTACTTGGTGTTGACAATGCGTCGAACCACATGGACTTGTATTACAATGTTCCGCGGAAGCACTTAGAGTGGAGTAGACGGAAACATCTCATATGCAAGGAGATTAGTCGTTACAATGCAAGCATCTTATGTCTTCAGGAGGTTGACCGCTTTGATGATTTAGATGTTCTTCTTAAAAATAGAGGATTTCGAGGTGTTCACAAGAGTCGGACTGGAGAAGCGAGTGATGGTTGTGCTATATTTTGGAAAGAGAATCTATTTGAACTTCTAGACCATCAACATATAGAGTTTGATAAATTTGGTATGCGAAACAATGTTGCTCAACTTTGTGTTTTAGAGATGAACTGTGAGGAGGACCCAAAGTCTAAATTACGGGTGCGATCATCAGATCCTCGAAGGCTAGTGGTTGGGAATATACATGTCCTATTCAATCCTAAGCGTGGGGATATCAAGCTTGGCCAGGTAAGACTCTTTCTGGAGAAGGCTTACAAGCTATCACAGGAATGGGGAAATATTCCTGTGGCGATTGCAGGTGATCTGAATAGCACTCCACAGAGTGCAATCTATGATTTCATAGCTTCAGCTGATTTGGATACACAACTTCACGATCGCAGGCAAATTTCTGGCCAGACTGAAGTGGAACCAAAGGAGAGGTCATTCAGAAACCATTATGCATTTAGTGCTTCAGCATCCATCTCCGGATCACTACTCAATGAGTGGAGCCAGGAAGAATTACAGCTTGCAACTGGTGGTCAAGAAACCACTCATGTCCAACATCAACTGAAGCTTAACAGCGCATATAGTGGAGTTCCTGGTACATATAGAACTAGAGATCAACGCGGTGAACCATTGGCAACAACGTATCATTCCAGGTTCCTTGGAACTGTTGATTATATATGGCATACCAAGGAACTCGTTCCTGTGAGGGTTCTTGAGACCTTGCCAGCAGATGTATTGAGAAGAACAGGTGGACTACCTAGTGAGAATTGGGGAAGCGACCATCTCGCTATCGCATGTGAACTCGGCTTTGTCAATGACTGGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exo_endo_phos

Protein Analysis

454

Amino Acids

52.15

Weight (kDa)

9.07

Isoelectric Point (pI)

46.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo_endo_phos PF03372 104 - 440 7.6e-19 Endonuclease/Exonuclease/phosphatase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 839
Acc36I ACCTGC 1 cut(s) 839
AccBSI CCGCTC 1 cut(s) 6
AccI GTMKAC 2 cut(s) 93, 394
AccII CGCG 3 cut(s) 252, 373, 1158
AccIII TCCGGA 1 cut(s) 1016
AciI CCGC 8 cut(s) 6, 55, 205, 267, 371, 373, 466, 1158
AclWI GGATC 2 cut(s) 701, 1027
AcoI YGGCCR 2 cut(s) 775, 943
AcsI RAATTY 2 cut(s) 614, 936
AcuI CTGAAG 5 cut(s) 437, 882, 972, 987, 1121
AdeI CACNNNGTG 1 cut(s) 875
AfaI GTAC 2 cut(s) 314, 1135
AfiI CCNNNNNNNGG 1 cut(s) 758
AflIII ACRYGT 1 cut(s) 736
AgsI TTSAA 3 cut(s) 281, 581, 748
AhdI GACNNNNNGTC 2 cut(s) 337, 679
AjnI CCWGG 4 cut(s) 777, 1041, 1129, 1187
AluBI AGCT 6 cut(s) 772, 811, 896, 902, 1057, 1105
AluI AGCT 6 cut(s) 772, 811, 896, 902, 1057, 1105
Alw26I GTCTC 1 cut(s) 1247
AlwI GGATC 2 cut(s) 701, 1027
Ama87I CYCGRG 1 cut(s) 235
Aor13HI TCCGGA 1 cut(s) 1016
AoxI GGCC 2 cut(s) 775, 943
ApoI RAATTY 2 cut(s) 614, 936
ArsI GACNNNNNNTTYG 2 cut(s) 956, 988
Asp700I GAANNNNTTC 1 cut(s) 1233
AspLEI GCGC 2 cut(s) 252, 1115
AspS9I GGNCC 1 cut(s) 673
