Rw7G006090

Carbon catabolite repressor protein 4 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0003003
Physical Location & Seq
Reverse (-)
5135701 .. 5139139
3439 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G006090.1

Sequence Viewer

Length: 1263 bp
ATGGAAGAAACCATCAACGTACTGCGTCCCAAGCGTAAACATTCACTAAACACTGAAGCAGAACAACCTGAGCCTCACAAAAGGAGGCGCAGAACTGTGGAGTCCGAAACCGAACCGCTAACCCGACAACCCGACCCGTCATCTTCAAATCGGTTCCGACTCTTGTCTTGTCCATCTCCCAAGAAAGAAACACAAAGCTCTCGGGAATGGGTCTGCAACTCTTCCACTTCTTCTGCCTATGGAGAGAAGTTTGTGGTCGTTTCTTATAACATTCTGGGTGTTGAAAATGCATCCAATCACTCAGATATGTATAATAATGTGCCACCCAGATACATGAAGTGGAAGCGTCGCAGGAGGCTTATACGAAAGGAGGTCAATAGTTACAATGCTAGCATTGTATGTTTTCAGGAGGTCGATCGTTTCGATGATTTAGCTCATAAGTTCCAGAAAGATGGGTTCGAAGGTGTGTACAAGGCACGCACTGGTGAAGTAAGTGATGGATGTGCTATATTTTGGAAACAGGACATGTTTAGCCTTTTGCATCAAGAAAGTATAGAGTTCCAAAGTTTTGGCCTTCGTCATAATGTTGCTCAATTTTGTGTTTTAAAGTTGCAAGATCAATTAGAGTCAGATGTACCTCCTGATACATCAATGAGGCCATGTACCCGAAGTAGAAGCTTAGTGATTGGGAATATACATGTCCTATTCAACCCTAGCCGTGGAGATATCAAGCTAGGGCAGGTTCGACTGTTTCTTGAAAAAGCTTACAAGCTATCACTAGAGTGGGGATCTATCCCTGTTATAATGGCTGGGGATCTAAATAGCACTCCACAGAGTCCTATTTACCAGTTTCTAGCTTCATCTCAGTTAGACATCCAACGACATGACCGCAGACGTGTCTCAGGACAGATTGAATTTGAATCGCAGTACAGAACCTTCACATGGAGTGCGGAAGAAGTAAGGCTTGCAACGGGCTGTGAAGAAGTCACTCATCTCCAACACCATCTAAAGCTTGGCAGTGCATATCTTGGAGTACCTGGTAGTCGCAGAACAAGAGATAGGTGTGGAGAACCCTTGGCAACATCATACCACTCCAAGTTTTTGGGAACTGTTGATTATATATGGCATACGGAGGAGCTTGTTCCGGTCAGAGTTCTTGAAACGTTACCCATCGACACTTTAAAAGGAATGGGAGGACTCCCCAGCAAGAGATGGGGGAGCGATCATCTTGCTCTTGTATGTGAACTGGCTTTCCGTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exo_endo_phos

Protein Analysis

420

Amino Acids

48.32

Weight (kDa)

8.95

Isoelectric Point (pI)

