Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0038524.1

Orthogroup ID

OG0003003

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 671

Gene Structure 671 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0038524.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

gcaacgggctgtgaagaagtcactcatctccaacaccatctaaagcttggcagtgcatatcttggagtacctggtagtcgcagaacaagagataggtgtggagaacccttggcaacatcataccactccaagtttttgggaactgttgattatatatggcatacggaggagcttgttccggtcagagttcttgaaacgttacccatcgacactttaaaaggaatgggaggactccccagcaaggtaccacctgtcgccaattcttttgtgcatcatcagtcacatagactggagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

98

Amino Acids

10.86

Weight (kDa)

7.29

Isoelectric Point (pI)

46.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003003)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73875 AT1G73875 AT1G73875
fragaria_vesca	FvH4_5g12230 FvH4_5g12230 FvH4_5g12230 FvH4_5g12230 FvH4_5g12230 FvH4_5g12230 FvH4_5g12230 FvH4_5g12230
malus_domestica	MD06G1215600.v1.1
prunus_persica	Prupe.5G220800_v2.0.a1 Prupe.5G220800_v2.0.a1 Prupe.5G220800_v2.0.a1 Prupe.5G220800_v2.0.a1 Prupe.5G220800_v2.0.a1 Prupe.5G220800_v2.0.a1 Prupe.5G220800_v2.0.a1 Prupe.5G220800_v2.0.a1 Prupe.5G220800_v2.0.a1 Prupe.5G220800_v2.0.a1 Prupe.5G220800_v2.0.a1 Prupe.5G220800_v2.0.a1
pyrus_communis	pycom06g19230
rosa_chinensis	RchiOBHm_Chr7g0185351
rosa_laevigata	RLG00000004920
rosa_multiflora	Rmu_co8209176.1_g000001 Rmu_sc0001761.1_g000015 Rmu_sc0008496.1_g000004 Rmu_sc0038524.1_g000001
rosa_roxburghii	Rroxscaffold_3G00269030
rosa_rugosa	Rorug06G0468200
rosa_samantha	Rh7AG074500 Rh7BG072700 Rh7CG073700 Rh7DG073300
rosa_wichuraiana	Rw7G006090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	244
AccB1I	GGYRCC	1 cut(s)	244
AclI	AACGTT	1 cut(s)	197
AfaI	GTAC	2 cut(s)	69, 246
AfiI	CCNNNNNNNGG	1 cut(s)	241
AgsI	TTSAA	1 cut(s)	194
AjnI	CCWGG	1 cut(s)	70
AluBI	AGCT	2 cut(s)	46, 172
AluI	AGCT	2 cut(s)	46, 172
Asp718I	GGTACC	1 cut(s)	244
BanI	GGYRCC	1 cut(s)	244
BccI	CCATC	2 cut(s)	45, 212
BciT130I	CCWGG	1 cut(s)	72
Bme1390I	CCNGG	1 cut(s)	72
BmiI	GGNNCC	1 cut(s)	246
BmrFI	CCNGG	1 cut(s)	72
BmsI	GCATC	1 cut(s)	280
BsaJI	CCNNGG	1 cut(s)	108
BsaWI	WCCGGW	1 cut(s)	178
Bsc4I	CCNNNNNNNGG	1 cut(s)	241
Bse1I	ACTGG	1 cut(s)	294
BseBI	CCWGG	1 cut(s)	72
BseDI	CCNNGG	1 cut(s)	108
BseLI	CCNNNNNNNGG	1 cut(s)	241
BseNI	ACTGG	1 cut(s)	294
BseRI	GAGGAG	1 cut(s)	182
