Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001761.1

Orthogroup ID

OG0003003

Physical Location & Seq

Genomic Coordinates Forward (+)

68991 .. 70340

Gene Structure 1350 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001761.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

atgactgatattcatacatataggaggccatgtacccgaagtagaagcttggtgattgggaatatacatgtcctattcaaccctagccgtggagatatcaagctagggcaggttcgactgtttcttgaaaaagcttacaagctgtcattagagtggggatctatccctgttataattgctggggatctaaatagcactccacagagtcctatttaccagtttctagcttcatctcagttagacatccaacgacatgaccgcagacgtgtctcaggacagattgaatttgaatcgcagtacagaaccttcacgtataacaggtttggaaagccattcttttatagatggagtgcggaagaagtaaggcttgcaacgggctgtgaagaagtcactcatctccaacaccatctaaagcttggcagtgcatatcttggagtacctggtagtcgcagaacaagagataggtgtggagaacccttggcaacatcataccactccaagtttttgggaactgttgattatatatggcatacggaggagcttgttccggtcagagttcttgaaacgttacccatcgacactttaaaaggaatgggaggactccccagcaaggtaccacctgtcgccaattcttttgtgcatcatcagtcacatagactggagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

221

Amino Acids

25.33

Weight (kDa)

9.45

Isoelectric Point (pI)