66.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo_endo_phos PF03372 88 - 409 1.2e-17 Endonuclease/Exonuclease/phosphatase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 267, 803
Acc36I ACCTGC 1 cut(s) 730
AciI CCGC 3 cut(s) 116, 889, 950
AclI AACGTT 1 cut(s) 1163
AclWI GGATC 2 cut(s) 796, 822
AcsI RAATTY 1 cut(s) 914
AcuI CTGAAG 1 cut(s) 75
AfaI GTAC 6 cut(s) 21, 470, 636, 664, 929, 1035
AfiI CCNNNNNNNGG 2 cut(s) 719, 942
AflIII ACRYGT 3 cut(s) 525, 697, 895
AgsI TTSAA 7 cut(s) 147, 284, 709, 758, 914, 920, 1160
AjiI CACGTC 1 cut(s) 896
AjnI CCWGG 1 cut(s) 1036
AleI CACNNNNGTG 1 cut(s) 781
AloI GAACNNNNNNTCC 1 cut(s) 1236
AluBI AGCT 9 cut(s) 198, 434, 678, 733, 764, 772, 857, 1012, 1138
AluI AGCT 9 cut(s) 198, 434, 678, 733, 764, 772, 857, 1012, 1138
Alw26I GTCTC 1 cut(s) 904
AlwI GGATC 2 cut(s) 796, 822
Ama87I CYCGRG 1 cut(s) 201
AoxI GGCC 2 cut(s) 571, 656
ApoI RAATTY 1 cut(s) 914
AspLEI GCGC 1 cut(s) 90
AsuHPI GGTGA 1 cut(s) 497
AsuII TTCGAA 1 cut(s) 459
AsuNHI GCTAGC 1 cut(s) 389
AvaI CYCGRG 1 cut(s) 201
BarI GAAGNNNNNNTAC 2 cut(s) 920, 952
BccI CCATC 7 cut(s) 20, 181, 446, 491, 1011, 1178, 1206
BceAI ACGGC 1 cut(s) 702
BcgI CGANNNNNNTGC 2 cut(s) 1211, 1245
BciT130I CCWGG 1 cut(s) 1038
BcoDI GTCTC 1 cut(s) 904
BfaI CTAG 5 cut(s) 390, 714, 734, 779, 854
BfuAI ACCTGC 1 cut(s) 730
Bme1390I CCNGG 1 cut(s) 1038
BmeT110I CYCGRG 1 cut(s) 201
BmgBI CACGTC 1 cut(s) 896
BmiI GGNNCC 1 cut(s) 155
BmrFI CCNGG 1 cut(s) 1038
BmsI GCATC 2 cut(s) 299, 550
BmtI GCTAGC 1 cut(s) 393
BoxI GACNNNNGTC 1 cut(s) 163
Bpu10I CCTNAGC 1 cut(s) 69
Bpu14I TTCGAA 1 cut(s) 459
BsaJI CCNNGG 2 cut(s) 718, 1074
BsaWI WCCGGW 1 cut(s) 1144
Bsc4I CCNNNNNNNGG 2 cut(s) 719, 942
Bse1I ACTGG 3 cut(s) 487, 847, 1251
BseBI CCWGG 1 cut(s) 1038
BseDI CCNNGG 2 cut(s) 718, 1074
BseGI GGATG 3 cut(s) 290, 506, 873
BseLI CCNNNNNNNGG 2 cut(s) 719, 942
BseMII CTCAG 4 cut(s) 60, 315, 878, 915
BseNI ACTGG 3 cut(s) 487, 847, 1251
BseRI GAGGAG 1 cut(s) 1148
BseYI CCCAGC 2 cut(s) 809, 1202
Bsh1285I CGRYCG 1 cut(s) 418
BshFI GGCC 2 cut(s) 573, 658
BsiEI CGRYCG 1 cut(s) 418
BsiHKCI CYCGRG 1 cut(s) 201
BsiSI CCGG 1 cut(s) 1145
BslFI GGGAC 1 cut(s) 12
BslI CCNNNNNNNGG 2 cut(s) 719, 942
BsmAI GTCTC 1 cut(s) 904
BsmFI GGGAC 1 cut(s) 12
BsnI GGCC 2 cut(s) 573, 658
BsoBI CYCGRG 1 cut(s) 201
Bsp119I TTCGAA 1 cut(s) 459
Bsp1407I TGTACA 1 cut(s) 468
Bsp143I GATC 5 cut(s) 415, 616, 788, 814, 1222
BspACI CCGC 3 cut(s) 116, 889, 950
BspANI GGCC 2 cut(s) 573, 658
BspCNI CTCAG 4 cut(s) 61, 314, 877, 914
BspLI GGNNCC 1 cut(s) 155
BspMI ACCTGC 1 cut(s) 730
BspOI GCTAGC 1 cut(s) 393
BspPI GGATC 2 cut(s) 796, 822
BspT104I TTCGAA 1 cut(s) 459
BsrGI TGTACA 1 cut(s) 468
BsrI ACTGG 3 cut(s) 487, 847, 1251
BssECI CCNNGG 2 cut(s) 718, 1074
BssMI GATC 5 cut(s) 415, 616, 788, 814, 1222
BssT1I CCWWGG 1 cut(s) 1074
