Rh2AG462200

Leucine-rich repeat receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0016681
Physical Location & Seq
Forward (+)
67981695 .. 67991195
9501 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG462200.1

Sequence Viewer

Length: 558 bp
ATGATAAAGAATATCATTGCACAAAGAGCAGCTACTGAAACCAAGAAAACTGAAGCCATAGAACAAGCTAGGCTATTGATTGCTGAAGCTGAGAAGGCTGCCATGGCTCTTGAGGCTTCTGCAACTAAGAGTATTCTTATGGATGAGTGGAATATAAAACCTCCTAGTTGGGTGAGTGCTGATCCTTGTGGCGGCTGGGAAGGTATTAAGTGCACCAATTCACGCATCACTGCCTTAAACCTGGTTGGTTGCAGTTTCTTTGGTCCTATTCCAGATGCTATAGGATCTCTAACGAAGCTGTCTTACCTTCATTTTGGGAACAATCAGCTCTCGGGCCCAATTCCACCTCGACTTTTCAGCTCAACGATGGCCATGATACATTTAATTTTTGACAGAAACAATCTAAGTGGTAGCATCCCTTCAACTGTTGGACTTGTTCAGACATTGCTGGCGGTACGCCTGGATGGAAATTCATTAAGTGGGCGTGTGCCTTCGAGCCTCAACAACCTTACTAATGTGTCTGAACTGCAAGCATGGGAGGCAAAACCAAATGAATAA

Protein Analysis

185

Amino Acids

19.91

Weight (kDa)

6.74

Isoelectric Point (pI)

