Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008496.1

Orthogroup ID

OG0003003

Physical Location & Seq

Genomic Coordinates Forward (+)

9980 .. 13101

Gene Structure 3122 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008496.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1296 bp

atggaagaaaccatcaacgtactgcgtcccaagcgcaaacattcactaaacactgaagcagaacaacctgagcctcacaaaaggaggcgcagaactgtggagtccgcaaccgaaccgttaacccgacaacccgacccgtcatcttcaaataggttccaactcttgtcttgtccatctcccaagaaagaaacacagagctctcgggaatgggtctgcaactcttccacttcttctgcctatggagagaagtttgtggttgtttcttataacattctgggtgttgaaaatgcatccaatcactcagatatgtataataatgtgccacccagatatatgaagtggaagcgtcgcaggaggcttatacgaaaggaggtcaatagttacaatgctagcattgtatgttttcaggaggtcgatcgtttcgatgatttaggtcataagttccggaaagatgggttcgaaggtgtgtacaaggcacgcactggtgaagtaagtgatggatgtgctatattttggaaacaggacatgtttagccttttgcatcaagaaagtatagagttccaaagttttggccttcgtcataatgttgctcaattttgtgttttaaagttgcaagatcaattagagtcagatgtacctcctgatacatcaatgaggccatgtacccgaagtagaagcttagtgattgggaatatacatgtcctattcaaccctagccgtggagatatcaagctagggcaggttcgactgtttcttgaaaaagcttacaagctgtcactagagtggggatctatccctgttataattgctggggatctaaatagcactccacagagtcctatttaccagtttctagcttcatctcagttagacatccaacgacatgaccgcagacgtgtctcaggacagattgaatttgaatcgcagtacagaaccttcacgtataacaggtttggaaagccattcttttatagatggagtgcggaagaagtaaggcttgcaacgggctgtgaagaagtcactcatctccaacaccatctaaagcttggcagtgcatatcttggagtacctggtagtcgcagaacaagagataggtgtggagaacccttggcaacatcataccactccaagtttttgggaactgttgattatatatggcatacggaggagcttgttccggtcagagttcttgaaacgttacccatcgacactttaaaaggaatgggaggactccccagcaaggtaccacctgtcgccaattcttttgtgcatcatcagtcacatagactggagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

431

Amino Acids

49.63

Weight (kDa)

9.21

Isoelectric Point (pI)

