Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0016681

Physical Location & Seq

Genomic Coordinates Forward (+)

40624974 .. 40630924

Gene Structure 5951 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG211200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGCCTCTTGGCAAATTCAGGCGCCTCTGCCCCCTGCAGTACCGGTGCCCGTTGTGGTGATACCAGTTTCCGATGAAGATTCTCCAGAAAGTCTTAACATAGTGTTGGCAGATATAGGTTTGAAAGGCCGGCTACCCACTGATATCGAGTTGTTATCTGAGCTACAAATTCTGAATTTATCTTTCAACAAGGGCCTCACAGGACAACTTCGAGCTTCAATTGGAAAATTGACGAAACTAGTACACTTAAACCTGGTTGGTTGCAGTTTCTTTGGTCCTATTCCAGATGCTAGAGGATCTCTAACGAAGCTGTCTTACCTTCATTTTGGGAACAACCAGCTCTCGGGCCCAATTCCACCTCGACTTTTCAGCTCAACGATGGCCATGATACATTTAATTTTTGACAGAAACAATCTTAGTGGTAGCATCCCTTCAACTGTTGGACTTGTTCAGACATTGCTGGCGGTACGCCTGGATGGAAATTCATTAAGTGGGTGTATGCCTTCGAGCCTCAACAACCTTACTAATGTGTCTGAACTGCAAGCATGGGAGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

185

Amino Acids

19.76

Weight (kDa)

5.85

Isoelectric Point (pI)