AsuC2I CCSGG 1 cut(s) 153
AsuHPI GGTGA 5 cut(s) 34, 40, 128, 863, 1172
AvaI CYCGRG 1 cut(s) 235
AvaII GGWCC 1 cut(s) 673
BaeI ACNNNNGTAYC 1 cut(s) 34
BalI TGGCCA 2 cut(s) 777, 945
BbsI GAAGAC 2 cut(s) 189, 443
BccI CCATC 5 cut(s) 53, 539, 600, 1019, 1326
BceAI ACGGC 1 cut(s) 45
BciT130I CCWGG 4 cut(s) 779, 1043, 1131, 1189
BciVI GTATCC 1 cut(s) 904
BcnI CCSGG 1 cut(s) 153
BcoDI GTCTC 1 cut(s) 1247
BfaI CTAG 5 cut(s) 287, 587, 719, 1146, 1296
BfuAI ACCTGC 1 cut(s) 839
BfuI GTATCC 1 cut(s) 904
BglII AGATCT 1 cut(s) 231
Bme1390I CCNGG 5 cut(s) 153, 779, 1043, 1131, 1189
Bme18I GGWCC 1 cut(s) 673
BmeRI GACNNNNNGTC 2 cut(s) 337, 679
BmeT110I CYCGRG 1 cut(s) 235
BmgT120I GGNCC 1 cut(s) 673
BmiI GGNNCC 4 cut(s) 675, 960, 1040, 1193
BmrFI CCNGG 5 cut(s) 153, 779, 1043, 1131, 1189
BmsI GCATC 2 cut(s) 450, 1016
BpiI GAAGAC 2 cut(s) 189, 443
BplI GAGNNNNNCTC 2 cut(s) 218, 250
BpmI CTGGAG 2 cut(s) 552, 815
Bpu10I CCTNAGC 1 cut(s) 753
BpuEI CTTGAG 1 cut(s) 1271
BpuMI CCSGG 1 cut(s) 153
BsaI GGTCTC 1 cut(s) 1247
BsaJI CCNNGG 3 cut(s) 371, 1195, 1224
BsaWI WCCGGW 1 cut(s) 1016
Bsc4I CCNNNNNNNGG 1 cut(s) 758
Bse118I RCCGGY 1 cut(s) 207
Bse1I ACTGG 3 cut(s) 535, 1069, 1361
BseAI TCCGGA 1 cut(s) 1016
BseBI CCWGG 4 cut(s) 779, 1043, 1131, 1189
BseDI CCNNGG 3 cut(s) 371, 1195, 1224
BseGI GGATG 1 cut(s) 1007
BseLI CCNNNNNNNGG 1 cut(s) 758
BseNI ACTGG 3 cut(s) 535, 1069, 1361
BseRI GAGGAG 1 cut(s) 683
Bsh1236I CGCG 3 cut(s) 252, 373, 1158
Bsh1285I CGRYCG 1 cut(s) 928
BshFI GGCC 2 cut(s) 777, 945
BsiEI CGRYCG 1 cut(s) 928
BsiHKCI CYCGRG 1 cut(s) 235
BsiSI CCGG 3 cut(s) 152, 208, 1017
BslI CCNNNNNNNGG 1 cut(s) 758
BsmAI GTCTC 1 cut(s) 1247
BsnI GGCC 2 cut(s) 777, 945
Bso31I GGTCTC 1 cut(s) 1247
BsoBI CYCGRG 1 cut(s) 235
Bsp13I TCCGGA 1 cut(s) 1016
Bsp143I GATC 7 cut(s) 231, 698, 706, 853, 925, 1019, 1150
BspACI CCGC 8 cut(s) 6, 55, 205, 267, 371, 373, 466, 1158
BspANI GGCC 2 cut(s) 777, 945
BspEI TCCGGA 1 cut(s) 1016
BspFNI CGCG 3 cut(s) 252, 373, 1158
BspLI GGNNCC 4 cut(s) 675, 960, 1040, 1193
BspMI ACCTGC 1 cut(s) 839
BspPI GGATC 2 cut(s) 701, 1027
BspTNI GGTCTC 1 cut(s) 1247
BsrBI CCGCTC 1 cut(s) 6
BsrFI RCCGGY 1 cut(s) 207
BsrI ACTGG 3 cut(s) 535, 1069, 1361
BssAI RCCGGY 1 cut(s) 207
BssECI CCNNGG 3 cut(s) 371, 1195, 1224
BssMI GATC 7 cut(s) 231, 698, 706, 853, 925, 1019, 1150
BssNAI GTATAC 1 cut(s) 94
BssT1I CCWWGG 2 cut(s) 1195, 1224
