AT1G74200

regulation of response to stimulus

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0016681
Physical Location & Seq
Reverse (-)
27906909 .. 27909358
2450 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G74200.2

Sequence Viewer

Length: 909 bp
ATGAATCTAACGACTAATGGTTTTCAAAGAAATCTACCATCTTCTCTGGGTAACATGGAAATGATTGAATTTCTGGATATATCTCACAACAGTTTCCATGGGAAGCTACCAAGAAGTTTTTTGAAGGGTTGTGATTCCTTGATAGTCTTGAAACTATCACATAAGAAACTAAGTGAGGAGGTTTTTCCAGAAGCATCAAACTTTTTTTCAATACTAGAGCTGTCTATGGATAACAATCTGTTTACAGGAAAGATTGGAAGAGGTTTGCAGAGCTTGAGATCTTTGATTATGCTTGACATTTCGAACAACAATCTCTCAGGTGTTATTCCAAGTTGGTTTGACCAACTTCAAGACTTACATTCGCTACAGATTTCTAACAACTTGTTGGAAGGTGAAGTACCTATATCGTTATTCAACATGTCCAGTCTTCAACTACTGGCCCTCTCTGCAAACAGTTTATCAGGGGACTTACCTCAAGCCATTTCTGGATATGGGGCATTAAAAGTGTTACTCCTGCGAGACAATAATTTATCAGGGGTTATTCCAGATACACTGCTAGGGAAGAATATCATTGTGCTTGATCTGAGAAATAACAGATTGTCTGGGAATATTCCGGAGTTCATCAACACCCAATACATCAGAATTCTTCTTCTCCGAGGGAATAATTTAACAGGCAGTATTCCTCGCCGGTTGTGTGCCGTAAGAAGCATTCACCTCCTGGATCTTGCTAACAACAAATTAAATGGATCCATACCTTCATGTCTTAGGAATGCATCACTTGGTTTGGGGAGAGGAGGATACATTAGACGATTATTTATAATCATTACGTTTTTTCTTTGGGAGCACCTGTCAGTACATTTTTCAAATCTCTGCTCGTGCAAGATGGGTTTGCTATCGATTATGAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8

Protein Analysis

302

Amino Acids

33.46

Weight (kDa)

9.06

Isoelectric Point (pI)