Bst2UI CCWGG 1 cut(s) 1038
Bst4CI ACNGT 3 cut(s) 97, 750, 1111
Bst6I CTCTTC 1 cut(s) 226
BstAUI TGTACA 1 cut(s) 468
BstBI TTCGAA 1 cut(s) 459
BstC8I GCNNGC 3 cut(s) 391, 478, 966
BstDEI CTNAG 5 cut(s) 69, 301, 679, 864, 901
BstDSI CCRYGG 1 cut(s) 718
BstF5I GGATG 3 cut(s) 290, 506, 873
BstHHI GCGC 1 cut(s) 90
BstKTI GATC 5 cut(s) 418, 619, 791, 817, 1225
BstMAI GTCTC 1 cut(s) 904
BstMBI GATC 5 cut(s) 415, 616, 788, 814, 1222
BstMCI CGRYCG 1 cut(s) 418
BstMWI GCNNNNNNNGC 1 cut(s) 31
BstNI CCWGG 1 cut(s) 1038
BstNSI RCATGY 2 cut(s) 529, 701
BstPAI GACNNNNGTC 1 cut(s) 163
BstSCI CCNGG 1 cut(s) 1036
BstX2I RGATCY 2 cut(s) 788, 814
BstXI CCANNNNNNTGG 3 cut(s) 452, 569, 1102
BstYI RGATCY 2 cut(s) 788, 814
BsuRI GGCC 2 cut(s) 573, 658
BtgI CCRYGG 1 cut(s) 718
BtrI CACGTC 1 cut(s) 896
BtsCI GGATG 3 cut(s) 290, 506, 873
BtsI GCAGTG 1 cut(s) 1024
BtsIMutI CAGTG 3 cut(s) 51, 480, 1024
BveI ACCTGC 1 cut(s) 730
Cac8I GCNNGC 3 cut(s) 391, 478, 966
CfoI GCGC 1 cut(s) 90
CseI GACGC 2 cut(s) 14, 335
CsiI ACCWGGT 1 cut(s) 1036
Csp6I GTAC 6 cut(s) 20, 469, 635, 663, 928, 1034
CviAII CATG 6 cut(s) 334, 526, 660, 698, 884, 942
CviQI GTAC 6 cut(s) 20, 469, 635, 663, 928, 1034
DdeI CTNAG 5 cut(s) 69, 301, 679, 864, 901
DpnI GATC 5 cut(s) 417, 618, 790, 816, 1224
DpnII GATC 5 cut(s) 415, 616, 788, 814, 1222
DraI TTTAAA 2 cut(s) 606, 1182
Eam1104I CTCTTC 1 cut(s) 226
EarI CTCTTC 1 cut(s) 226
Eco130I CCWWGG 1 cut(s) 1074
Eco32I GATATC 1 cut(s) 727
Eco57I CTGAAG 1 cut(s) 75
Eco88I CYCGRG 1 cut(s) 201
EcoRII CCWGG 1 cut(s) 1036
EcoRV GATATC 1 cut(s) 727
EcoT14I CCWWGG 1 cut(s) 1074
EcoT22I ATGCAT 1 cut(s) 292
ErhI CCWWGG 1 cut(s) 1074
FaeI CATG 6 cut(s) 337, 529, 663, 701, 887, 945
FalI AAGNNNNNCTT 2 cut(s) 948, 980
FaqI GGGAC 1 cut(s) 12
FatI CATG 6 cut(s) 333, 525, 659, 697, 883, 941
FokI GGATG 3 cut(s) 277, 513, 860
FspBI CTAG 5 cut(s) 390, 714, 734, 779, 854
GlaI GCGC 1 cut(s) 89
GsaI CCCAGC 2 cut(s) 813, 1206
HaeIII GGCC 2 cut(s) 573, 658
HapII CCGG 1 cut(s) 1145
HgaI GACGC 2 cut(s) 14, 335
HhaI GCGC 1 cut(s) 90
Hin1II CATG 6 cut(s) 337, 529, 663, 701, 887, 945
Hin6I GCGC 1 cut(s) 88
HinP1I GCGC 1 cut(s) 88
HindIII AAGCTT 3 cut(s) 676, 762, 1010
HinfI GANTC 6 cut(s) 101, 159, 626, 835, 920, 1197
HpaII CCGG 1 cut(s) 1145
HphI GGTGA 1 cut(s) 497
Hpy166II GTNNAC 3 cut(s) 38, 469, 1244
Hpy188I TCNGA 5 cut(s) 106, 158, 304, 631, 1151
Hpy188III TCNNGA 8 cut(s) 203, 407, 445, 545, 641, 755, 903, 1157
Hpy8I GTNNAC 3 cut(s) 38, 469, 1244
Hpy99I CGWCG 1 cut(s) 351
HpyAV CCTTC 3 cut(s) 455, 584, 946
HpyCH4III ACNGT 3 cut(s) 97, 750, 1111
HpyCH4IV ACGT 3 cut(s) 18, 895, 1163
HpyCH4V TGCA 6 cut(s) 216, 290, 541, 613, 968, 1022
HpyF10VI GCNNNNNNNGC 1 cut(s) 31
HpyF3I CTNAG 5 cut(s) 69, 301, 679, 864, 901
HpySE526I ACGT 3 cut(s) 18, 895, 1163
Hsp92II CATG 6 cut(s) 337, 529, 663, 701, 887, 945