Bst1107I GTATAC 1 cut(s) 94
Bst2UI CCWGG 4 cut(s) 779, 1043, 1131, 1189
Bst4CI ACNGT 3 cut(s) 140, 665, 1204
BstAPI GCANNNNNTGC 1 cut(s) 998
BstC8I GCNNGC 6 cut(s) 164, 209, 439, 932, 1059, 1263
BstDEI CTNAG 3 cut(s) 222, 382, 753
BstDSI CCRYGG 1 cut(s) 371
BstF5I GGATG 1 cut(s) 1007
BstFNI CGCG 3 cut(s) 252, 373, 1158
BstHHI GCGC 2 cut(s) 252, 1115
BstKTI GATC 7 cut(s) 234, 701, 709, 856, 928, 1022, 1153
BstMAI GTCTC 1 cut(s) 1247
BstMBI GATC 7 cut(s) 231, 698, 706, 853, 925, 1019, 1150
BstMCI CGRYCG 1 cut(s) 928
BstMWI GCNNNNNNNGC 1 cut(s) 998
BstNI CCWGG 4 cut(s) 779, 1043, 1131, 1189
BstNSI RCATGY 2 cut(s) 740, 1335
BstSCI CCNGG 5 cut(s) 151, 777, 1041, 1129, 1187
BstUI CGCG 3 cut(s) 252, 373, 1158
BstV2I GAAGAC 2 cut(s) 189, 443
BstX2I RGATCY 2 cut(s) 231, 706
BstYI RGATCY 2 cut(s) 231, 706
BstZ17I GTATAC 1 cut(s) 94
BsuI GTATCC 1 cut(s) 904
BsuRI GGCC 2 cut(s) 777, 945
BtgI CCRYGG 1 cut(s) 371
BtsCI GGATG 1 cut(s) 1007
BveI ACCTGC 1 cut(s) 839
Cac8I GCNNGC 6 cut(s) 164, 209, 439, 932, 1059, 1263
CfoI GCGC 2 cut(s) 252, 1115
Cfr10I RCCGGY 1 cut(s) 207
Cfr13I GGNCC 1 cut(s) 673
Cfr42I CCGCGG 1 cut(s) 374
CseI GACGC 1 cut(s) 327
Csp6I GTAC 2 cut(s) 313, 1134
CviAII CATG 4 cut(s) 349, 737, 1085, 1332
CviQI GTAC 2 cut(s) 313, 1134
DdeI CTNAG 3 cut(s) 222, 382, 753
DpnI GATC 7 cut(s) 233, 700, 708, 855, 927, 1021, 1152
DpnII GATC 7 cut(s) 231, 698, 706, 853, 925, 1019, 1150
DraIII CACNNNGTG 1 cut(s) 875
DriI GACNNNNNGTC 2 cut(s) 337, 679
EaeI YGGCCR 2 cut(s) 775, 943
Eam1105I GACNNNNNGTC 2 cut(s) 337, 679
EciI GGCGGA 1 cut(s) 194
Eco130I CCWWGG 2 cut(s) 1195, 1224
Eco31I GGTCTC 1 cut(s) 1247
Eco32I GATATC 1 cut(s) 766
Eco47I GGWCC 1 cut(s) 673
Eco57I CTGAAG 5 cut(s) 437, 882, 972, 987, 1121
Eco88I CYCGRG 1 cut(s) 235
EcoO109I RGGNCCY 1 cut(s) 673
EcoRII CCWGG 4 cut(s) 777, 1041, 1129, 1187
EcoRV GATATC 1 cut(s) 766
EcoT14I CCWWGG 2 cut(s) 1195, 1224
EcoT22I ATGCAT 1 cut(s) 994
ErhI CCWWGG 2 cut(s) 1195, 1224
FaeI CATG 4 cut(s) 352, 740, 1088, 1335
FatI CATG 4 cut(s) 348, 736, 1084, 1331
FauNDI CATATG 1 cut(s) 410
FblI GTMKAC 2 cut(s) 93, 394
FokI GGATG 1 cut(s) 994
FspBI CTAG 5 cut(s) 287, 587, 719, 1146, 1296
GlaI GCGC 2 cut(s) 251, 1114
GsuI CTGGAG 2 cut(s) 552, 815
HaeIII GGCC 2 cut(s) 777, 945
HapII CCGG 3 cut(s) 152, 208, 1017
HgaI GACGC 1 cut(s) 327
HhaI GCGC 2 cut(s) 252, 1115
