Prupe.5G220800_v2.0.a1

Carbon catabolite repressor protein 4 homolog

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Reverse (-)
17199829 .. 17204533
4705 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G220800.9

Sequence Viewer

Length: 1404 bp
ATGAAACAGTTAGGCAGAATGGAGGGAAATGGCGATGTGCGGCCTCCGAAACGTAAACGATATTCAGTAAACACAGAAGTAGAACAGCAGCCTCACAAAATTAGGCGCGGAAGAGTTGAGTTCGAAACAGAAACCCTAACCCGAGAACCCGGCCCGTCGTTGTCAACTAGGTTCCAAGCCCTTTCTCCCTTATCTCGGAGGCATAGGAAGCCGCAACAGAGTCGAGATGAGAGAGAGAGCTCCCGGCAGTGGGCTTTCTCTCCCTGCAACTCTTCTACTTCTACCTATAAAGATAAATTTGTGGTTGTTTCTTATAACATTCTGGGTGTTGAAAATGCATCCAAGCACCCAGATTTGTACTATAAAGTCCCACCCAGATTCTTGGAGTGGGGCCGCCGCAAGAAGCTTATACGGAAGGAGATCAATCGTTATAATGCTAGCATCATGTGTTTACAGGAGGTTGATCGTTTTGATGATTTAGCTCATCTTTTCCAGAAAGATGGGTTCGAAGGTGTTTACAAGGCACGCACAGGTGAAGCAAGTGATGGATGCGCTATATTTTGGAAAAAAGAAATGTTTAGCCTTTTGCATCAAGAAAATATAGAGTTCCAAAGTTTTGGCCTTCGTAACAATGTTGCCCAACTTTGTGTTTTAAAGCACATTGTAGCAACTTGTGTTGAAAGTAAACAAAATCAATTAGAGTCGGAGATAACTCCCCAAACGTCGGTGAGTCCATGCACCCAAAACAGAAGCGTAGTGATTGGCAATACGCATGTACTATTCAATCCAAACCGTGGAGACATCAAGCTAGGGCAGGTCCGTCTGTTTCTTGAAAAAGCTCATGAGCTATCACAAGAATGGGGCAGTATCCCTGTTATAATTTCCGGAGATCTAAATAGTATCCCACAGAGTCCTATGTACCAGTTCCTGGCTTCATCTGAGTTGGACATCCGACTACATAACCGCAGACATATTTCCGGACAGGTTGACTCTGGATCAGAGAACATATCCTTCAGATCTCAGAATGGGAAAGCAAGCAGATGCAGTATTAGGAAATATATTTCAAGGCCATCGCAATATATATGGAATGAGGAAGAAGTAAGGCTTGCAACAGGCATTGAAGGAGCCACTCGTCTTCAGCACCATTTAAAGCTTTGCAGTGCATATCTTGGAGTACCTGGTAGTTGTAGAACCAGAGATAGGTGTGGAGAACCCTTGGCAACATCGTACCACTCCAAGTTCATGGGAACTGTTGATTATATTTGGCATACAGAGGAACTTGTTCCTGTCAGAGTCCTTGAAACCTTACCAGTAAACATTTTAAGAAGAAATGGAGGACTCCCTAGCAAAAAATGGGGTAGCGATCATCTTGCTCTTGTATGTGAACTGGCTTTTCGTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

468

Amino Acids

53.55

Weight (kDa)

9.45

Isoelectric Point (pI)

