Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8209176.1

Orthogroup ID

OG0003003

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 723

Gene Structure 723 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8209176.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

gttcgactgtttcttgaaaaagcttacaagctgtcactagagtggggatctatccctgttataattgctggggatctaaatagcactccacagagtcctatttaccagtttctagcttcatctcagttagacatccaacgacatgaccgcagacgtgtctcaggacagattgaatttgaatcgcagtacagaaccttcacgtataacaggtttggaaagccattcttttatagatggagtgcggaagaagtaaggcttgcaacgggctgtgaagaagtcactcatctccaacaccatctaaagcttggcagtgcatatcttggagtacctgtaagacct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

113

Amino Acids

13.14

Weight (kDa)

9.21

Isoelectric Point (pI)

55.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003003)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73875 AT1G73875 AT1G73875
fragaria_vesca	FvH4_5g12230 FvH4_5g12230 FvH4_5g12230 FvH4_5g12230 FvH4_5g12230 FvH4_5g12230 FvH4_5g12230 FvH4_5g12230
malus_domestica	MD06G1215600.v1.1
prunus_persica	Prupe.5G220800_v2.0.a1 Prupe.5G220800_v2.0.a1 Prupe.5G220800_v2.0.a1 Prupe.5G220800_v2.0.a1 Prupe.5G220800_v2.0.a1 Prupe.5G220800_v2.0.a1 Prupe.5G220800_v2.0.a1 Prupe.5G220800_v2.0.a1 Prupe.5G220800_v2.0.a1 Prupe.5G220800_v2.0.a1 Prupe.5G220800_v2.0.a1 Prupe.5G220800_v2.0.a1
pyrus_communis	pycom06g19230
rosa_chinensis	RchiOBHm_Chr7g0185351
rosa_laevigata	RLG00000004920
rosa_multiflora	Rmu_co8209176.1_g000001 Rmu_sc0001761.1_g000015 Rmu_sc0008496.1_g000004 Rmu_sc0038524.1_g000001
rosa_roxburghii	Rroxscaffold_3G00269030
rosa_rugosa	Rorug06G0468200
rosa_samantha	Rh7AG074500 Rh7BG072700 Rh7CG073700 Rh7DG073300
rosa_wichuraiana	Rw7G006090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	62
AciI	CCGC	2 cut(s)	148, 242
AclWI	GGATC	2 cut(s)	55, 81
AcsI	RAATTY	1 cut(s)	173
AfaI	GTAC	2 cut(s)	188, 327
AflIII	ACRYGT	1 cut(s)	154
AgsI	TTSAA	3 cut(s)	17, 173, 179
AjiI	CACGTC	1 cut(s)	155
AleI	CACNNNNGTG	1 cut(s)	40
AluBI	AGCT	4 cut(s)	23, 31, 116, 304
AluI	AGCT	4 cut(s)	23, 31, 116, 304
Alw26I	GTCTC	1 cut(s)	163
AlwI	GGATC	2 cut(s)	55, 81
ApoI	RAATTY	1 cut(s)	173
BarI	GAAGNNNNNNTAC	2 cut(s)	179, 211
BccI	CCATC	2 cut(s)	228, 303
BcoDI	GTCTC	1 cut(s)	163
BfaI	CTAG	2 cut(s)	38, 113
BmgBI	CACGTC	1 cut(s)	155
BsaAI	YACGTR	1 cut(s)	201
BsaXI	ACNNNNNCTCC	1 cut(s)	315
Bse1I	ACTGG	1 cut(s)	106
BseGI	GGATG	1 cut(s)	132
BseMII	CTCAG	2 cut(s)	137, 174
BseNI	ACTGG	1 cut(s)	106
BseYI	CCCAGC	1 cut(s)	68
BsmAI	GTCTC	1 cut(s)	163
Bsp143I	GATC	2 cut(s)	47, 73
BspACI	CCGC	2 cut(s)	148, 242
BspCNI	CTCAG	2 cut(s)	136, 173
BspPI	GGATC	2 cut(s)	55, 81
BsrI	ACTGG	1 cut(s)	106