HspAI GCGC 1 cut(s) 88
Kzo9I GATC 5 cut(s) 415, 616, 788, 814, 1222
LmnI GCTCC 2 cut(s) 1135, 1218
LweI GCATC 2 cut(s) 299, 550
MabI ACCWGGT 1 cut(s) 1036
MaeI CTAG 5 cut(s) 390, 714, 734, 779, 854
MaeII ACGT 3 cut(s) 18, 895, 1163
MaeIII GTNAC 3 cut(s) 380, 985, 1164
MalI GATC 5 cut(s) 417, 618, 790, 816, 1224
MboI GATC 5 cut(s) 415, 616, 788, 814, 1222
MboII GAAGA 6 cut(s) 17, 135, 213, 222, 965, 992
MflI RGATCY 2 cut(s) 788, 814
MluCI AATT 3 cut(s) 593, 620, 914
MlyI GAGTC 5 cut(s) 110, 153, 635, 844, 1191
MmeI TCCRAC 3 cut(s) 181, 901, 1021
MnlI CCTC 9 cut(s) 78, 84, 348, 364, 403, 648, 648, 1126, 1187
Mph1103I ATGCAT 1 cut(s) 292
MseI TTAA 2 cut(s) 605, 1181
MslI CAYNNNNRTG 1 cut(s) 781
MspI CCGG 1 cut(s) 1145
MspR9I CCNGG 1 cut(s) 1038
MvaI CCWGG 1 cut(s) 1038
MwoI GCNNNNNNNGC 1 cut(s) 31
NdeII GATC 5 cut(s) 415, 616, 788, 814, 1222
NheI GCTAGC 1 cut(s) 389
NlaIII CATG 6 cut(s) 337, 529, 663, 701, 887, 945
NlaIV GGNNCC 1 cut(s) 155
NmuCI GTSAC 1 cut(s) 985
NsiI ATGCAT 1 cut(s) 292
NspI RCATGY 2 cut(s) 529, 701
NspV TTCGAA 1 cut(s) 459
OliI CACNNNNGTG 1 cut(s) 781
PciI ACATGT 2 cut(s) 525, 697
PcsI WCGNNNNNNNCGW 1 cut(s) 420
PfeI GAWTC 1 cut(s) 920
Ple19I CGATCG 1 cut(s) 418
PleI GAGTC 5 cut(s) 109, 153, 634, 843, 1191
PpsI GAGTC 5 cut(s) 109, 153, 634, 843, 1191
PscI ACATGT 2 cut(s) 525, 697
PshAI GACNNNNGTC 1 cut(s) 163
PsiI TTATAA 2 cut(s) 267, 803
Psp1406I AACGTT 1 cut(s) 1163
Psp6I CCWGG 1 cut(s) 1036
PspFI CCCAGC 2 cut(s) 809, 1202
PspGI CCWGG 1 cut(s) 1036
PspN4I GGNNCC 1 cut(s) 155
PsuI RGATCY 2 cut(s) 788, 814
PvuI CGATCG 1 cut(s) 418
RsaI GTAC 6 cut(s) 21, 470, 636, 664, 929, 1035
RsaNI GTAC 6 cut(s) 20, 469, 635, 663, 928, 1034
RseI CAYNNNNRTG 1 cut(s) 781
SaqAI TTAA 2 cut(s) 605, 1181
Sau3AI GATC 5 cut(s) 415, 616, 788, 814, 1222
SchI GAGTC 5 cut(s) 110, 153, 635, 844, 1191
ScrFI CCNGG 1 cut(s) 1038
SexAI ACCWGGT 1 cut(s) 1036
SfaNI GCATC 2 cut(s) 299, 550
SfuI TTCGAA 1 cut(s) 459
SmiMI CAYNNNNRTG 1 cut(s) 781
Sse9I AATT 3 cut(s) 593, 620, 914
SsiI CCGC 3 cut(s) 116, 889, 950
SspMI CTAG 5 cut(s) 390, 714, 734, 779, 854
StyD4I CCNGG 1 cut(s) 1036
StyI CCWWGG 1 cut(s) 1074
TaaI ACNGT 3 cut(s) 97, 750, 1111
TaiI ACGT 3 cut(s) 21, 898, 1166
TaqI TCGA 5 cut(s) 414, 423, 459, 745, 1173
TasI AATT 3 cut(s) 593, 620, 914
TatI WGTACW 2 cut(s) 468, 927
TfiI GAWTC 1 cut(s) 920
Tru1I TTAA 2 cut(s) 605, 1181
Tru9I TTAA 2 cut(s) 605, 1181
TscAI CASTG 3 cut(s) 58, 487, 1024
TseFI GTSAC 1 cut(s) 985
Tsp45I GTSAC 1 cut(s) 985
TspDTI ATGAA 2 cut(s) 350, 849
TspGWI ACGGA 2 cut(s) 1145, 1244
TspRI CASTG 3 cut(s) 58, 487, 1024
XapI RAATTY 1 cut(s) 914
XceI RCATGY 2 cut(s) 529, 701
XcmI CCANNNNNNNNNTGG 1 cut(s) 1010
XspI CTAG 5 cut(s) 390, 714, 734, 779, 854
Zsp2I ATGCAT 1 cut(s) 292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.