65.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003003)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73875 AT1G73875 AT1G73875
fragaria_vesca	FvH4_5g12230 FvH4_5g12230 FvH4_5g12230 FvH4_5g12230 FvH4_5g12230 FvH4_5g12230 FvH4_5g12230 FvH4_5g12230
malus_domestica	MD06G1215600.v1.1
prunus_persica	Prupe.5G220800_v2.0.a1 Prupe.5G220800_v2.0.a1 Prupe.5G220800_v2.0.a1 Prupe.5G220800_v2.0.a1 Prupe.5G220800_v2.0.a1 Prupe.5G220800_v2.0.a1 Prupe.5G220800_v2.0.a1 Prupe.5G220800_v2.0.a1 Prupe.5G220800_v2.0.a1 Prupe.5G220800_v2.0.a1 Prupe.5G220800_v2.0.a1 Prupe.5G220800_v2.0.a1
pyrus_communis	pycom06g19230
rosa_chinensis	RchiOBHm_Chr7g0185351
rosa_laevigata	RLG00000004920
rosa_multiflora	Rmu_co8209176.1_g000001 Rmu_sc0001761.1_g000015 Rmu_sc0008496.1_g000004 Rmu_sc0038524.1_g000001
rosa_roxburghii	Rroxscaffold_3G00269030
rosa_rugosa	Rorug06G0468200
rosa_samantha	Rh7AG074500 Rh7BG072700 Rh7CG073700 Rh7DG073300
rosa_wichuraiana	Rw7G006090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	267, 803
Acc36I	ACCTGC	1 cut(s)	730
Acc65I	GGTACC	1 cut(s)	1243
AccB1I	GGYRCC	1 cut(s)	1243
AccIII	TCCGGA	1 cut(s)	444
AciI	CCGC	3 cut(s)	105, 889, 983
AclI	AACGTT	1 cut(s)	1196
AclWI	GGATC	2 cut(s)	796, 822
AcsI	RAATTY	1 cut(s)	914
AcuI	CTGAAG	1 cut(s)	75
AfaI	GTAC	7 cut(s)	21, 470, 636, 664, 929, 1068, 1245
AfiI	CCNNNNNNNGG	2 cut(s)	719, 1240
AflIII	ACRYGT	3 cut(s)	525, 697, 895
AgsI	TTSAA	7 cut(s)	147, 284, 709, 758, 914, 920, 1193
AjiI	CACGTC	1 cut(s)	896
AjnI	CCWGG	1 cut(s)	1069
AleI	CACNNNNGTG	1 cut(s)	781
AluBI	AGCT	8 cut(s)	198, 678, 733, 764, 772, 857, 1045, 1171
AluI	AGCT	8 cut(s)	198, 678, 733, 764, 772, 857, 1045, 1171
Alw21I	GWGCWC	1 cut(s)	200
Alw26I	GTCTC	1 cut(s)	904
AlwI	GGATC	2 cut(s)	796, 822
Ama87I	CYCGRG	1 cut(s)	201
Aor13HI	TCCGGA	1 cut(s)	444
AoxI	GGCC	2 cut(s)	571, 656
ApoI	RAATTY	1 cut(s)	914
Asp718I	GGTACC	1 cut(s)	1243
AspLEI	GCGC	2 cut(s)	36, 90
AsuHPI	GGTGA	1 cut(s)	497
AsuII	TTCGAA	1 cut(s)	459
AsuNHI	GCTAGC	1 cut(s)	389
AvaI	CYCGRG	1 cut(s)	201
BanI	GGYRCC	1 cut(s)	1243
BanII	GRGCYC	1 cut(s)	200
BarI	GAAGNNNNNNTAC	2 cut(s)	920, 952
Bbv12I	GWGCWC	1 cut(s)	200
BccI	CCATC	7 cut(s)	20, 181, 446, 491, 969, 1044, 1211
BceAI	ACGGC	1 cut(s)	702
BciT130I	CCWGG	1 cut(s)	1071
BcoDI	GTCTC	1 cut(s)	904
BfaI	CTAG	5 cut(s)	390, 714, 734, 779, 854
BfuAI	ACCTGC	1 cut(s)	730
Bme1390I	CCNGG	1 cut(s)	1071
BmeT110I	CYCGRG	1 cut(s)	201
BmgBI	CACGTC	1 cut(s)	896
BmiI	GGNNCC	2 cut(s)	155, 1245
BmrFI	CCNGG	1 cut(s)	1071
BmsI	GCATC	3 cut(s)	299, 550, 1279
BmtI	GCTAGC	1 cut(s)	393
Bpu10I	CCTNAGC	1 cut(s)	69