42.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016681)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74200 AT1G74200 AT1G74200
malus_domestica	MD10G1178000.v1.1
rosa_chinensis	RchiOBHm_Chr2g0137671
rosa_laevigata	RLG00000009540 RLG00000023880
rosa_roxburghii	Rroxscaffold_4G00287120
rosa_samantha	Rh2AG359700 Rh2AG462200 Rh4DG211200 Rh4DG239300 Rh7AG276800
rosa_wichuraiana	Rw4G018920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	22, 46
AciI	CCGC	1 cut(s)	464
AclWI	GGATC	1 cut(s)	304
AcoI	YGGCCR	1 cut(s)	381
AcsI	RAATTY	4 cut(s)	15, 168, 175, 481
AcyI	GRCGYC	1 cut(s)	23
AfaI	GTAC	3 cut(s)	42, 243, 468
AfiI	CCNNNNNNNGG	1 cut(s)	343
AgeI	ACCGGT	1 cut(s)	43
AgsI	TTSAA	4 cut(s)	124, 187, 219, 435
AhlI	ACTAGT	1 cut(s)	238
AjnI	CCWGG	2 cut(s)	252, 471
AluBI	AGCT	5 cut(s)	163, 215, 310, 340, 372
AluI	AGCT	5 cut(s)	163, 215, 310, 340, 372
AlwI	GGATC	1 cut(s)	304
Ama87I	CYCGRG	1 cut(s)	343
AoxI	GGCC	5 cut(s)	3, 127, 193, 346, 381
ApaI	GGGCCC	1 cut(s)	350
ApoI	RAATTY	4 cut(s)	15, 168, 175, 481
AsiGI	ACCGGT	1 cut(s)	43
AspLEI	GCGC	1 cut(s)	25
AspS9I	GGNCC	4 cut(s)	193, 275, 346, 347
AsuHPI	GGTGA	1 cut(s)	70
AvaI	CYCGRG	1 cut(s)	343
AvaII	GGWCC	1 cut(s)	275
BaeGI	GKGCMC	2 cut(s)	51, 350
BalI	TGGCCA	1 cut(s)	383
BanI	GGYRCC	2 cut(s)	22, 46
BanII	GRGCYC	1 cut(s)	350
BarI	GAAGNNNNNNTAC	4 cut(s)	299, 331, 415, 447
BccI	CCATC	2 cut(s)	373, 470
BciT130I	CCWGG	2 cut(s)	254, 473
BcuI	ACTAGT	1 cut(s)	238
BfaI	CTAG	2 cut(s)	239, 291
BfmI	CTRYAG	1 cut(s)	36
BfoI	RGCGCY	1 cut(s)	26
Bme1390I	CCNGG	2 cut(s)	254, 473
Bme18I	GGWCC	1 cut(s)	275
BmeT110I	CYCGRG	1 cut(s)	343
BmgT120I	GGNCC	4 cut(s)	193, 275, 346, 347
BmiI	GGNNCC	3 cut(s)	24, 48, 348
BmrFI	CCNGG	2 cut(s)	254, 473
BmsI	GCATC	2 cut(s)	277, 435
BpmI	CTGGAG	1 cut(s)	69
BsaHI	GRCGYC	1 cut(s)	23
BsaWI	WCCGGW	1 cut(s)	43
Bsc4I	CCNNNNNNNGG	1 cut(s)	343
Bse118I	RCCGGY	2 cut(s)	43, 129
Bse1I	ACTGG	1 cut(s)	65
Bse3DI	GCAATG	1 cut(s)	455
BseBI	CCWGG	2 cut(s)	254, 473
BseGI	GGATG	2 cut(s)	426, 481
BseLI	CCNNNNNNNGG	1 cut(s)	343
BseMI	GCAATG	1 cut(s)	455
BseMII	CTCAG	1 cut(s)	150
BseNI	ACTGG	1 cut(s)	65
BseSI	GKGCMC	2 cut(s)	51, 350
BshFI	GGCC	5 cut(s)	5, 129, 195, 348, 383
BshNI	GGYRCC	2 cut(s)	22, 46
BshTI	ACCGGT	1 cut(s)	43
BsiHKCI	CYCGRG	1 cut(s)	343
BsiSI	CCGG	2 cut(s)	44, 130
BslI	CCNNNNNNNGG	1 cut(s)	343
BsnI	GGCC	5 cut(s)	5, 129, 195, 348, 383
BsoBI	CYCGRG	1 cut(s)	343
Bsp120I	GGGCCC	1 cut(s)	346
Bsp1286I	GDGCHC	2 cut(s)	51, 350
Bsp143I	GATC	1 cut(s)	296