56.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003003)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73875 AT1G73875 AT1G73875
fragaria_vesca	FvH4_5g12230 FvH4_5g12230 FvH4_5g12230 FvH4_5g12230 FvH4_5g12230 FvH4_5g12230 FvH4_5g12230 FvH4_5g12230
malus_domestica	MD06G1215600.v1.1
prunus_persica	Prupe.5G220800_v2.0.a1 Prupe.5G220800_v2.0.a1 Prupe.5G220800_v2.0.a1 Prupe.5G220800_v2.0.a1 Prupe.5G220800_v2.0.a1 Prupe.5G220800_v2.0.a1 Prupe.5G220800_v2.0.a1 Prupe.5G220800_v2.0.a1 Prupe.5G220800_v2.0.a1 Prupe.5G220800_v2.0.a1 Prupe.5G220800_v2.0.a1 Prupe.5G220800_v2.0.a1
pyrus_communis	pycom06g19230
rosa_chinensis	RchiOBHm_Chr7g0185351
rosa_laevigata	RLG00000004920
rosa_multiflora	Rmu_co8209176.1_g000001 Rmu_sc0001761.1_g000015 Rmu_sc0008496.1_g000004 Rmu_sc0038524.1_g000001
rosa_roxburghii	Rroxscaffold_3G00269030
rosa_rugosa	Rorug06G0468200
rosa_samantha	Rh7AG074500 Rh7BG072700 Rh7CG073700 Rh7DG073300
rosa_wichuraiana	Rw7G006090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	173
Acc36I	ACCTGC	1 cut(s)	100
Acc65I	GGTACC	1 cut(s)	613
AccB1I	GGYRCC	1 cut(s)	613
AciI	CCGC	2 cut(s)	259, 353
AclI	AACGTT	1 cut(s)	566
AclWI	GGATC	2 cut(s)	166, 192
AcsI	RAATTY	1 cut(s)	284
AfaI	GTAC	4 cut(s)	34, 299, 438, 615
AfiI	CCNNNNNNNGG	2 cut(s)	89, 610
AflIII	ACRYGT	2 cut(s)	67, 265
AgsI	TTSAA	5 cut(s)	79, 128, 284, 290, 563
AjiI	CACGTC	1 cut(s)	266
AjnI	CCWGG	1 cut(s)	439
AluBI	AGCT	7 cut(s)	48, 103, 134, 142, 227, 415, 541
AluI	AGCT	7 cut(s)	48, 103, 134, 142, 227, 415, 541
Alw26I	GTCTC	1 cut(s)	274
AlwI	GGATC	2 cut(s)	166, 192
AoxI	GGCC	1 cut(s)	26
ApoI	RAATTY	1 cut(s)	284
Asp718I	GGTACC	1 cut(s)	613
AsuHPI	GGTGA	1 cut(s)	64
BanI	GGYRCC	1 cut(s)	613
BarI	GAAGNNNNNNTAC	2 cut(s)	290, 322
BccI	CCATC	3 cut(s)	339, 414, 581
BceAI	ACGGC	1 cut(s)	72
BciT130I	CCWGG	1 cut(s)	441
BcoDI	GTCTC	1 cut(s)	274
BfaI	CTAG	3 cut(s)	84, 104, 224
BfuAI	ACCTGC	1 cut(s)	100
Bme1390I	CCNGG	1 cut(s)	441
BmgBI	CACGTC	1 cut(s)	266
BmiI	GGNNCC	1 cut(s)	615
BmrFI	CCNGG	1 cut(s)	441
BmsI	GCATC	1 cut(s)	649
BsaAI	YACGTR	1 cut(s)	312
BsaJI	CCNNGG	2 cut(s)	88, 477
BsaWI	WCCGGW	1 cut(s)	547
BsaXI	ACNNNNNCTCC	2 cut(s)	16, 46
Bsc4I	CCNNNNNNNGG	2 cut(s)	89, 610
Bse1I	ACTGG	2 cut(s)	217, 663
BseBI	CCWGG	1 cut(s)	441
BseDI	CCNNGG	2 cut(s)	88, 477
BseGI	GGATG	1 cut(s)	243
BseLI	CCNNNNNNNGG	2 cut(s)	89, 610
BseMII	CTCAG	2 cut(s)	248, 285
BseNI	ACTGG	2 cut(s)	217, 663
BseRI	GAGGAG	1 cut(s)	551
BseYI	CCCAGC	2 cut(s)	179, 605
BshFI	GGCC	1 cut(s)	28
BshNI	GGYRCC	1 cut(s)	613
BsiSI	CCGG	1 cut(s)	548
BslI	CCNNNNNNNGG	2 cut(s)	89, 610
BsmAI	GTCTC	1 cut(s)	274
BsnI	GGCC	1 cut(s)	28
Bsp143I	GATC	2 cut(s)	158, 184
BspACI	CCGC	2 cut(s)	259, 353
BspANI	GGCC	1 cut(s)	28
BspCNI	CTCAG	2 cut(s)	247, 284
BspLI	GGNNCC	1 cut(s)	615
BspMI	ACCTGC	1 cut(s)	100
BspPI	GGATC	2 cut(s)	166, 192
BspT107I	GGYRCC	1 cut(s)	613
BsrI	ACTGG	2 cut(s)	217, 663
BssECI	CCNNGG	2 cut(s)	88, 477
BssMI	GATC	2 cut(s)	158, 184
BssT1I	CCWWGG	1 cut(s)	477
Bst2UI	CCWGG	1 cut(s)	441
Bst4CI	ACNGT	2 cut(s)	120, 514
BstBAI	YACGTR	1 cut(s)	312
BstC8I	GCNNGC	1 cut(s)	369
BstDEI	CTNAG	2 cut(s)	234, 271
BstDSI	CCRYGG	1 cut(s)	88
BstF5I	GGATG	1 cut(s)	243
BstKTI	GATC	2 cut(s)	161, 187
BstMAI	GTCTC	1 cut(s)	274
BstMBI	GATC	2 cut(s)	158, 184
BstNI	CCWGG	1 cut(s)	441
BstNSI	RCATGY	1 cut(s)	71
BstSCI	CCNGG	1 cut(s)	439
BstX2I	RGATCY	2 cut(s)	158, 184
BstXI	CCANNNNNNTGG	1 cut(s)	505
BstYI	RGATCY	2 cut(s)	158, 184