Bpu14I	TTCGAA	1 cut(s)	459
BsaAI	YACGTR	1 cut(s)	942
BsaJI	CCNNGG	2 cut(s)	718, 1107
BsaWI	WCCGGW	2 cut(s)	444, 1177
Bsc4I	CCNNNNNNNGG	2 cut(s)	719, 1240
Bse1I	ACTGG	3 cut(s)	487, 847, 1293
BseAI	TCCGGA	1 cut(s)	444
BseBI	CCWGG	1 cut(s)	1071
BseDI	CCNNGG	2 cut(s)	718, 1107
BseGI	GGATG	3 cut(s)	290, 506, 873
BseLI	CCNNNNNNNGG	2 cut(s)	719, 1240
BseMII	CTCAG	4 cut(s)	60, 315, 878, 915
BseNI	ACTGG	3 cut(s)	487, 847, 1293
BseRI	GAGGAG	1 cut(s)	1181
BseYI	CCCAGC	2 cut(s)	809, 1235
Bsh1285I	CGRYCG	1 cut(s)	418
BshFI	GGCC	2 cut(s)	573, 658
BshNI	GGYRCC	1 cut(s)	1243
BsiEI	CGRYCG	1 cut(s)	418
BsiHKAI	GWGCWC	1 cut(s)	200
BsiHKCI	CYCGRG	1 cut(s)	201
BsiSI	CCGG	2 cut(s)	445, 1178
BslFI	GGGAC	1 cut(s)	12
BslI	CCNNNNNNNGG	2 cut(s)	719, 1240
BsmAI	GTCTC	1 cut(s)	904
BsmFI	GGGAC	1 cut(s)	12
BsnI	GGCC	2 cut(s)	573, 658
BsoBI	CYCGRG	1 cut(s)	201
Bsp119I	TTCGAA	1 cut(s)	459
Bsp1286I	GDGCHC	1 cut(s)	200
Bsp13I	TCCGGA	1 cut(s)	444
Bsp1407I	TGTACA	1 cut(s)	468
Bsp143I	GATC	4 cut(s)	415, 616, 788, 814
BspACI	CCGC	3 cut(s)	105, 889, 983
BspANI	GGCC	2 cut(s)	573, 658
BspCNI	CTCAG	4 cut(s)	61, 314, 877, 914
BspEI	TCCGGA	1 cut(s)	444
BspLI	GGNNCC	2 cut(s)	155, 1245
BspMI	ACCTGC	1 cut(s)	730
BspOI	GCTAGC	1 cut(s)	393
BspPI	GGATC	2 cut(s)	796, 822
BspT104I	TTCGAA	1 cut(s)	459
BspT107I	GGYRCC	1 cut(s)	1243
BsrGI	TGTACA	1 cut(s)	468
BsrI	ACTGG	3 cut(s)	487, 847, 1293
BssECI	CCNNGG	2 cut(s)	718, 1107
BssMI	GATC	4 cut(s)	415, 616, 788, 814
BssT1I	CCWWGG	1 cut(s)	1107
Bst2UI	CCWGG	1 cut(s)	1071
Bst4CI	ACNGT	4 cut(s)	97, 117, 750, 1144
Bst6I	CTCTTC	1 cut(s)	226
BstAUI	TGTACA	1 cut(s)	468
BstBAI	YACGTR	1 cut(s)	942
BstBI	TTCGAA	1 cut(s)	459
BstC8I	GCNNGC	3 cut(s)	391, 478, 999
BstDEI	CTNAG	5 cut(s)	69, 301, 679, 864, 901
BstDSI	CCRYGG	1 cut(s)	718
BstF5I	GGATG	3 cut(s)	290, 506, 873
BstHHI	GCGC	2 cut(s)	36, 90
BstKTI	GATC	4 cut(s)	418, 619, 791, 817
BstMAI	GTCTC	1 cut(s)	904
BstMBI	GATC	4 cut(s)	415, 616, 788, 814
BstMCI	CGRYCG	1 cut(s)	418
BstMWI	GCNNNNNNNGC	1 cut(s)	31
BstNI	CCWGG	1 cut(s)	1071
BstNSI	RCATGY	2 cut(s)	529, 701
BstSCI	CCNGG	1 cut(s)	1069
BstX2I	RGATCY	2 cut(s)	788, 814
BstXI	CCANNNNNNTGG	2 cut(s)	569, 1135
BstYI	RGATCY	2 cut(s)	788, 814
BsuRI	GGCC	2 cut(s)	573, 658
BtgI	CCRYGG	1 cut(s)	718
BtrI	CACGTC	1 cut(s)	896
BtsCI	GGATG	3 cut(s)	290, 506, 873
BtsI	GCAGTG	1 cut(s)	1057
BtsIMutI	CAGTG	3 cut(s)	51, 480, 1057
BveI	ACCTGC	1 cut(s)	730
Cac8I	GCNNGC	3 cut(s)	391, 478, 999
CfoI	GCGC	2 cut(s)	36, 90
CseI	GACGC	2 cut(s)	14, 335
CsiI	ACCWGGT	1 cut(s)	1069
Csp6I	GTAC	7 cut(s)	20, 469, 635, 663, 928, 1067, 1244