BseYI	CCCAGC	1 cut(s)	236
BshNI	GGYRCC	1 cut(s)	244
BsiSI	CCGG	1 cut(s)	179
BslI	CCNNNNNNNGG	1 cut(s)	241
BspLI	GGNNCC	1 cut(s)	246
BspT107I	GGYRCC	1 cut(s)	244
BsrI	ACTGG	1 cut(s)	294
BssECI	CCNNGG	1 cut(s)	108
BssT1I	CCWWGG	1 cut(s)	108
Bst2UI	CCWGG	1 cut(s)	72
Bst4CI	ACNGT	1 cut(s)	145
BstNI	CCWGG	1 cut(s)	72
BstSCI	CCNGG	1 cut(s)	70
BstXI	CCANNNNNNTGG	1 cut(s)	136
BtsI	GCAGTG	1 cut(s)	58
BtsIMutI	CAGTG	1 cut(s)	58
CsiI	ACCWGGT	1 cut(s)	70
Csp6I	GTAC	2 cut(s)	68, 245
CviJI	RGCY	3 cut(s)	9, 46, 172
CviKI_1	RGCY	3 cut(s)	9, 46, 172
CviQI	GTAC	2 cut(s)	68, 245
DraI	TTTAAA	1 cut(s)	216
Eco130I	CCWWGG	1 cut(s)	108
EcoRII	CCWGG	1 cut(s)	70
EcoT14I	CCWWGG	1 cut(s)	108
ErhI	CCWWGG	1 cut(s)	108
FaiI	YATR	7 cut(s)	58, 121, 153, 155, 157, 162, 285
GsaI	CCCAGC	1 cut(s)	240
HapII	CCGG	1 cut(s)	179
HindIII	AAGCTT	1 cut(s)	44
HinfI	GANTC	1 cut(s)	231
HpaII	CCGG	1 cut(s)	179
Hpy188I	TCNGA	1 cut(s)	185
Hpy188III	TCNNGA	1 cut(s)	191
HpyCH4III	ACNGT	1 cut(s)	145
HpyCH4IV	ACGT	1 cut(s)	197
HpyCH4V	TGCA	2 cut(s)	56, 271
HpySE526I	ACGT	1 cut(s)	197
KpnI	GGTACC	1 cut(s)	248
LmnI	GCTCC	1 cut(s)	169
LpnPI	CCDG	6 cut(s)	57, 84, 192, 250, 264, 275
LweI	GCATC	1 cut(s)	280
MabI	ACCWGGT	1 cut(s)	70
MaeII	ACGT	1 cut(s)	197
MaeIII	GTNAC	3 cut(s)	19, 198, 279
MboII	GAAGA	1 cut(s)	26
MluCI	AATT	1 cut(s)	259
MlyI	GAGTC	1 cut(s)	225
MmeI	TCCRAC	1 cut(s)	55
MnlI	CCTC	2 cut(s)	160, 221
MseI	TTAA	1 cut(s)	215
MspI	CCGG	1 cut(s)	179
MspR9I	CCNGG	1 cut(s)	72
MvaI	CCWGG	1 cut(s)	72
NlaIV	GGNNCC	1 cut(s)	246
NmuCI	GTSAC	2 cut(s)	19, 279
PleI	GAGTC	1 cut(s)	225
PpsI	GAGTC	1 cut(s)	225
Psp1406I	AACGTT	1 cut(s)	197
Psp6I	CCWGG	1 cut(s)	70
PspFI	CCCAGC	1 cut(s)	236
PspGI	CCWGG	1 cut(s)	70
PspN4I	GGNNCC	1 cut(s)	246
RsaI	GTAC	2 cut(s)	69, 246
RsaNI	GTAC	2 cut(s)	68, 245
SaqAI	TTAA	1 cut(s)	215
SchI	GAGTC	1 cut(s)	225
ScrFI	CCNGG	1 cut(s)	72
SetI	ASST	7 cut(s)	48, 73, 98, 174, 200, 246, 253
SexAI	ACCWGGT	1 cut(s)	70
SfaNI	GCATC	1 cut(s)	280
Sse9I	AATT	1 cut(s)	259
StyD4I	CCNGG	1 cut(s)	70
StyI	CCWWGG	1 cut(s)	108
TaaI	ACNGT	1 cut(s)	145
TaiI	ACGT	1 cut(s)	200
TaqI	TCGA	1 cut(s)	207
TasI	AATT	1 cut(s)	259
Tru1I	TTAA	1 cut(s)	215
Tru9I	TTAA	1 cut(s)	215
TscAI	CASTG	1 cut(s)	58
TseFI	GTSAC	2 cut(s)	19, 279
Tsp45I	GTSAC	2 cut(s)	19, 279
TspGWI	ACGGA	1 cut(s)	179
TspRI	CASTG	1 cut(s)	58
XcmI	CCANNNNNNNNNTGG	1 cut(s)	44

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.