Hin1II CATG 4 cut(s) 352, 740, 1088, 1335
Hin6I GCGC 2 cut(s) 250, 1113
HinP1I GCGC 2 cut(s) 250, 1113
HincII GTYRAC 2 cut(s) 331, 463
HindII GTYRAC 2 cut(s) 331, 463
HindIII AAGCTT 2 cut(s) 770, 1103
HinfI GANTC 5 cut(s) 116, 156, 523, 571, 786
HpaII CCGG 3 cut(s) 152, 208, 1017
HphI GGTGA 5 cut(s) 34, 40, 128, 863, 1172
Hpy166II GTNNAC 9 cut(s) 94, 176, 331, 395, 463, 517, 1163, 1289, 1337
Hpy188I TCNGA 7 cut(s) 76, 85, 185, 528, 706, 858, 980
Hpy188III TCNNGA 8 cut(s) 235, 455, 587, 794, 923, 1017, 1073, 1250
Hpy8I GTNNAC 9 cut(s) 94, 176, 331, 395, 463, 517, 1163, 1289, 1337
Hpy99I CGWCG 3 cut(s) 31, 216, 343
HpyAV CCTTC 3 cut(s) 106, 708, 793
HpyCH4III ACNGT 3 cut(s) 140, 665, 1204
HpyCH4IV ACGT 2 cut(s) 90, 1178
HpyCH4V TGCA 6 cut(s) 414, 437, 848, 878, 992, 1061
HpyF10VI GCNNNNNNNGC 1 cut(s) 998
HpyF3I CTNAG 3 cut(s) 222, 382, 753
HpySE526I ACGT 2 cut(s) 90, 1178
Hsp92II CATG 4 cut(s) 352, 740, 1088, 1335
HspAI GCGC 2 cut(s) 250, 1113
Kpn2I TCCGGA 1 cut(s) 1016
KroI GCCGGC 1 cut(s) 207
KroNI GCCGGC 1 cut(s) 209
KspI CCGCGG 1 cut(s) 374
Kzo9I GATC 7 cut(s) 231, 698, 706, 853, 925, 1019, 1150
LmnI GCTCC 1 cut(s) 1038
LweI GCATC 2 cut(s) 450, 1016
MaeI CTAG 5 cut(s) 287, 587, 719, 1146, 1296
MaeII ACGT 2 cut(s) 90, 1178
MaeIII GTNAC 2 cut(s) 62, 428
MalI GATC 7 cut(s) 233, 700, 708, 855, 927, 1021, 1152
MbiI CCGCTC 1 cut(s) 6
MboI GATC 7 cut(s) 231, 698, 706, 853, 925, 1019, 1150
MboII GAAGA 6 cut(s) 189, 241, 443, 479, 1058, 1290
MflI RGATCY 2 cut(s) 231, 706
MlsI TGGCCA 2 cut(s) 777, 945
MluCI AATT 7 cut(s) 274, 296, 614, 686, 936, 1049, 1303
MluNI TGGCCA 2 cut(s) 777, 945
MlyI GAGTC 3 cut(s) 125, 532, 780
MmeI TCCRAC 2 cut(s) 506, 1114
MnlI CCTC 9 cut(s) 144, 451, 494, 503, 661, 664, 720, 963, 1236
Mox20I TGGCCA 2 cut(s) 777, 945
Mph1103I ATGCAT 1 cut(s) 994
MreI CGCCGGCG 1 cut(s) 207
MroI TCCGGA 1 cut(s) 1016
MroNI GCCGGC 1 cut(s) 207
MroXI GAANNNNTTC 1 cut(s) 1233
MscI TGGCCA 2 cut(s) 777, 945
MseI TTAA 3 cut(s) 128, 492, 1107
MslI CAYNNNNRTG 1 cut(s) 820
Msp20I TGGCCA 2 cut(s) 777, 945
MspA1I CMGCKG 2 cut(s) 373, 902
MspI CCGG 3 cut(s) 152, 208, 1017
MspR9I CCNGG 5 cut(s) 153, 779, 1043, 1131, 1189
MvaI CCWGG 4 cut(s) 779, 1043, 1131, 1189
MvnI CGCG 3 cut(s) 252, 373, 1158
MwoI GCNNNNNNNGC 1 cut(s) 998
NaeI GCCGGC 1 cut(s) 209
NciI CCSGG 1 cut(s) 153
NdeI CATATG 1 cut(s) 410