44.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 74 - 129 4e-06 Leucine rich repeat
LRR_8 PF13855 94 - 153 1.9e-08 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016681)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G74200 AT1G74200 AT1G74200
malus_domestica MD10G1178000.v1.1
rosa_chinensis RchiOBHm_Chr2g0137671
rosa_laevigata RLG00000009540 RLG00000023880
rosa_roxburghii Rroxscaffold_4G00287120
rosa_samantha Rh2AG359700 Rh2AG462200 Rh4DG211200 Rh4DG239300 Rh7AG276800
rosa_wichuraiana Rw4G018920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 818
AccIII TCCGGA 1 cut(s) 613
AclWI GGATC 3 cut(s) 729, 741, 754
AcsI RAATTY 2 cut(s) 68, 642
AfaI GTAC 2 cut(s) 399, 855
AflIII ACRYGT 1 cut(s) 417
AgsI TTSAA 9 cut(s) 26, 68, 124, 151, 210, 350, 415, 431, 864
AjnI CCWGG 1 cut(s) 717
AluBI AGCT 3 cut(s) 106, 220, 273
AluI AGCT 3 cut(s) 106, 220, 273
Alw21I GWGCWC 1 cut(s) 846
Alw26I GTCTC 1 cut(s) 513
AlwI GGATC 3 cut(s) 729, 741, 754
Aor13HI TCCGGA 1 cut(s) 613
AoxI GGCC 1 cut(s) 438
ApoI RAATTY 2 cut(s) 68, 642
AspS9I GGNCC 1 cut(s) 439
AsuHPI GGTGA 2 cut(s) 404, 704
AsuII TTCGAA 1 cut(s) 302
BamHI GGATCC 1 cut(s) 746
BarI GAAGNNNNNNTAC 2 cut(s) 381, 413
BauI CACGAG 1 cut(s) 874
BbsI GAAGAC 1 cut(s) 419
Bbv12I GWGCWC 1 cut(s) 846
BccI CCATC 2 cut(s) 46, 877
BceAI ACGGC 1 cut(s) 683
BciT130I CCWGG 1 cut(s) 719
BciVI GTATCC 1 cut(s) 791
BcoDI GTCTC 1 cut(s) 513
BfaI CTAG 2 cut(s) 215, 557
BfmI CTRYAG 1 cut(s) 365
BfuI GTATCC 1 cut(s) 791
BglII AGATCT 1 cut(s) 278
Bme1390I CCNGG 1 cut(s) 719
BmgT120I GGNCC 1 cut(s) 439
BmiI GGNNCC 1 cut(s) 748
BmrFI CCNGG 1 cut(s) 719
BmsI GCATC 2 cut(s) 203, 782
BpiI GAAGAC 1 cut(s) 419
Bpu14I TTCGAA 1 cut(s) 302
BpuEI CTTGAG 2 cut(s) 295, 459
Bsa29I ATCGAT 1 cut(s) 896
BsaBI GATNNNNATC 1 cut(s) 234
BsaJI CCNNGG 2 cut(s) 97, 655
BsaWI WCCGGW 1 cut(s) 613
BsaXI ACNNNNNCTCC 2 cut(s) 833, 863
Bse118I RCCGGY 1 cut(s) 687
Bse1I ACTGG 2 cut(s) 423, 441
Bse8I GATNNNNATC 1 cut(s) 234
BseAI TCCGGA 1 cut(s) 613
BseBI CCWGG 1 cut(s) 719
BseCI ATCGAT 1 cut(s) 896
BseDI CCNNGG 2 cut(s) 97, 655
BseJI GATNNNNATC 1 cut(s) 234
BseMII CTCAG 2 cut(s) 330, 575
BseNI ACTGG 2 cut(s) 423, 441
BseRI GAGGAG 2 cut(s) 191, 807
BshFI GGCC 1 cut(s) 440
BshVI ATCGAT 1 cut(s) 896
BsiHKAI GWGCWC 1 cut(s) 846
BsiSI CCGG 2 cut(s) 614, 688
BslFI GGGAC 1 cut(s) 479
BsmAI GTCTC 1 cut(s) 513
BsmFI GGGAC 1 cut(s) 479
BsmI GAATGC 2 cut(s) 708, 775
BsnI GGCC 1 cut(s) 440