29.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016681)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G74200 AT1G74200 AT1G74200
malus_domestica MD10G1178000.v1.1
rosa_chinensis RchiOBHm_Chr2g0137671
rosa_laevigata RLG00000009540 RLG00000023880
rosa_roxburghii Rroxscaffold_4G00287120
rosa_samantha Rh2AG359700 Rh2AG462200 Rh4DG211200 Rh4DG239300 Rh7AG276800
rosa_wichuraiana Rw4G018920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 192, 452
AclWI GGATC 2 cut(s) 176, 292
AcoI YGGCCR 1 cut(s) 369
AcsI RAATTY 1 cut(s) 469
AcuI CTGAAG 2 cut(s) 72, 105
AfaI GTAC 1 cut(s) 456
AfiI CCNNNNNNNGG 1 cut(s) 191
AgsI TTSAA 1 cut(s) 423
AjnI CCWGG 2 cut(s) 240, 459
AluBI AGCT 6 cut(s) 32, 68, 89, 298, 328, 360
AluI AGCT 6 cut(s) 32, 68, 89, 298, 328, 360
Alw21I GWGCWC 1 cut(s) 215
Alw44I GTGCAC 1 cut(s) 211
AlwI GGATC 2 cut(s) 176, 292
AlwNI CAGNNNCTG 1 cut(s) 35
Ama87I CYCGRG 1 cut(s) 331
AoxI GGCC 2 cut(s) 334, 369
ApaI GGGCCC 1 cut(s) 338
ApaLI GTGCAC 1 cut(s) 211
ApeKI GCWGC 2 cut(s) 29, 98
ApoI RAATTY 1 cut(s) 469
AspS9I GGNCC 3 cut(s) 263, 334, 335
AsuHPI GGTGA 1 cut(s) 184
AvaI CYCGRG 1 cut(s) 331
AvaII GGWCC 1 cut(s) 263
BaeGI GKGCMC 2 cut(s) 215, 338
BalI TGGCCA 1 cut(s) 371
BanII GRGCYC 1 cut(s) 338
BarI GAAGNNNNNNTAC 4 cut(s) 287, 319, 403, 435
Bbv12I GWGCWC 1 cut(s) 215
BbvI GCAGC 2 cut(s) 41, 85
BccI CCATC 2 cut(s) 361, 458
BciT130I CCWGG 2 cut(s) 242, 461
BfaI CTAG 2 cut(s) 69, 165
BfmI CTRYAG 1 cut(s) 279
BisI GCNGC 3 cut(s) 30, 99, 193
BlsI GCNGC 3 cut(s) 31, 100, 194
Bme1390I CCNGG 2 cut(s) 242, 461
Bme18I GGWCC 1 cut(s) 263
BmeT110I CYCGRG 1 cut(s) 331
BmgT120I GGNCC 3 cut(s) 263, 334, 335
BmiI GGNNCC 1 cut(s) 336
BmrFI CCNGG 2 cut(s) 242, 461
BmsI GCATC 3 cut(s) 234, 265, 423
BpuEI CTTGAG 1 cut(s) 131
BsaJI CCNNGG 1 cut(s) 102
Bsc4I CCNNNNNNNGG 1 cut(s) 191
Bse3DI GCAATG 2 cut(s) 15, 443
BseBI CCWGG 2 cut(s) 242, 461
BseDI CCNNGG 1 cut(s) 102
BseGI GGATG 3 cut(s) 148, 414, 469
BseLI CCNNNNNNNGG 1 cut(s) 191
BseMI GCAATG 2 cut(s) 15, 443
BseMII CTCAG 1 cut(s) 81
BseSI GKGCMC 2 cut(s) 215, 338
BseXI GCAGC 2 cut(s) 41, 85
BseYI CCCAGC 1 cut(s) 195
BshFI GGCC 2 cut(s) 336, 371
BsiHKAI GWGCWC 1 cut(s) 215
BsiHKCI CYCGRG 1 cut(s) 331
BslI CCNNNNNNNGG 1 cut(s) 191
BsnI GGCC 2 cut(s) 336, 371
BsoBI CYCGRG 1 cut(s) 331
Bsp120I GGGCCC 1 cut(s) 334
Bsp1286I GDGCHC 2 cut(s) 215, 338
Bsp143I GATC 2 cut(s) 181, 284
Bsp19I CCATGG 1 cut(s) 102
BspACI CCGC 2 cut(s) 192, 452
BspANI GGCC 2 cut(s) 336, 371
BspCNI CTCAG 1 cut(s) 82
BspLI GGNNCC 1 cut(s) 336
BspPI GGATC 2 cut(s) 176, 292
BsrDI GCAATG 2 cut(s) 15, 443
BssECI CCNNGG 1 cut(s) 102
BssMI GATC 2 cut(s) 181, 284
BssT1I CCWWGG 1 cut(s) 102
Bst2UI CCWGG 2 cut(s) 242, 461
Bst4CI ACNGT 1 cut(s) 427
BstC8I GCNNGC 2 cut(s) 450, 531
BstDEI CTNAG 3 cut(s) 90, 126, 404
BstDSI CCRYGG 1 cut(s) 102
BstF5I GGATG 3 cut(s) 148, 414, 469
BstKTI GATC 2 cut(s) 184, 287
BstMBI GATC 2 cut(s) 181, 284