55.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 315, 432, 878
Acc36I ACCTGC 1 cut(s) 805
AccB7I CCANNNNNTGG 2 cut(s) 794, 928
AccII CGCG 1 cut(s) 108
AccIII TCCGGA 2 cut(s) 884, 977
AciI CCGC 6 cut(s) 40, 108, 212, 394, 397, 964
AclWI GGATC 1 cut(s) 1003
AcsI RAATTY 1 cut(s) 296
AcuI CTGAAG 2 cut(s) 997, 1121
AfaI GTAC 5 cut(s) 359, 777, 920, 1176, 1229
AfiI CCNNNNNNNGG 7 cut(s) 195, 249, 250, 724, 794, 928, 1200
AgsI TTSAA 7 cut(s) 332, 680, 784, 833, 1065, 1121, 1301
AjnI CCWGG 2 cut(s) 927, 1177
AluBI AGCT 7 cut(s) 240, 406, 482, 808, 839, 847, 1153
AluI AGCT 7 cut(s) 240, 406, 482, 808, 839, 847, 1153
Alw21I GWGCWC 1 cut(s) 242
Alw26I GTCTC 1 cut(s) 792
AlwI GGATC 1 cut(s) 1003
AlwNI CAGNNNCTG 1 cut(s) 928
Ama87I CYCGRG 1 cut(s) 141
Aor13HI TCCGGA 2 cut(s) 884, 977
AoxI GGCC 5 cut(s) 41, 151, 391, 619, 1067
ApeKI GCWGC 1 cut(s) 88
ApoI RAATTY 1 cut(s) 296
Asp700I GAANNNNTTC 1 cut(s) 1281
AspLEI GCGC 2 cut(s) 108, 554
AspS9I GGNCC 3 cut(s) 152, 391, 817
AsuC2I CCSGG 2 cut(s) 150, 244
AsuHPI GGTGA 2 cut(s) 545, 739
AsuII TTCGAA 2 cut(s) 123, 507
AsuNHI GCTAGC 1 cut(s) 437
AvaI CYCGRG 1 cut(s) 141
AvaII GGWCC 1 cut(s) 817
BanII GRGCYC 1 cut(s) 242
BbsI GAAGAC 1 cut(s) 1127
Bbv12I GWGCWC 1 cut(s) 242
BbvI GCAGC 1 cut(s) 100
BccI CCATC 3 cut(s) 494, 539, 1078
BcgI CGANNNNNNTGC 4 cut(s) 203, 237, 1352, 1386
BciT130I CCWGG 2 cut(s) 929, 1179
BciVI GTATCC 2 cut(s) 878, 911
BcnI CCSGG 2 cut(s) 150, 244
BcoDI GTCTC 1 cut(s) 792
BfaI CTAG 4 cut(s) 168, 438, 809, 1344
BfuAI ACCTGC 1 cut(s) 805
BfuI GTATCC 2 cut(s) 878, 911
BglII AGATCT 2 cut(s) 889, 1016
BisI GCNGC 5 cut(s) 41, 89, 212, 394, 397
BlsI GCNGC 5 cut(s) 42, 90, 213, 395, 398
Bme1390I CCNGG 4 cut(s) 150, 244, 929, 1179
Bme18I GGWCC 1 cut(s) 817
BmeT110I CYCGRG 1 cut(s) 141
BmgT120I GGNCC 3 cut(s) 152, 391, 817
BmiI GGNNCC 3 cut(s) 173, 392, 1126
BmrFI CCNGG 4 cut(s) 150, 244, 929, 1179
BmsI GCATC 5 cut(s) 347, 450, 539, 598, 1031
BmtI GCTAGC 1 cut(s) 441
BpiI GAAGAC 1 cut(s) 1127
Bpu14I TTCGAA 2 cut(s) 123, 507
BpuMI CCSGG 2 cut(s) 150, 244
BsaJI CCNNGG 2 cut(s) 793, 1215
BsaWI WCCGGW 2 cut(s) 884, 977
Bsc4I CCNNNNNNNGG 7 cut(s) 195, 249, 250, 724, 794, 928, 1200
Bse1I ACTGG 3 cut(s) 922, 1310, 1392
BseAI TCCGGA 2 cut(s) 884, 977
BseBI CCWGG 2 cut(s) 929, 1179
BseDI CCNNGG 2 cut(s) 793, 1215
BseGI GGATG 3 cut(s) 338, 554, 948
BseLI CCNNNNNNNGG 7 cut(s) 195, 249, 250, 724, 794, 928, 1200
BseMII CTCAG 2 cut(s) 930, 1034
BseNI ACTGG 3 cut(s) 922, 1310, 1392
BseXI GCAGC 1 cut(s) 100
Bsh1236I CGCG 1 cut(s) 108
BshFI GGCC 5 cut(s) 43, 153, 393, 621, 1069
BsiHKAI GWGCWC 1 cut(s) 242
