Rh2AG359700

Leucine-rich repeat receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0016681
Physical Location & Seq
Forward (+)
53308937 .. 53312327
3391 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG359700.1

Sequence Viewer

Length: 279 bp
ATGGCAGAGAGATCACAAAGATTAAGCTTAGGGTGCTCAAGTCATTTTGGGAACAATCAGCTCTCGGGCCCAATTCCACCTCGACTTTTCAGCTCAACGATGGCCATGATACATTTAATTTTTGACAGAAACATTCTAAGTGGTAGCATCCCTTCAACTGTTGGACTTGTTCAGACATTGCTGGCGGTACGCCTGGATGGAAATTCATTAAGTGGGCGTGTGCCTTCGAGCCTCAACAACCTTACTAATGTGTCTGAACTGCAAGCATGGGAGGCATAA

Protein Analysis

92

Amino Acids

9.88

Weight (kDa)

8.05

Isoelectric Point (pI)

42.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016681)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G74200 AT1G74200 AT1G74200
malus_domestica MD10G1178000.v1.1
rosa_chinensis RchiOBHm_Chr2g0137671
rosa_laevigata RLG00000009540 RLG00000023880
rosa_roxburghii Rroxscaffold_4G00287120
rosa_samantha Rh2AG359700 Rh2AG462200 Rh4DG211200 Rh4DG239300 Rh7AG276800
rosa_wichuraiana Rw4G018920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 185
AcoI YGGCCR 1 cut(s) 102
AcsI RAATTY 1 cut(s) 202
AfaI GTAC 1 cut(s) 189
AgsI TTSAA 1 cut(s) 156
AjnI CCWGG 1 cut(s) 192
AluBI AGCT 3 cut(s) 27, 61, 93
AluI AGCT 3 cut(s) 27, 61, 93
Alw21I GWGCWC 1 cut(s) 38
Ama87I CYCGRG 1 cut(s) 64
AoxI GGCC 2 cut(s) 67, 102
ApaI GGGCCC 1 cut(s) 71
ApoI RAATTY 1 cut(s) 202
AspS9I GGNCC 2 cut(s) 67, 68
AvaI CYCGRG 1 cut(s) 64
BaeGI GKGCMC 1 cut(s) 71
BalI TGGCCA 1 cut(s) 104
BanII GRGCYC 1 cut(s) 71
BarI GAAGNNNNNNTAC 2 cut(s) 136, 168
Bbv12I GWGCWC 1 cut(s) 38
BccI CCATC 2 cut(s) 94, 191
BciT130I CCWGG 1 cut(s) 194
Bme1390I CCNGG 1 cut(s) 194
BmeT110I CYCGRG 1 cut(s) 64
BmgT120I GGNCC 2 cut(s) 67, 68
BmiI GGNNCC 1 cut(s) 69
BmrFI CCNGG 1 cut(s) 194
BmsI GCATC 1 cut(s) 156
Bpu10I CCTNAGC 1 cut(s) 28
BpuEI CTTGAG 1 cut(s) 22
Bse3DI GCAATG 1 cut(s) 176
BseBI CCWGG 1 cut(s) 194
BseGI GGATG 2 cut(s) 147, 202
BseMI GCAATG 1 cut(s) 176
BseSI GKGCMC 1 cut(s) 71
BshFI GGCC 2 cut(s) 69, 104
BsiHKAI GWGCWC 1 cut(s) 38
BsiHKCI CYCGRG 1 cut(s) 64
BsnI GGCC 2 cut(s) 69, 104
BsoBI CYCGRG 1 cut(s) 64
Bsp120I GGGCCC 1 cut(s) 67
Bsp1286I GDGCHC 2 cut(s) 38, 71
Bsp143I GATC 1 cut(s) 11
BspACI CCGC 1 cut(s) 185
BspANI GGCC 2 cut(s) 69, 104
BspLI GGNNCC 1 cut(s) 69
BsrDI GCAATG 1 cut(s) 176
BssMI GATC 1 cut(s) 11
Bst2UI CCWGG 1 cut(s) 194
Bst4CI ACNGT 1 cut(s) 160
BstC8I GCNNGC 2 cut(s) 183, 264
BstDEI CTNAG 2 cut(s) 28, 137