CviAII	CATG	4 cut(s)	526, 660, 698, 884
CviQI	GTAC	7 cut(s)	20, 469, 635, 663, 928, 1067, 1244
DdeI	CTNAG	5 cut(s)	69, 301, 679, 864, 901
DpnI	GATC	4 cut(s)	417, 618, 790, 816
DpnII	GATC	4 cut(s)	415, 616, 788, 814
DraI	TTTAAA	2 cut(s)	606, 1215
Eam1104I	CTCTTC	1 cut(s)	226
EarI	CTCTTC	1 cut(s)	226
Ecl136II	GAGCTC	1 cut(s)	198
Eco130I	CCWWGG	1 cut(s)	1107
Eco24I	GRGCYC	1 cut(s)	200
Eco32I	GATATC	1 cut(s)	727
Eco53kI	GAGCTC	1 cut(s)	198
Eco57I	CTGAAG	1 cut(s)	75
Eco88I	CYCGRG	1 cut(s)	201
EcoICRI	GAGCTC	1 cut(s)	198
EcoRII	CCWGG	1 cut(s)	1069
EcoRV	GATATC	1 cut(s)	727
EcoT14I	CCWWGG	1 cut(s)	1107
EcoT22I	ATGCAT	1 cut(s)	292
EcoT38I	GRGCYC	1 cut(s)	200
ErhI	CCWWGG	1 cut(s)	1107
FaeI	CATG	4 cut(s)	529, 663, 701, 887
FalI	AAGNNNNNCTT	4 cut(s)	950, 982, 981, 1013
FaqI	GGGAC	1 cut(s)	12
FatI	CATG	4 cut(s)	525, 659, 697, 883
FokI	GGATG	3 cut(s)	277, 513, 860
FriOI	GRGCYC	1 cut(s)	200
FspBI	CTAG	5 cut(s)	390, 714, 734, 779, 854
GlaI	GCGC	2 cut(s)	35, 89
GsaI	CCCAGC	2 cut(s)	813, 1239
HaeIII	GGCC	2 cut(s)	573, 658
HapII	CCGG	2 cut(s)	445, 1178
HgaI	GACGC	2 cut(s)	14, 335
HhaI	GCGC	2 cut(s)	36, 90
Hin1II	CATG	4 cut(s)	529, 663, 701, 887
Hin6I	GCGC	2 cut(s)	34, 88
HinP1I	GCGC	2 cut(s)	34, 88
HincII	GTYRAC	1 cut(s)	120
HindII	GTYRAC	1 cut(s)	120
HindIII	AAGCTT	3 cut(s)	676, 762, 1043
HinfI	GANTC	5 cut(s)	101, 626, 835, 920, 1230
HpaI	GTTAAC	1 cut(s)	120
HpaII	CCGG	2 cut(s)	445, 1178
HphI	GGTGA	1 cut(s)	497
Hpy166II	GTNNAC	2 cut(s)	120, 469
Hpy188I	TCNGA	3 cut(s)	304, 631, 1184
Hpy188III	TCNNGA	8 cut(s)	203, 407, 445, 545, 641, 755, 903, 1190
Hpy8I	GTNNAC	2 cut(s)	120, 469
Hpy99I	CGWCG	1 cut(s)	351
HpyAV	CCTTC	3 cut(s)	455, 584, 946
HpyCH4III	ACNGT	4 cut(s)	97, 117, 750, 1144
HpyCH4IV	ACGT	4 cut(s)	18, 895, 941, 1196
HpyCH4V	TGCA	7 cut(s)	216, 290, 541, 613, 1001, 1055, 1270
HpyF10VI	GCNNNNNNNGC	1 cut(s)	31
HpyF3I	CTNAG	5 cut(s)	69, 301, 679, 864, 901
HpySE526I	ACGT	4 cut(s)	18, 895, 941, 1196
Hsp92II	CATG	4 cut(s)	529, 663, 701, 887
HspAI	GCGC	2 cut(s)	34, 88
Kpn2I	TCCGGA	1 cut(s)	444
KpnI	GGTACC	1 cut(s)	1247
KspAI	GTTAAC	1 cut(s)	120
Kzo9I	GATC	4 cut(s)	415, 616, 788, 814
LmnI	GCTCC	1 cut(s)	1168
LweI	GCATC	3 cut(s)	299, 550, 1279
MabI	ACCWGGT	1 cut(s)	1069
MaeI	CTAG	5 cut(s)	390, 714, 734, 779, 854
MaeII	ACGT	4 cut(s)	18, 895, 941, 1196
MaeIII	GTNAC	5 cut(s)	380, 774, 1018, 1197, 1278
MalI	GATC	4 cut(s)	417, 618, 790, 816
MboI	GATC	4 cut(s)	415, 616, 788, 814
MboII	GAAGA	6 cut(s)	17, 135, 213, 222, 998, 1025
MflI	RGATCY	2 cut(s)	788, 814
MhlI	GDGCHC	1 cut(s)	200
MluCI	AATT	5 cut(s)	593, 620, 804, 914, 1258