Bsp119I TTCGAA 1 cut(s) 302
Bsp1286I GDGCHC 1 cut(s) 846
Bsp13I TCCGGA 1 cut(s) 613
Bsp143I GATC 4 cut(s) 278, 580, 721, 746
Bsp19I CCATGG 1 cut(s) 97
BspANI GGCC 1 cut(s) 440
BspCNI CTCAG 2 cut(s) 329, 576
BspDI ATCGAT 1 cut(s) 896
BspEI TCCGGA 1 cut(s) 613
BspLI GGNNCC 1 cut(s) 748
BspPI GGATC 3 cut(s) 729, 741, 754
BspT104I TTCGAA 1 cut(s) 302
BsrFI RCCGGY 1 cut(s) 687
BsrI ACTGG 2 cut(s) 423, 441
BssAI RCCGGY 1 cut(s) 687
BssECI CCNNGG 2 cut(s) 97, 655
BssMI GATC 4 cut(s) 278, 580, 721, 746
BssSI CACGAG 1 cut(s) 874
BssT1I CCWWGG 1 cut(s) 97
Bst2BI CACGAG 1 cut(s) 874
Bst2UI CCWGG 1 cut(s) 719
Bst4CI ACNGT 2 cut(s) 92, 455
Bst6I CTCTTC 1 cut(s) 253
BstBI TTCGAA 1 cut(s) 302
BstDEI CTNAG 4 cut(s) 170, 316, 584, 764
BstDSI CCRYGG 1 cut(s) 97
BstKTI GATC 4 cut(s) 281, 583, 724, 749
BstMAI GTCTC 1 cut(s) 513
BstMBI GATC 4 cut(s) 278, 580, 721, 746
BstMWI GCNNNNNNNGC 1 cut(s) 446
BstNI CCWGG 1 cut(s) 719
BstNSI RCATGY 1 cut(s) 421
BstSCI CCNGG 1 cut(s) 717
BstSFI CTRYAG 1 cut(s) 365
BstV2I GAAGAC 1 cut(s) 419
BstX2I RGATCY 3 cut(s) 278, 721, 746
BstYI RGATCY 3 cut(s) 278, 721, 746
Bsu15I ATCGAT 1 cut(s) 896
BsuI GTATCC 1 cut(s) 791
BsuRI GGCC 1 cut(s) 440
BsuTUI ATCGAT 1 cut(s) 896
BtgI CCRYGG 1 cut(s) 97
BtsI GCAGTG 1 cut(s) 551
BtsIMutI CAGTG 1 cut(s) 551
Cfr10I RCCGGY 1 cut(s) 687
Cfr13I GGNCC 1 cut(s) 439
ClaI ATCGAT 1 cut(s) 896
Csp6I GTAC 2 cut(s) 398, 854
CviAII CATG 4 cut(s) 55, 98, 418, 759
CviJI RGCY 5 cut(s) 106, 220, 273, 440, 479
CviKI_1 RGCY 5 cut(s) 106, 220, 273, 440, 479
CviQI GTAC 2 cut(s) 398, 854
DdeI CTNAG 4 cut(s) 170, 316, 584, 764
DpnI GATC 4 cut(s) 280, 582, 723, 748
DpnII GATC 4 cut(s) 278, 580, 721, 746
Eam1104I CTCTTC 1 cut(s) 253
EarI CTCTTC 1 cut(s) 253
Eco130I CCWWGG 1 cut(s) 97
EcoRI GAATTC 1 cut(s) 642
EcoRII CCWGG 1 cut(s) 717
EcoT14I CCWWGG 1 cut(s) 97
EcoT22I ATGCAT 1 cut(s) 775
ErhI CCWWGG 1 cut(s) 97
FaeI CATG 4 cut(s) 58, 101, 421, 762
FaqI GGGAC 1 cut(s) 479
FatI CATG 4 cut(s) 54, 97, 417, 758
FspBI CTAG 2 cut(s) 215, 557
HaeIII GGCC 1 cut(s) 440
HapII CCGG 2 cut(s) 614, 688
Hin1II CATG 4 cut(s) 58, 101, 421, 762
HinfI GANTC 2 cut(s) 4, 134
HpaII CCGG 2 cut(s) 614, 688
HphI GGTGA 2 cut(s) 404, 704
Hpy166II GTNNAC 1 cut(s) 243
Hpy188I TCNGA 3 cut(s) 585, 641, 656
Hpy188III TCNNGA 7 cut(s) 74, 148, 188, 350, 486, 545, 614
Hpy8I GTNNAC 1 cut(s) 243
HpyAV CCTTC 3 cut(s) 118, 383, 765
HpyCH4III ACNGT 2 cut(s) 92, 455
HpyCH4IV ACGT 1 cut(s) 827