BsiHKCI CYCGRG 1 cut(s) 141
BsiSI CCGG 4 cut(s) 150, 244, 885, 978
BslFI GGGAC 1 cut(s) 353
BslI CCNNNNNNNGG 7 cut(s) 195, 249, 250, 724, 794, 928, 1200
BsmAI GTCTC 1 cut(s) 792
BsmFI GGGAC 1 cut(s) 353
BsnI GGCC 5 cut(s) 43, 153, 393, 621, 1069
BsoBI CYCGRG 1 cut(s) 141
Bsp119I TTCGAA 2 cut(s) 123, 507
Bsp1286I GDGCHC 1 cut(s) 242
Bsp13I TCCGGA 2 cut(s) 884, 977
Bsp143I GATC 6 cut(s) 420, 463, 889, 995, 1016, 1363
BspACI CCGC 6 cut(s) 40, 108, 212, 394, 397, 964
BspANI GGCC 5 cut(s) 43, 153, 393, 621, 1069
BspCNI CTCAG 2 cut(s) 931, 1033
BspEI TCCGGA 2 cut(s) 884, 977
BspFNI CGCG 1 cut(s) 108
BspHI TCATGA 1 cut(s) 841
BspLI GGNNCC 3 cut(s) 173, 392, 1126
BspMI ACCTGC 1 cut(s) 805
BspOI GCTAGC 1 cut(s) 441
BspPI GGATC 1 cut(s) 1003
BspT104I TTCGAA 2 cut(s) 123, 507
BsrI ACTGG 3 cut(s) 922, 1310, 1392
BssECI CCNNGG 2 cut(s) 793, 1215
BssMI GATC 6 cut(s) 420, 463, 889, 995, 1016, 1363
BssT1I CCWWGG 1 cut(s) 1215
Bst2UI CCWGG 2 cut(s) 929, 1179
Bst4CI ACNGT 3 cut(s) 9, 794, 1252
Bst6I CTCTTC 2 cut(s) 106, 277
BstBI TTCGAA 2 cut(s) 123, 507
BstC8I GCNNGC 4 cut(s) 439, 526, 1036, 1107
BstDEI CTNAG 2 cut(s) 939, 1020
BstDSI CCRYGG 1 cut(s) 793
BstF5I GGATG 3 cut(s) 338, 554, 948
BstFNI CGCG 1 cut(s) 108
BstHHI GCGC 2 cut(s) 108, 554
BstKTI GATC 6 cut(s) 423, 466, 892, 998, 1019, 1366
BstMAI GTCTC 1 cut(s) 792
BstMBI GATC 6 cut(s) 420, 463, 889, 995, 1016, 1363
BstMWI GCNNNNNNNGC 1 cut(s) 208
BstNI CCWGG 2 cut(s) 929, 1179
BstNSI RCATGY 1 cut(s) 776
BstSCI CCNGG 4 cut(s) 148, 242, 927, 1177
BstUI CGCG 1 cut(s) 108
BstV1I GCAGC 1 cut(s) 100
BstV2I GAAGAC 1 cut(s) 1127
BstX2I RGATCY 2 cut(s) 889, 1016
BstXI CCANNNNNNTGG 4 cut(s) 382, 500, 617, 1243
BstYI RGATCY 2 cut(s) 889, 1016
BsuI GTATCC 2 cut(s) 878, 911
BsuRI GGCC 5 cut(s) 43, 153, 393, 621, 1069
BtgI CCRYGG 1 cut(s) 793
BtgZI GCGATG 2 cut(s) 48, 1056
BtsCI GGATG 3 cut(s) 338, 554, 948
BtsI GCAGTG 2 cut(s) 254, 1165
BtsIMutI CAGTG 2 cut(s) 254, 1165
BveI ACCTGC 1 cut(s) 805
Cac8I GCNNGC 4 cut(s) 439, 526, 1036, 1107
CaiI CAGNNNCTG 1 cut(s) 928
CciI TCATGA 1 cut(s) 841
CfoI GCGC 2 cut(s) 108, 554
Cfr13I GGNCC 3 cut(s) 152, 391, 817
CsiI ACCWGGT 1 cut(s) 1177
Csp6I GTAC 5 cut(s) 358, 776, 919, 1175, 1228
CviAII CATG 5 cut(s) 445, 735, 773, 842, 1243
CviQI GTAC 5 cut(s) 358, 776, 919, 1175, 1228
DdeI CTNAG 2 cut(s) 939, 1020
DpnI GATC 6 cut(s) 422, 465, 891, 997, 1018, 1365
DpnII GATC 6 cut(s) 420, 463, 889, 995, 1016, 1363
DraI TTTAAA 2 cut(s) 654, 1149
Eam1104I CTCTTC 2 cut(s) 106, 277
EarI CTCTTC 2 cut(s) 106, 277
Ecl136II GAGCTC 1 cut(s) 240
Eco130I CCWWGG 1 cut(s) 1215