MlyI	GAGTC	4 cut(s)	110, 635, 844, 1224
MmeI	TCCRAC	3 cut(s)	181, 901, 1054
MnlI	CCTC	9 cut(s)	78, 84, 348, 364, 403, 648, 648, 1159, 1220
Mph1103I	ATGCAT	1 cut(s)	292
MroI	TCCGGA	1 cut(s)	444
MseI	TTAA	3 cut(s)	119, 605, 1214
MslI	CAYNNNNRTG	1 cut(s)	781
MspI	CCGG	2 cut(s)	445, 1178
MspR9I	CCNGG	1 cut(s)	1071
MvaI	CCWGG	1 cut(s)	1071
MwoI	GCNNNNNNNGC	1 cut(s)	31
NdeII	GATC	4 cut(s)	415, 616, 788, 814
NheI	GCTAGC	1 cut(s)	389
NlaIII	CATG	4 cut(s)	529, 663, 701, 887
NlaIV	GGNNCC	2 cut(s)	155, 1245
NmuCI	GTSAC	3 cut(s)	774, 1018, 1278
NsiI	ATGCAT	1 cut(s)	292
NspI	RCATGY	2 cut(s)	529, 701
NspV	TTCGAA	1 cut(s)	459
OliI	CACNNNNGTG	1 cut(s)	781
PciI	ACATGT	2 cut(s)	525, 697
PcsI	WCGNNNNNNNCGW	1 cut(s)	420
PfeI	GAWTC	1 cut(s)	920
Ple19I	CGATCG	1 cut(s)	418
PleI	GAGTC	4 cut(s)	109, 634, 843, 1224
PpsI	GAGTC	4 cut(s)	109, 634, 843, 1224
Ppu21I	YACGTR	1 cut(s)	942
PscI	ACATGT	2 cut(s)	525, 697
PsiI	TTATAA	2 cut(s)	267, 803
Psp124BI	GAGCTC	1 cut(s)	200
Psp1406I	AACGTT	1 cut(s)	1196
Psp6I	CCWGG	1 cut(s)	1069
PspFI	CCCAGC	2 cut(s)	809, 1235
PspGI	CCWGG	1 cut(s)	1069
PspN4I	GGNNCC	2 cut(s)	155, 1245
PsuI	RGATCY	2 cut(s)	788, 814
PvuI	CGATCG	1 cut(s)	418
RsaI	GTAC	7 cut(s)	21, 470, 636, 664, 929, 1068, 1245
RsaNI	GTAC	7 cut(s)	20, 469, 635, 663, 928, 1067, 1244
RseI	CAYNNNNRTG	1 cut(s)	781
SacI	GAGCTC	1 cut(s)	200
SaqAI	TTAA	3 cut(s)	119, 605, 1214
Sau3AI	GATC	4 cut(s)	415, 616, 788, 814
SchI	GAGTC	4 cut(s)	110, 635, 844, 1224
ScrFI	CCNGG	1 cut(s)	1071
SduI	GDGCHC	1 cut(s)	200
SexAI	ACCWGGT	1 cut(s)	1069
SfaNI	GCATC	3 cut(s)	299, 550, 1279
SfuI	TTCGAA	1 cut(s)	459
SmiMI	CAYNNNNRTG	1 cut(s)	781
Sse9I	AATT	5 cut(s)	593, 620, 804, 914, 1258
SsiI	CCGC	3 cut(s)	105, 889, 983
SspMI	CTAG	5 cut(s)	390, 714, 734, 779, 854
SstI	GAGCTC	1 cut(s)	200
StyD4I	CCNGG	1 cut(s)	1069
StyI	CCWWGG	1 cut(s)	1107
TaaI	ACNGT	4 cut(s)	97, 117, 750, 1144
TaiI	ACGT	4 cut(s)	21, 898, 944, 1199
TaqI	TCGA	5 cut(s)	414, 423, 459, 745, 1206
TasI	AATT	5 cut(s)	593, 620, 804, 914, 1258
TatI	WGTACW	2 cut(s)	468, 927
TfiI	GAWTC	1 cut(s)	920
Tru1I	TTAA	3 cut(s)	119, 605, 1214
Tru9I	TTAA	3 cut(s)	119, 605, 1214
TscAI	CASTG	3 cut(s)	58, 487, 1057
TseFI	GTSAC	3 cut(s)	774, 1018, 1278
Tsp45I	GTSAC	3 cut(s)	774, 1018, 1278
TspDTI	ATGAA	2 cut(s)	350, 849
TspGWI	ACGGA	1 cut(s)	1178
TspRI	CASTG	3 cut(s)	58, 487, 1057
XapI	RAATTY	1 cut(s)	914
XceI	RCATGY	2 cut(s)	529, 701
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1043
XspI	CTAG	5 cut(s)	390, 714, 734, 779, 854
Zsp2I	ATGCAT	1 cut(s)	292

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.