Rh7AG276800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0016681
Physical Location & Seq
Forward (+)
28991004 .. 29005978
14975 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG276800.1

Sequence Viewer

Length: 186 bp
ATGGCCTCTTCTCAAATTCAGGTGCCTCCGCCCCCTGCAGTACCGGTGCCCTTTGTGGTGATACCAGTTTCCGATGAAGATTCTCCAGAGCGTCTTAACATGTCCGTTCCCACTAGGCTCCCAGCTGATGATCGAGTAGTGGAGGAGATCCCCGCGACAAATGAAACCAAAATGGAAGCTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

61

Amino Acids

6.63

Weight (kDa)

4.14

Isoelectric Point (pI)

92.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016681)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G74200 AT1G74200 AT1G74200
malus_domestica MD10G1178000.v1.1
rosa_chinensis RchiOBHm_Chr2g0137671
rosa_laevigata RLG00000009540 RLG00000023880
rosa_roxburghii Rroxscaffold_4G00287120
rosa_samantha Rh2AG359700 Rh2AG462200 Rh4DG211200 Rh4DG239300 Rh7AG276800
rosa_wichuraiana Rw4G018920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 22, 46
AccII CGCG 1 cut(s) 155
AciI CCGC 2 cut(s) 29, 153
AclWI GGATC 1 cut(s) 142
AcsI RAATTY 1 cut(s) 15
AfaI GTAC 1 cut(s) 42
AflIII ACRYGT 1 cut(s) 99
AgeI ACCGGT 1 cut(s) 43
AluBI AGCT 2 cut(s) 125, 179
AluI AGCT 2 cut(s) 125, 179
AlwI GGATC 1 cut(s) 142
AoxI GGCC 1 cut(s) 3
ApoI RAATTY 1 cut(s) 15
AsiGI ACCGGT 1 cut(s) 43
AsuHPI GGTGA 1 cut(s) 70
BaeGI GKGCMC 1 cut(s) 51
BanI GGYRCC 2 cut(s) 22, 46
BfaI CTAG 1 cut(s) 114
BfmI CTRYAG 1 cut(s) 36
BmiI GGNNCC 3 cut(s) 24, 48, 119
BpmI CTGGAG 1 cut(s) 69
BsaWI WCCGGW 1 cut(s) 43
Bse118I RCCGGY 1 cut(s) 43
Bse1I ACTGG 1 cut(s) 65
BseNI ACTGG 1 cut(s) 65
BseRI GAGGAG 1 cut(s) 158
BseSI GKGCMC 1 cut(s) 51
BseYI CCCAGC 1 cut(s) 121
Bsh1236I CGCG 1 cut(s) 155
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 2 cut(s) 22, 46
BshTI ACCGGT 1 cut(s) 43
BsiSI CCGG 1 cut(s) 44
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 1 cut(s) 51
Bsp143I GATC 2 cut(s) 130, 147
BspACI CCGC 2 cut(s) 29, 153
BspANI GGCC 1 cut(s) 5
BspFNI CGCG 1 cut(s) 155
BspLI GGNNCC 3 cut(s) 24, 48, 119
BspMAI CTGCAG 1 cut(s) 40
BspPI GGATC 1 cut(s) 142
BspT107I GGYRCC 2 cut(s) 22, 46
BsrFI RCCGGY 1 cut(s) 43
BsrI ACTGG 1 cut(s) 65
BssAI RCCGGY 1 cut(s) 43
BssMI GATC 2 cut(s) 130, 147
Bst6I CTCTTC 1 cut(s) 13
BstFNI CGCG 1 cut(s) 155
BstKTI GATC 2 cut(s) 133, 150