BsuRI	GGCC	1 cut(s)	28
BtgI	CCRYGG	1 cut(s)	88
BtrI	CACGTC	1 cut(s)	266
BtsCI	GGATG	1 cut(s)	243
BtsI	GCAGTG	1 cut(s)	427
BtsIMutI	CAGTG	1 cut(s)	427
BveI	ACCTGC	1 cut(s)	100
Cac8I	GCNNGC	1 cut(s)	369
CsiI	ACCWGGT	1 cut(s)	439
Csp6I	GTAC	4 cut(s)	33, 298, 437, 614
CviAII	CATG	3 cut(s)	30, 68, 254
CviQI	GTAC	4 cut(s)	33, 298, 437, 614
DdeI	CTNAG	2 cut(s)	234, 271
DpnI	GATC	2 cut(s)	160, 186
DpnII	GATC	2 cut(s)	158, 184
DraI	TTTAAA	1 cut(s)	585
Eco130I	CCWWGG	1 cut(s)	477
Eco32I	GATATC	1 cut(s)	97
EcoRII	CCWGG	1 cut(s)	439
EcoRV	GATATC	1 cut(s)	97
EcoT14I	CCWWGG	1 cut(s)	477
ErhI	CCWWGG	1 cut(s)	477
FaeI	CATG	3 cut(s)	33, 71, 257
FalI	AAGNNNNNCTT	4 cut(s)	320, 352, 351, 383
FatI	CATG	3 cut(s)	29, 67, 253
FokI	GGATG	1 cut(s)	230
FspBI	CTAG	3 cut(s)	84, 104, 224
GsaI	CCCAGC	2 cut(s)	183, 609
HaeIII	GGCC	1 cut(s)	28
HapII	CCGG	1 cut(s)	548
Hin1II	CATG	3 cut(s)	33, 71, 257
HindIII	AAGCTT	3 cut(s)	46, 132, 413
HinfI	GANTC	3 cut(s)	205, 290, 600
HpaII	CCGG	1 cut(s)	548
HphI	GGTGA	1 cut(s)	64
Hpy188I	TCNGA	1 cut(s)	554
Hpy188III	TCNNGA	3 cut(s)	125, 273, 560
HpyAV	CCTTC	1 cut(s)	316
HpyCH4III	ACNGT	2 cut(s)	120, 514
HpyCH4IV	ACGT	3 cut(s)	265, 311, 566
HpyCH4V	TGCA	3 cut(s)	371, 425, 640
HpyF3I	CTNAG	2 cut(s)	234, 271
HpySE526I	ACGT	3 cut(s)	265, 311, 566
Hsp92II	CATG	3 cut(s)	33, 71, 257
KpnI	GGTACC	1 cut(s)	617
Kzo9I	GATC	2 cut(s)	158, 184
LmnI	GCTCC	1 cut(s)	538
LweI	GCATC	1 cut(s)	649
MabI	ACCWGGT	1 cut(s)	439
MaeI	CTAG	3 cut(s)	84, 104, 224
MaeII	ACGT	3 cut(s)	265, 311, 566
MaeIII	GTNAC	3 cut(s)	388, 567, 648
MalI	GATC	2 cut(s)	160, 186
MboI	GATC	2 cut(s)	158, 184
MboII	GAAGA	2 cut(s)	368, 395
MflI	RGATCY	2 cut(s)	158, 184
MluCI	AATT	3 cut(s)	174, 284, 628
MlyI	GAGTC	2 cut(s)	214, 594
MmeI	TCCRAC	2 cut(s)	271, 424
MnlI	CCTC	3 cut(s)	18, 529, 590
MseI	TTAA	1 cut(s)	584
MslI	CAYNNNNRTG	1 cut(s)	151
MspI	CCGG	1 cut(s)	548
MspR9I	CCNGG	1 cut(s)	441
MvaI	CCWGG	1 cut(s)	441
NdeII	GATC	2 cut(s)	158, 184
NlaIII	CATG	3 cut(s)	33, 71, 257
NlaIV	GGNNCC	1 cut(s)	615
NmuCI	GTSAC	2 cut(s)	388, 648
NspI	RCATGY	1 cut(s)	71
PciI	ACATGT	1 cut(s)	67
PfeI	GAWTC	1 cut(s)	290
PleI	GAGTC	2 cut(s)	213, 594
PpsI	GAGTC	2 cut(s)	213, 594
Ppu21I	YACGTR	1 cut(s)	312
PscI	ACATGT	1 cut(s)	67
PsiI	TTATAA	1 cut(s)	173
Psp1406I	AACGTT	1 cut(s)	566
Psp6I	CCWGG	1 cut(s)	439
PspFI	CCCAGC	2 cut(s)	179, 605
PspGI	CCWGG	1 cut(s)	439
PspN4I	GGNNCC	1 cut(s)	615
PsuI	RGATCY	2 cut(s)	158, 184
RsaI	GTAC	4 cut(s)	34, 299, 438, 615
RsaNI	GTAC	4 cut(s)	33, 298, 437, 614
RseI	CAYNNNNRTG	1 cut(s)	151
SaqAI	TTAA	1 cut(s)	584
Sau3AI	GATC	2 cut(s)	158, 184
SchI	GAGTC	2 cut(s)	214, 594
ScrFI	CCNGG	1 cut(s)	441
SexAI	ACCWGGT	1 cut(s)	439
SfaNI	GCATC	1 cut(s)	649
SmiMI	CAYNNNNRTG	1 cut(s)	151
Sse9I	AATT	3 cut(s)	174, 284, 628
SsiI	CCGC	2 cut(s)	259, 353
SspMI	CTAG	3 cut(s)	84, 104, 224
StyD4I	CCNGG	1 cut(s)	439
StyI	CCWWGG	1 cut(s)	477
TaaI	ACNGT	2 cut(s)	120, 514
TaiI	ACGT	3 cut(s)	268, 314, 569
TaqI	TCGA	2 cut(s)	115, 576
TasI	AATT	3 cut(s)	174, 284, 628
TatI	WGTACW	1 cut(s)	297
TfiI	GAWTC	1 cut(s)	290
Tru1I	TTAA	1 cut(s)	584
Tru9I	TTAA	1 cut(s)	584
TscAI	CASTG	1 cut(s)	427
TseFI	GTSAC	2 cut(s)	388, 648
Tsp45I	GTSAC	2 cut(s)	388, 648
TspDTI	ATGAA	1 cut(s)	219
TspGWI	ACGGA	1 cut(s)	548
TspRI	CASTG	1 cut(s)	427
XapI	RAATTY	1 cut(s)	284
XceI	RCATGY	1 cut(s)	71
XcmI	CCANNNNNNNNNTGG	1 cut(s)	413
XspI	CTAG	3 cut(s)	84, 104, 224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.