BspACI	CCGC	1 cut(s)	464
BspANI	GGCC	5 cut(s)	5, 129, 195, 348, 383
BspCNI	CTCAG	1 cut(s)	151
BspLI	GGNNCC	3 cut(s)	24, 48, 348
BspMAI	CTGCAG	1 cut(s)	40
BspPI	GGATC	1 cut(s)	304
BspT107I	GGYRCC	2 cut(s)	22, 46
BsrDI	GCAATG	1 cut(s)	455
BsrFI	RCCGGY	2 cut(s)	43, 129
BsrI	ACTGG	1 cut(s)	65
BssAI	RCCGGY	2 cut(s)	43, 129
BssMI	GATC	1 cut(s)	296
BssNI	GRCGYC	1 cut(s)	23
Bst2UI	CCWGG	2 cut(s)	254, 473
Bst4CI	ACNGT	1 cut(s)	439
BstACI	GRCGYC	1 cut(s)	23
BstC8I	GCNNGC	3 cut(s)	131, 462, 543
BstDEI	CTNAG	2 cut(s)	159, 416
BstF5I	GGATG	2 cut(s)	426, 481
BstH2I	RGCGCY	1 cut(s)	26
BstHHI	GCGC	1 cut(s)	25
BstKTI	GATC	1 cut(s)	299
BstMBI	GATC	1 cut(s)	296
BstMWI	GCNNNNNNNGC	1 cut(s)	551
BstNI	CCWGG	2 cut(s)	254, 473
BstSCI	CCNGG	2 cut(s)	252, 471
BstSFI	CTRYAG	1 cut(s)	36
BstSLI	GKGCMC	2 cut(s)	51, 350
BstX2I	RGATCY	1 cut(s)	296
BstYI	RGATCY	1 cut(s)	296
BsuRI	GGCC	5 cut(s)	5, 129, 195, 348, 383
BtsCI	GGATG	2 cut(s)	426, 481
BtsIMutI	CAGTG	1 cut(s)	138
Cac8I	GCNNGC	3 cut(s)	131, 462, 543
CfoI	GCGC	1 cut(s)	25
Cfr10I	RCCGGY	2 cut(s)	43, 129
Cfr13I	GGNCC	4 cut(s)	193, 275, 346, 347
CsiI	ACCWGGT	1 cut(s)	252
Csp6I	GTAC	3 cut(s)	41, 242, 467
CspAI	ACCGGT	1 cut(s)	43
CspCI	CAANNNNNGTGG	2 cut(s)	400, 435
CviAII	CATG	2 cut(s)	385, 546
CviQI	GTAC	3 cut(s)	41, 242, 467
DdeI	CTNAG	2 cut(s)	159, 416
DinI	GGCGCC	1 cut(s)	24
DpnI	GATC	1 cut(s)	298
DpnII	GATC	1 cut(s)	296
EaeI	YGGCCR	1 cut(s)	381
Eco24I	GRGCYC	1 cut(s)	350
Eco32I	GATATC	1 cut(s)	145
Eco47I	GGWCC	1 cut(s)	275
Eco88I	CYCGRG	1 cut(s)	343
EcoO109I	RGGNCCY	1 cut(s)	193
EcoRII	CCWGG	2 cut(s)	252, 471
EcoRV	GATATC	1 cut(s)	145
EcoT38I	GRGCYC	1 cut(s)	350
EgeI	GGCGCC	1 cut(s)	24
EheI	GGCGCC	1 cut(s)	24
FaeI	CATG	2 cut(s)	388, 549
FaiI	YATR	6 cut(s)	101, 116, 386, 500, 547, 556
FatI	CATG	2 cut(s)	384, 545
FokI	GGATG	2 cut(s)	413, 488
FriOI	GRGCYC	1 cut(s)	350
FspBI	CTAG	2 cut(s)	239, 291
GlaI	GCGC	1 cut(s)	24
GsuI	CTGGAG	1 cut(s)	69
HaeII	RGCGCY	1 cut(s)	26
HaeIII	GGCC	5 cut(s)	5, 129, 195, 348, 383
HapII	CCGG	2 cut(s)	44, 130
HhaI	GCGC	1 cut(s)	25
Hin1I	GRCGYC	1 cut(s)	23
Hin1II	CATG	2 cut(s)	388, 549
Hin6I	GCGC	1 cut(s)	23
HinP1I	GCGC	1 cut(s)	23
HinfI	GANTC	1 cut(s)	80
HpaII	CCGG	2 cut(s)	44, 130
HphI	GGTGA	1 cut(s)	70
Hpy166II	GTNNAC	1 cut(s)	244
Hpy188I	TCNGA	5 cut(s)	73, 160, 174, 453, 535
Hpy188III	TCNNGA	2 cut(s)	86, 284
Hpy8I	GTNNAC	1 cut(s)	244
HpyAV	CCTTC	3 cut(s)	329, 441, 513
HpyCH4III	ACNGT	1 cut(s)	439
HpyCH4V	TGCA	3 cut(s)	38, 264, 541
HpyF10VI	GCNNNNNNNGC	1 cut(s)	551