NdeII GATC 7 cut(s) 231, 698, 706, 853, 925, 1019, 1150
NgoMIV GCCGGC 1 cut(s) 207
NlaIII CATG 4 cut(s) 352, 740, 1088, 1335
NlaIV GGNNCC 4 cut(s) 675, 960, 1040, 1193
NmeAIII GCCGAG 1 cut(s) 1320
NsiI ATGCAT 1 cut(s) 994
NspI RCATGY 2 cut(s) 740, 1335
PaeR7I CTCGAG 1 cut(s) 235
PaqCI CACCTGC 1 cut(s) 839
PciI ACATGT 1 cut(s) 736
PdiI GCCGGC 1 cut(s) 209
PdmI GAANNNNTTC 1 cut(s) 1233
PfeI GAWTC 2 cut(s) 156, 571
Ple19I CGATCG 1 cut(s) 928
PleI GAGTC 3 cut(s) 124, 531, 780
PpsI GAGTC 3 cut(s) 124, 531, 780
PpuMI RGGWCCY 1 cut(s) 673
PscI ACATGT 1 cut(s) 736
Psp5II RGGWCCY 1 cut(s) 673
Psp6I CCWGG 4 cut(s) 777, 1041, 1129, 1187
PspGI CCWGG 4 cut(s) 777, 1041, 1129, 1187
PspN4I GGNNCC 4 cut(s) 675, 960, 1040, 1193
PspPI GGNCC 1 cut(s) 673
PspPPI RGGWCCY 1 cut(s) 673
PsuI RGATCY 2 cut(s) 231, 706
PvuI CGATCG 1 cut(s) 928
PvuII CAGCTG 1 cut(s) 902
RsaI GTAC 2 cut(s) 314, 1135
RsaNI GTAC 2 cut(s) 313, 1134
RseI CAYNNNNRTG 1 cut(s) 820
SacII CCGCGG 1 cut(s) 374
SaqAI TTAA 3 cut(s) 128, 492, 1107
Sau3AI GATC 7 cut(s) 231, 698, 706, 853, 925, 1019, 1150
Sau96I GGNCC 1 cut(s) 673
SchI GAGTC 3 cut(s) 125, 532, 780
ScrFI CCNGG 5 cut(s) 153, 779, 1043, 1131, 1189
SfaNI GCATC 2 cut(s) 450, 1016
Sfr274I CTCGAG 1 cut(s) 235
Sfr303I CCGCGG 1 cut(s) 374
SgrAI CRCCGGYG 1 cut(s) 207
SgrBI CCGCGG 1 cut(s) 374
SinI GGWCC 1 cut(s) 673
SlaI CTCGAG 1 cut(s) 235
SmiMI CAYNNNNRTG 1 cut(s) 820
SmlI CTYRAG 2 cut(s) 235, 1250
SmoI CTYRAG 2 cut(s) 235, 1250
Sse9I AATT 7 cut(s) 274, 296, 614, 686, 936, 1049, 1303
SsiI CCGC 8 cut(s) 6, 55, 205, 267, 371, 373, 466, 1158
SspI AATATT 1 cut(s) 832
SspMI CTAG 5 cut(s) 287, 587, 719, 1146, 1296
StyD4I CCNGG 5 cut(s) 151, 777, 1041, 1129, 1187
StyI CCWWGG 2 cut(s) 1195, 1224
TaaI ACNGT 3 cut(s) 140, 665, 1204
TaiI ACGT 2 cut(s) 93, 1181
TaqI TCGA 6 cut(s) 68, 104, 236, 341, 508, 712
TasI AATT 7 cut(s) 274, 296, 614, 686, 936, 1049, 1303
TfiI GAWTC 2 cut(s) 156, 571
Tru1I TTAA 3 cut(s) 128, 492, 1107
Tru9I TTAA 3 cut(s) 128, 492, 1107
TspDTI ATGAA 2 cut(s) 674, 880
TspGWI ACGGA 3 cut(s) 229, 232, 412
VpaK11BI GGWCC 1 cut(s) 673
XapI RAATTY 2 cut(s) 614, 936
XbaI TCTAGA 1 cut(s) 586
XceI RCATGY 2 cut(s) 740, 1335
XhoI CTCGAG 1 cut(s) 235
XmiI GTMKAC 2 cut(s) 93, 394
XmnI GAANNNNTTC 1 cut(s) 1233
XspI CTAG 5 cut(s) 287, 587, 719, 1146, 1296
Zsp2I ATGCAT 1 cut(s) 994
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.