HpyCH4V TGCA 4 cut(s) 268, 449, 773, 879
HpyF10VI GCNNNNNNNGC 1 cut(s) 446
HpyF3I CTNAG 4 cut(s) 170, 316, 584, 764
HpySE526I ACGT 1 cut(s) 827
Hsp92II CATG 4 cut(s) 58, 101, 421, 762
Kpn2I TCCGGA 1 cut(s) 613
Kzo9I GATC 4 cut(s) 278, 580, 721, 746
LmnI GCTCC 1 cut(s) 841
LweI GCATC 2 cut(s) 203, 782
MaeI CTAG 2 cut(s) 215, 557
MaeII ACGT 1 cut(s) 827
MaeIII GTNAC 2 cut(s) 50, 507
MalI GATC 4 cut(s) 280, 582, 723, 748
MboI GATC 4 cut(s) 278, 580, 721, 746
MboII GAAGA 6 cut(s) 33, 270, 419, 574, 638, 641
MflI RGATCY 3 cut(s) 278, 721, 746
MhlI GDGCHC 1 cut(s) 846
MluCI AATT 5 cut(s) 68, 526, 642, 664, 737
MmeI TCCRAC 1 cut(s) 366
Mph1103I ATGCAT 1 cut(s) 775
MroI TCCGGA 1 cut(s) 613
MseI TTAA 4 cut(s) 500, 668, 740, 907
MslI CAYNNNNRTG 1 cut(s) 59
MspI CCGG 2 cut(s) 614, 688
MspR9I CCNGG 1 cut(s) 719
Mva1269I GAATGC 2 cut(s) 708, 775
MvaI CCWGG 1 cut(s) 719
MwoI GCNNNNNNNGC 1 cut(s) 446
NcoI CCATGG 1 cut(s) 97
NdeII GATC 4 cut(s) 278, 580, 721, 746
NlaIII CATG 4 cut(s) 58, 101, 421, 762
NlaIV GGNNCC 1 cut(s) 748
NsiI ATGCAT 1 cut(s) 775
NspI RCATGY 1 cut(s) 421
NspV TTCGAA 1 cut(s) 302
PciI ACATGT 1 cut(s) 417
PctI GAATGC 2 cut(s) 708, 775
PfeI GAWTC 2 cut(s) 4, 134
PfoI TCCNGGA 1 cut(s) 717
PscI ACATGT 1 cut(s) 417
PsiI TTATAA 1 cut(s) 818
Psp6I CCWGG 1 cut(s) 717
PspGI CCWGG 1 cut(s) 717
PspN4I GGNNCC 1 cut(s) 748
PspPI GGNCC 1 cut(s) 439
PsuI RGATCY 3 cut(s) 278, 721, 746
RsaI GTAC 2 cut(s) 399, 855
RsaNI GTAC 2 cut(s) 398, 854
RseI CAYNNNNRTG 1 cut(s) 59
SaqAI TTAA 4 cut(s) 500, 668, 740, 907
Sau3AI GATC 4 cut(s) 278, 580, 721, 746
Sau96I GGNCC 1 cut(s) 439
ScrFI CCNGG 1 cut(s) 719
SduI GDGCHC 1 cut(s) 846
SfaNI GCATC 2 cut(s) 203, 782
SfcI CTRYAG 1 cut(s) 365
SfuI TTCGAA 1 cut(s) 302
SmiMI CAYNNNNRTG 1 cut(s) 59
SmlI CTYRAG 2 cut(s) 274, 474
SmoI CTYRAG 2 cut(s) 274, 474
Sse9I AATT 5 cut(s) 68, 526, 642, 664, 737
SspI AATATT 1 cut(s) 610
SspMI CTAG 2 cut(s) 215, 557
StyD4I CCNGG 1 cut(s) 717
StyI CCWWGG 1 cut(s) 97
TaaI ACNGT 2 cut(s) 92, 455
TaiI ACGT 1 cut(s) 830
TaqI TCGA 2 cut(s) 302, 896
TasI AATT 5 cut(s) 68, 526, 642, 664, 737
TatI WGTACW 1 cut(s) 853
TfiI GAWTC 2 cut(s) 4, 134
Tru1I TTAA 4 cut(s) 500, 668, 740, 907
Tru9I TTAA 4 cut(s) 500, 668, 740, 907
TscAI CASTG 1 cut(s) 558
TspDTI ATGAA 3 cut(s) 17, 610, 747
TspRI CASTG 1 cut(s) 558
XapI RAATTY 2 cut(s) 68, 642
XceI RCATGY 1 cut(s) 421
XspI CTAG 2 cut(s) 215, 557
Zsp2I ATGCAT 1 cut(s) 775
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.