BstMBI GATC 2 cut(s) 130, 147
BstNSI RCATGY 1 cut(s) 103
BstSFI CTRYAG 1 cut(s) 36
BstSLI GKGCMC 1 cut(s) 51
BstUI CGCG 1 cut(s) 155
BstX2I RGATCY 1 cut(s) 147
BstYI RGATCY 1 cut(s) 147
BsuRI GGCC 1 cut(s) 5
Cfr10I RCCGGY 1 cut(s) 43
CseI GACGC 1 cut(s) 80
Csp6I GTAC 1 cut(s) 41
CspAI ACCGGT 1 cut(s) 43
CviAII CATG 1 cut(s) 100
CviJI RGCY 4 cut(s) 5, 118, 125, 179
CviKI_1 RGCY 4 cut(s) 5, 118, 125, 179
CviQI GTAC 1 cut(s) 41
DpnI GATC 2 cut(s) 132, 149
DpnII GATC 2 cut(s) 130, 147
Eam1104I CTCTTC 1 cut(s) 13
EarI CTCTTC 1 cut(s) 13
EciI GGCGGA 1 cut(s) 18
FaeI CATG 1 cut(s) 103
FaiI YATR 2 cut(s) 101, 182
FatI CATG 1 cut(s) 99
FauI CCCGC 1 cut(s) 160
FspBI CTAG 1 cut(s) 114
GsaI CCCAGC 1 cut(s) 125
GsuI CTGGAG 1 cut(s) 69
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 44
HgaI GACGC 1 cut(s) 80
Hin1II CATG 1 cut(s) 103
HinfI GANTC 1 cut(s) 80
HpaII CCGG 1 cut(s) 44
HphI GGTGA 1 cut(s) 70
Hpy188I TCNGA 1 cut(s) 73
Hpy188III TCNNGA 1 cut(s) 86
HpyCH4V TGCA 1 cut(s) 38
Hsp92II CATG 1 cut(s) 103
Kzo9I GATC 2 cut(s) 130, 147
LmnI GCTCC 1 cut(s) 123
LpnPI CCDG 6 cut(s) 5, 48, 57, 78, 99, 135
MaeI CTAG 1 cut(s) 114
MalI GATC 2 cut(s) 132, 149
MboI GATC 2 cut(s) 130, 147
MboII GAAGA 1 cut(s) 89
MflI RGATCY 1 cut(s) 147
MhlI GDGCHC 1 cut(s) 51
MluCI AATT 1 cut(s) 15
MnlI CCTC 3 cut(s) 16, 36, 136
MseI TTAA 1 cut(s) 96
MspA1I CMGCKG 1 cut(s) 125
MspI CCGG 1 cut(s) 44
MvnI CGCG 1 cut(s) 155
NdeII GATC 2 cut(s) 130, 147
NlaIII CATG 1 cut(s) 103
NlaIV GGNNCC 3 cut(s) 24, 48, 119
NspI RCATGY 1 cut(s) 103
PciI ACATGT 1 cut(s) 99
PfeI GAWTC 1 cut(s) 80
PinAI ACCGGT 1 cut(s) 43
PscI ACATGT 1 cut(s) 99
PspFI CCCAGC 1 cut(s) 121
PspN4I GGNNCC 3 cut(s) 24, 48, 119
PstI CTGCAG 1 cut(s) 40
PsuI RGATCY 1 cut(s) 147
PvuII CAGCTG 1 cut(s) 125
RsaI GTAC 1 cut(s) 42
RsaNI GTAC 1 cut(s) 41
SaqAI TTAA 1 cut(s) 96
Sau3AI GATC 2 cut(s) 130, 147
SduI GDGCHC 1 cut(s) 51
SetI ASST 3 cut(s) 24, 127, 181
SfcI CTRYAG 1 cut(s) 36
Sse9I AATT 1 cut(s) 15
SsiI CCGC 2 cut(s) 29, 153
SspMI CTAG 1 cut(s) 114
TaqI TCGA 1 cut(s) 133
TasI AATT 1 cut(s) 15
TfiI GAWTC 1 cut(s) 80
Tru1I TTAA 1 cut(s) 96
Tru9I TTAA 1 cut(s) 96
TspDTI ATGAA 2 cut(s) 90, 177
TspGWI ACGGA 1 cut(s) 94
XapI RAATTY 1 cut(s) 15
XceI RCATGY 1 cut(s) 103
XspI CTAG 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.