BstF5I GGATG 2 cut(s) 147, 202
BstKTI GATC 1 cut(s) 14
BstMBI GATC 1 cut(s) 11
BstMWI GCNNNNNNNGC 2 cut(s) 33, 272
BstNI CCWGG 1 cut(s) 194
BstSCI CCNGG 1 cut(s) 192
BstSLI GKGCMC 1 cut(s) 71
BsuRI GGCC 2 cut(s) 69, 104
BtsCI GGATG 2 cut(s) 147, 202
Cac8I GCNNGC 2 cut(s) 183, 264
Cfr13I GGNCC 2 cut(s) 67, 68
Csp6I GTAC 1 cut(s) 188
CviAII CATG 2 cut(s) 106, 267
CviJI RGCY 6 cut(s) 27, 61, 69, 93, 104, 231
CviKI_1 RGCY 6 cut(s) 27, 61, 69, 93, 104, 231
CviQI GTAC 1 cut(s) 188
DdeI CTNAG 2 cut(s) 28, 137
DpnI GATC 1 cut(s) 13
DpnII GATC 1 cut(s) 11
EaeI YGGCCR 1 cut(s) 102
Eco24I GRGCYC 1 cut(s) 71
Eco88I CYCGRG 1 cut(s) 64
EcoRII CCWGG 1 cut(s) 192
EcoT38I GRGCYC 1 cut(s) 71
FaeI CATG 2 cut(s) 109, 270
FaiI YATR 3 cut(s) 107, 268, 277
FatI CATG 2 cut(s) 105, 266
FokI GGATG 2 cut(s) 134, 209
FriOI GRGCYC 1 cut(s) 71
HaeIII GGCC 2 cut(s) 69, 104
Hin1II CATG 2 cut(s) 109, 270
HindIII AAGCTT 1 cut(s) 25
Hpy188I TCNGA 2 cut(s) 174, 256
HpyAV CCTTC 2 cut(s) 162, 234
HpyCH4III ACNGT 1 cut(s) 160
HpyCH4V TGCA 1 cut(s) 262
HpyF10VI GCNNNNNNNGC 2 cut(s) 33, 272
HpyF3I CTNAG 2 cut(s) 28, 137
Hsp92II CATG 2 cut(s) 109, 270
Kzo9I GATC 1 cut(s) 11
LpnPI CCDG 3 cut(s) 167, 179, 206
LweI GCATC 1 cut(s) 156
MalI GATC 1 cut(s) 13
MboI GATC 1 cut(s) 11
MhlI GDGCHC 2 cut(s) 38, 71
MlsI TGGCCA 1 cut(s) 104
MluCI AATT 3 cut(s) 72, 117, 202
MluNI TGGCCA 1 cut(s) 104
MmeI TCCRAC 1 cut(s) 142
MnlI CCTC 3 cut(s) 90, 242, 265
Mox20I TGGCCA 1 cut(s) 104
MscI TGGCCA 1 cut(s) 104
MseI TTAA 3 cut(s) 23, 116, 209
Msp20I TGGCCA 1 cut(s) 104
MspR9I CCNGG 1 cut(s) 194
MvaI CCWGG 1 cut(s) 194
MwoI GCNNNNNNNGC 2 cut(s) 33, 272
NdeII GATC 1 cut(s) 11
NlaIII CATG 2 cut(s) 109, 270
NlaIV GGNNCC 1 cut(s) 69
Psp6I CCWGG 1 cut(s) 192
PspGI CCWGG 1 cut(s) 192
PspN4I GGNNCC 1 cut(s) 69
PspOMI GGGCCC 1 cut(s) 67
PspPI GGNCC 2 cut(s) 67, 68
RsaI GTAC 1 cut(s) 189
RsaNI GTAC 1 cut(s) 188
SaqAI TTAA 3 cut(s) 23, 116, 209
Sau3AI GATC 1 cut(s) 11
Sau96I GGNCC 2 cut(s) 67, 68
ScrFI CCNGG 1 cut(s) 194
SduI GDGCHC 2 cut(s) 38, 71
SetI ASST 5 cut(s) 29, 63, 82, 95, 243
SfaNI GCATC 1 cut(s) 156
SmlI CTYRAG 1 cut(s) 37
SmoI CTYRAG 1 cut(s) 37
Sse9I AATT 3 cut(s) 72, 117, 202
SsiI CCGC 1 cut(s) 185
StyD4I CCNGG 1 cut(s) 192
TaaI ACNGT 1 cut(s) 160
TaqI TCGA 2 cut(s) 82, 227
TasI AATT 3 cut(s) 72, 117, 202
Tru1I TTAA 3 cut(s) 23, 116, 209
Tru9I TTAA 3 cut(s) 23, 116, 209
TspDTI ATGAA 1 cut(s) 195
XapI RAATTY 1 cut(s) 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.