BssMI	GATC	2 cut(s)	47, 73
Bst4CI	ACNGT	1 cut(s)	9
BstBAI	YACGTR	1 cut(s)	201
BstC8I	GCNNGC	1 cut(s)	258
BstDEI	CTNAG	2 cut(s)	123, 160
BstF5I	GGATG	1 cut(s)	132
BstKTI	GATC	2 cut(s)	50, 76
BstMAI	GTCTC	1 cut(s)	163
BstMBI	GATC	2 cut(s)	47, 73
BstX2I	RGATCY	2 cut(s)	47, 73
BstYI	RGATCY	2 cut(s)	47, 73
BtrI	CACGTC	1 cut(s)	155
BtsCI	GGATG	1 cut(s)	132
BtsI	GCAGTG	1 cut(s)	316
BtsIMutI	CAGTG	1 cut(s)	316
Cac8I	GCNNGC	1 cut(s)	258
Csp6I	GTAC	2 cut(s)	187, 326
CviAII	CATG	1 cut(s)	143
CviJI	RGCY	7 cut(s)	23, 31, 116, 220, 256, 267, 304
CviKI_1	RGCY	7 cut(s)	23, 31, 116, 220, 256, 267, 304
CviQI	GTAC	2 cut(s)	187, 326
DdeI	CTNAG	2 cut(s)	123, 160
DpnI	GATC	2 cut(s)	49, 75
DpnII	GATC	2 cut(s)	47, 73
FaeI	CATG	1 cut(s)	146
FaiI	YATR	5 cut(s)	62, 144, 204, 231, 316
FalI	AAGNNNNNCTT	4 cut(s)	209, 241, 240, 272
FatI	CATG	1 cut(s)	142
FokI	GGATG	1 cut(s)	119
FspBI	CTAG	2 cut(s)	38, 113
GsaI	CCCAGC	1 cut(s)	72
Hin1II	CATG	1 cut(s)	146
HindIII	AAGCTT	2 cut(s)	21, 302
HinfI	GANTC	2 cut(s)	94, 179
Hpy188III	TCNNGA	2 cut(s)	14, 162
HpyAV	CCTTC	1 cut(s)	205
HpyCH4III	ACNGT	1 cut(s)	9
HpyCH4IV	ACGT	2 cut(s)	154, 200
HpyCH4V	TGCA	2 cut(s)	260, 314
HpyF3I	CTNAG	2 cut(s)	123, 160
HpySE526I	ACGT	2 cut(s)	154, 200
Hsp92II	CATG	1 cut(s)	146
Kzo9I	GATC	2 cut(s)	47, 73
LpnPI	CCDG	5 cut(s)	54, 69, 119, 147, 193
MaeI	CTAG	2 cut(s)	38, 113
MaeII	ACGT	2 cut(s)	154, 200
MaeIII	GTNAC	2 cut(s)	33, 277
MalI	GATC	2 cut(s)	49, 75
MboI	GATC	2 cut(s)	47, 73
MboII	GAAGA	2 cut(s)	257, 284
MflI	RGATCY	2 cut(s)	47, 73
MluCI	AATT	2 cut(s)	63, 173
MlyI	GAGTC	1 cut(s)	103
MmeI	TCCRAC	2 cut(s)	160, 313
MslI	CAYNNNNRTG	1 cut(s)	40
NdeII	GATC	2 cut(s)	47, 73
NlaIII	CATG	1 cut(s)	146
NmuCI	GTSAC	2 cut(s)	33, 277
OliI	CACNNNNGTG	1 cut(s)	40
PfeI	GAWTC	1 cut(s)	179
PleI	GAGTC	1 cut(s)	102
PpsI	GAGTC	1 cut(s)	102
Ppu21I	YACGTR	1 cut(s)	201
PsiI	TTATAA	1 cut(s)	62
PspFI	CCCAGC	1 cut(s)	68
PsuI	RGATCY	2 cut(s)	47, 73
RsaI	GTAC	2 cut(s)	188, 327
RsaNI	GTAC	2 cut(s)	187, 326
RseI	CAYNNNNRTG	1 cut(s)	40
Sau3AI	GATC	2 cut(s)	47, 73
SchI	GAGTC	1 cut(s)	103
SetI	ASST	9 cut(s)	25, 33, 118, 157, 197, 203, 212, 306, 331
SmiMI	CAYNNNNRTG	1 cut(s)	40
Sse9I	AATT	2 cut(s)	63, 173
SsiI	CCGC	2 cut(s)	148, 242
SspMI	CTAG	2 cut(s)	38, 113
TaaI	ACNGT	1 cut(s)	9
TaiI	ACGT	2 cut(s)	157, 203
TaqI	TCGA	1 cut(s)	4
TasI	AATT	2 cut(s)	63, 173
TatI	WGTACW	1 cut(s)	186
TfiI	GAWTC	1 cut(s)	179
TscAI	CASTG	1 cut(s)	316
TseFI	GTSAC	2 cut(s)	33, 277
Tsp45I	GTSAC	2 cut(s)	33, 277
TspDTI	ATGAA	1 cut(s)	108
TspRI	CASTG	1 cut(s)	316
XapI	RAATTY	1 cut(s)	173
XcmI	CCANNNNNNNNNTGG	1 cut(s)	302
XspI	CTAG	2 cut(s)	38, 113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.