Eco24I GRGCYC 1 cut(s) 242
Eco47I GGWCC 1 cut(s) 817
Eco53kI GAGCTC 1 cut(s) 240
Eco57I CTGAAG 2 cut(s) 997, 1121
Eco88I CYCGRG 1 cut(s) 141
EcoICRI GAGCTC 1 cut(s) 240
EcoRII CCWGG 2 cut(s) 927, 1177
EcoT14I CCWWGG 1 cut(s) 1215
EcoT22I ATGCAT 1 cut(s) 340
EcoT38I GRGCYC 1 cut(s) 242
ErhI CCWWGG 1 cut(s) 1215
FaeI CATG 5 cut(s) 448, 738, 776, 845, 1246
FalI AAGNNNNNCTT 2 cut(s) 1089, 1121
FaqI GGGAC 1 cut(s) 353
FatI CATG 5 cut(s) 444, 734, 772, 841, 1242
Fnu4HI GCNGC 5 cut(s) 41, 89, 212, 394, 397
FokI GGATG 3 cut(s) 325, 561, 935
FriOI GRGCYC 1 cut(s) 242
Fsp4HI GCNGC 5 cut(s) 41, 89, 212, 394, 397
FspBI CTAG 4 cut(s) 168, 438, 809, 1344
GlaI GCGC 2 cut(s) 107, 553
GluI GCNGC 5 cut(s) 41, 89, 212, 394, 397
HaeIII GGCC 5 cut(s) 43, 153, 393, 621, 1069
HapII CCGG 4 cut(s) 150, 244, 885, 978
HhaI GCGC 2 cut(s) 108, 554
Hin1II CATG 5 cut(s) 448, 738, 776, 845, 1246
Hin6I GCGC 2 cut(s) 106, 552
HinP1I GCGC 2 cut(s) 106, 552
HincII GTYRAC 2 cut(s) 165, 988
HindII GTYRAC 2 cut(s) 165, 988
HindIII AAGCTT 2 cut(s) 404, 1151
HinfI GANTC 8 cut(s) 220, 378, 701, 730, 910, 989, 1293, 1338
HpaII CCGG 4 cut(s) 150, 244, 885, 978
HphI GGTGA 2 cut(s) 545, 739
Hpy166II GTNNAC 9 cut(s) 56, 70, 165, 452, 517, 686, 988, 1315, 1385
Hpy188I TCNGA 9 cut(s) 48, 198, 706, 940, 953, 1000, 1016, 1023, 1292
Hpy188III TCNNGA 8 cut(s) 224, 493, 593, 830, 842, 885, 978, 993
Hpy8I GTNNAC 9 cut(s) 56, 70, 165, 452, 517, 686, 988, 1315, 1385
Hpy99I CGWCG 2 cut(s) 160, 727
HpyAV CCTTC 5 cut(s) 409, 503, 632, 1021, 1115
HpyCH4III ACNGT 3 cut(s) 9, 794, 1252
HpyCH4IV ACGT 2 cut(s) 52, 722
HpyCH4V TGCA 8 cut(s) 267, 338, 589, 738, 1044, 1109, 1158, 1163
HpyF10VI GCNNNNNNNGC 1 cut(s) 208
HpyF3I CTNAG 2 cut(s) 939, 1020
HpySE526I ACGT 2 cut(s) 52, 722
Hsp92II CATG 5 cut(s) 448, 738, 776, 845, 1246
HspAI GCGC 2 cut(s) 106, 552
Kpn2I TCCGGA 2 cut(s) 884, 977
Kzo9I GATC 6 cut(s) 420, 463, 889, 995, 1016, 1363
LmnI GCTCC 2 cut(s) 245, 1124
Lsp1109I GCAGC 1 cut(s) 100
LweI GCATC 5 cut(s) 347, 450, 539, 598, 1031
MabI ACCWGGT 1 cut(s) 1177
MaeI CTAG 4 cut(s) 168, 438, 809, 1344
MaeII ACGT 2 cut(s) 52, 722
MaeIII GTNAC 1 cut(s) 626
MalI GATC 6 cut(s) 422, 465, 891, 997, 1018, 1365
MboI GATC 6 cut(s) 420, 463, 889, 995, 1016, 1363
MboII GAAGA 5 cut(s) 123, 264, 1106, 1127, 1338
MflI RGATCY 2 cut(s) 889, 1016
MhlI GDGCHC 1 cut(s) 242
MluCI AATT 4 cut(s) 99, 296, 695, 879
MlyI GAGTC 7 cut(s) 229, 710, 739, 919, 983, 1302, 1332
MmeI TCCRAC 3 cut(s) 684, 924, 976
MnlI CCTC 8 cut(s) 16, 54, 102, 192, 451, 1084, 1267, 1328
Mph1103I ATGCAT 1 cut(s) 340
MroI TCCGGA 2 cut(s) 884, 977