HpyF3I	CTNAG	2 cut(s)	159, 416
Hsp92I	GRCGYC	1 cut(s)	23
Hsp92II	CATG	2 cut(s)	388, 549
HspAI	GCGC	1 cut(s)	23
KasI	GGCGCC	1 cut(s)	22
KroI	GCCGGC	1 cut(s)	129
KroNI	GCCGGC	1 cut(s)	131
Kzo9I	GATC	1 cut(s)	296
LweI	GCATC	2 cut(s)	277, 435
MabI	ACCWGGT	1 cut(s)	252
MaeI	CTAG	2 cut(s)	239, 291
MalI	GATC	1 cut(s)	298
MboI	GATC	1 cut(s)	296
MboII	GAAGA	1 cut(s)	89
MfeI	CAATTG	1 cut(s)	219
MflI	RGATCY	1 cut(s)	296
MhlI	GDGCHC	2 cut(s)	51, 350
MlsI	TGGCCA	1 cut(s)	383
MluCI	AATT	8 cut(s)	15, 168, 175, 219, 227, 351, 396, 481
MluNI	TGGCCA	1 cut(s)	383
Mly113I	GGCGCC	1 cut(s)	23
MmeI	TCCRAC	1 cut(s)	421
MnlI	CCTC	7 cut(s)	16, 36, 206, 287, 369, 521, 544
Mox20I	TGGCCA	1 cut(s)	383
MroNI	GCCGGC	1 cut(s)	129
MscI	TGGCCA	1 cut(s)	383
MseI	TTAA	4 cut(s)	96, 248, 395, 488
Msp20I	TGGCCA	1 cut(s)	383
MspI	CCGG	2 cut(s)	44, 130
MspR9I	CCNGG	2 cut(s)	254, 473
MunI	CAATTG	1 cut(s)	219
MvaI	CCWGG	2 cut(s)	254, 473
MwoI	GCNNNNNNNGC	1 cut(s)	551
NaeI	GCCGGC	1 cut(s)	131
NarI	GGCGCC	1 cut(s)	23
NdeII	GATC	1 cut(s)	296
NgoMIV	GCCGGC	1 cut(s)	129
NlaIII	CATG	2 cut(s)	388, 549
NlaIV	GGNNCC	3 cut(s)	24, 48, 348
PdiI	GCCGGC	1 cut(s)	131
PfeI	GAWTC	1 cut(s)	80
PinAI	ACCGGT	1 cut(s)	43
PluTI	GGCGCC	1 cut(s)	26
Psp6I	CCWGG	2 cut(s)	252, 471
PspGI	CCWGG	2 cut(s)	252, 471
PspN4I	GGNNCC	3 cut(s)	24, 48, 348
PspOMI	GGGCCC	1 cut(s)	346
PspPI	GGNCC	4 cut(s)	193, 275, 346, 347
PstI	CTGCAG	1 cut(s)	40
PsuI	RGATCY	1 cut(s)	296
RsaI	GTAC	3 cut(s)	42, 243, 468
RsaNI	GTAC	3 cut(s)	41, 242, 467
SaqAI	TTAA	4 cut(s)	96, 248, 395, 488
Sau3AI	GATC	1 cut(s)	296
Sau96I	GGNCC	4 cut(s)	193, 275, 346, 347
ScrFI	CCNGG	2 cut(s)	254, 473
SduI	GDGCHC	2 cut(s)	51, 350
SexAI	ACCWGGT	1 cut(s)	252
SfaNI	GCATC	2 cut(s)	277, 435
SfcI	CTRYAG	1 cut(s)	36
SfoI	GGCGCC	1 cut(s)	24
SinI	GGWCC	1 cut(s)	275
SpeI	ACTAGT	1 cut(s)	238
Sse9I	AATT	8 cut(s)	15, 168, 175, 219, 227, 351, 396, 481
SsiI	CCGC	1 cut(s)	464
SspDI	GGCGCC	1 cut(s)	22
SspMI	CTAG	2 cut(s)	239, 291
StyD4I	CCNGG	2 cut(s)	252, 471
TaaI	ACNGT	1 cut(s)	439
TaqI	TCGA	4 cut(s)	147, 211, 361, 506
TasI	AATT	8 cut(s)	15, 168, 175, 219, 227, 351, 396, 481
TatI	WGTACW	1 cut(s)	241
TfiI	GAWTC	1 cut(s)	80
Tru1I	TTAA	4 cut(s)	96, 248, 395, 488
Tru9I	TTAA	4 cut(s)	96, 248, 395, 488
TscAI	CASTG	1 cut(s)	145
TspDTI	ATGAA	3 cut(s)	90, 311, 474
TspRI	CASTG	1 cut(s)	145
VpaK11BI	GGWCC	1 cut(s)	275
XapI	RAATTY	4 cut(s)	15, 168, 175, 481
XspI	CTAG	2 cut(s)	239, 291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.