MroXI GAANNNNTTC 1 cut(s) 1281
MseI TTAA 3 cut(s) 653, 1148, 1322
MslI CAYNNNNRTG 1 cut(s) 856
MspI CCGG 4 cut(s) 150, 244, 885, 978
MspR9I CCNGG 4 cut(s) 150, 244, 929, 1179
MvaI CCWGG 2 cut(s) 929, 1179
MvnI CGCG 1 cut(s) 108
MwoI GCNNNNNNNGC 1 cut(s) 208
NciI CCSGG 2 cut(s) 150, 244
NdeII GATC 6 cut(s) 420, 463, 889, 995, 1016, 1363
NheI GCTAGC 1 cut(s) 437
NlaIII CATG 5 cut(s) 448, 738, 776, 845, 1246
NlaIV GGNNCC 3 cut(s) 173, 392, 1126
NsiI ATGCAT 1 cut(s) 340
NspI RCATGY 1 cut(s) 776
NspV TTCGAA 2 cut(s) 123, 507
PagI TCATGA 1 cut(s) 841
PdmI GAANNNNTTC 1 cut(s) 1281
PfeI GAWTC 1 cut(s) 378
PflMI CCANNNNNTGG 2 cut(s) 794, 928
PkrI GCNGC 5 cut(s) 42, 90, 213, 395, 398
PleI GAGTC 7 cut(s) 228, 709, 738, 918, 983, 1301, 1332
PpsI GAGTC 7 cut(s) 228, 709, 738, 918, 983, 1301, 1332
PsiI TTATAA 3 cut(s) 315, 432, 878
Psp124BI GAGCTC 1 cut(s) 242
Psp6I CCWGG 2 cut(s) 927, 1177
PspGI CCWGG 2 cut(s) 927, 1177
PspN4I GGNNCC 3 cut(s) 173, 392, 1126
PspPI GGNCC 3 cut(s) 152, 391, 817
PstNI CAGNNNCTG 1 cut(s) 928
PsuI RGATCY 2 cut(s) 889, 1016
RsaI GTAC 5 cut(s) 359, 777, 920, 1176, 1229
RsaNI GTAC 5 cut(s) 358, 776, 919, 1175, 1228
RseI CAYNNNNRTG 1 cut(s) 856
SacI GAGCTC 1 cut(s) 242
SaqAI TTAA 3 cut(s) 653, 1148, 1322
SatI GCNGC 5 cut(s) 41, 89, 212, 394, 397
Sau3AI GATC 6 cut(s) 420, 463, 889, 995, 1016, 1363
Sau96I GGNCC 3 cut(s) 152, 391, 817
SchI GAGTC 7 cut(s) 229, 710, 739, 919, 983, 1302, 1332
ScrFI CCNGG 4 cut(s) 150, 244, 929, 1179
SduI GDGCHC 1 cut(s) 242
SexAI ACCWGGT 1 cut(s) 1177
SfaNI GCATC 5 cut(s) 347, 450, 539, 598, 1031
SfuI TTCGAA 2 cut(s) 123, 507
SinI GGWCC 1 cut(s) 817
SmiMI CAYNNNNRTG 1 cut(s) 856
Sse9I AATT 4 cut(s) 99, 296, 695, 879
SsiI CCGC 6 cut(s) 40, 108, 212, 394, 397, 964
SspMI CTAG 4 cut(s) 168, 438, 809, 1344
SstI GAGCTC 1 cut(s) 242
StyD4I CCNGG 4 cut(s) 148, 242, 927, 1177
StyI CCWWGG 1 cut(s) 1215
TaaI ACNGT 3 cut(s) 9, 794, 1252
TaiI ACGT 2 cut(s) 55, 725
TaqI TCGA 3 cut(s) 123, 223, 507
TasI AATT 4 cut(s) 99, 296, 695, 879
TatI WGTACW 2 cut(s) 357, 775
TauI GCSGC 4 cut(s) 43, 214, 396, 399
TfiI GAWTC 1 cut(s) 378
Tru1I TTAA 3 cut(s) 653, 1148, 1322
Tru9I TTAA 3 cut(s) 653, 1148, 1322
TscAI CASTG 2 cut(s) 254, 1165
TseI GCWGC 1 cut(s) 88
TspDTI ATGAA 3 cut(s) 17, 924, 1231
TspGWI ACGGA 2 cut(s) 427, 809
TspRI CASTG 2 cut(s) 254, 1165
Van91I CCANNNNNTGG 2 cut(s) 794, 928
VpaK11BI GGWCC 1 cut(s) 817
XapI RAATTY 1 cut(s) 296
XceI RCATGY 1 cut(s) 776
XmnI GAANNNNTTC 1 cut(s) 1281
XspI CTAG 4 cut(s) 168, 438, 809, 1344
Zsp2I ATGCAT 1 cut(s) 340
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.