BstMWI GCNNNNNNNGC 5 cut(s) 26, 95, 104, 113, 539
BstNI CCWGG 2 cut(s) 242, 461
BstSCI CCNGG 2 cut(s) 240, 459
BstSFI CTRYAG 1 cut(s) 279
BstSLI GKGCMC 2 cut(s) 215, 338
BstV1I GCAGC 2 cut(s) 41, 85
BstX2I RGATCY 1 cut(s) 284
BstYI RGATCY 1 cut(s) 284
BsuRI GGCC 2 cut(s) 336, 371
BtgI CCRYGG 1 cut(s) 102
BtsCI GGATG 3 cut(s) 148, 414, 469
BtsI GCAGTG 1 cut(s) 228
BtsIMutI CAGTG 1 cut(s) 228
Cac8I GCNNGC 2 cut(s) 450, 531
CaiI CAGNNNCTG 1 cut(s) 35
Cfr13I GGNCC 3 cut(s) 263, 334, 335
CsiI ACCWGGT 1 cut(s) 240
Csp6I GTAC 1 cut(s) 455
CspCI CAANNNNNGTGG 2 cut(s) 388, 423
CviAII CATG 3 cut(s) 103, 373, 534
CviQI GTAC 1 cut(s) 455
DdeI CTNAG 3 cut(s) 90, 126, 404
DpnI GATC 2 cut(s) 183, 286
DpnII GATC 2 cut(s) 181, 284
EaeI YGGCCR 1 cut(s) 369
Eco130I CCWWGG 1 cut(s) 102
Eco24I GRGCYC 1 cut(s) 338
Eco47I GGWCC 1 cut(s) 263
Eco57I CTGAAG 2 cut(s) 72, 105
Eco88I CYCGRG 1 cut(s) 331
EcoRII CCWGG 2 cut(s) 240, 459
EcoT14I CCWWGG 1 cut(s) 102
EcoT38I GRGCYC 1 cut(s) 338
ErhI CCWWGG 1 cut(s) 102
FaeI CATG 3 cut(s) 106, 376, 537
FaiI YATR 7 cut(s) 59, 104, 140, 155, 281, 374, 535
FatI CATG 3 cut(s) 102, 372, 533
Fnu4HI GCNGC 3 cut(s) 30, 99, 193
FokI GGATG 3 cut(s) 155, 401, 476
FriOI GRGCYC 1 cut(s) 338
Fsp4HI GCNGC 3 cut(s) 30, 99, 193
FspBI CTAG 2 cut(s) 69, 165
GluI GCNGC 3 cut(s) 30, 99, 193
GsaI CCCAGC 1 cut(s) 199
HaeIII GGCC 2 cut(s) 336, 371
Hin1II CATG 3 cut(s) 106, 376, 537
HphI GGTGA 1 cut(s) 184
Hpy166II GTNNAC 1 cut(s) 213
Hpy188I TCNGA 2 cut(s) 441, 523
Hpy188III TCNNGA 2 cut(s) 110, 272
Hpy8I GTNNAC 1 cut(s) 213
HpyAV CCTTC 5 cut(s) 88, 194, 317, 429, 501
HpyCH4III ACNGT 1 cut(s) 427
HpyCH4V TGCA 5 cut(s) 20, 122, 213, 252, 529
HpyF10VI GCNNNNNNNGC 5 cut(s) 26, 95, 104, 113, 539
HpyF3I CTNAG 3 cut(s) 90, 126, 404
Hsp92II CATG 3 cut(s) 106, 376, 537
Kzo9I GATC 2 cut(s) 181, 284
LpnPI CCDG 7 cut(s) 181, 227, 254, 285, 434, 446, 473
Lsp1109I GCAGC 2 cut(s) 41, 85
LweI GCATC 3 cut(s) 234, 265, 423
MabI ACCWGGT 1 cut(s) 240
MaeI CTAG 2 cut(s) 69, 165
MalI GATC 2 cut(s) 183, 286
MboI GATC 2 cut(s) 181, 284
MflI RGATCY 1 cut(s) 284
MhlI GDGCHC 2 cut(s) 215, 338
MlsI TGGCCA 1 cut(s) 371
MluCI AATT 4 cut(s) 217, 339, 384, 469
MluNI TGGCCA 1 cut(s) 371
MmeI TCCRAC 1 cut(s) 409
MnlI CCTC 5 cut(s) 106, 171, 357, 509, 532
Mox20I TGGCCA 1 cut(s) 371
MscI TGGCCA 1 cut(s) 371
MseI TTAA 4 cut(s) 207, 236, 383, 476
Msp20I TGGCCA 1 cut(s) 371
MspR9I CCNGG 2 cut(s) 242, 461
MvaI CCWGG 2 cut(s) 242, 461
MwoI GCNNNNNNNGC 5 cut(s) 26, 95, 104, 113, 539
NcoI CCATGG 1 cut(s) 102
NdeII GATC 2 cut(s) 181, 284
NlaIII CATG 3 cut(s) 106, 376, 537
NlaIV GGNNCC 1 cut(s) 336
PkrI GCNGC 3 cut(s) 31, 100, 194
Psp6I CCWGG 2 cut(s) 240, 459
PspFI CCCAGC 1 cut(s) 195
PspGI CCWGG 2 cut(s) 240, 459
PspN4I GGNNCC 1 cut(s) 336
PspOMI GGGCCC 1 cut(s) 334
PspPI GGNCC 3 cut(s) 263, 334, 335
PstNI CAGNNNCTG 1 cut(s) 35
PsuI RGATCY 1 cut(s) 284
RsaI GTAC 1 cut(s) 456
RsaNI GTAC 1 cut(s) 455
SaqAI TTAA 4 cut(s) 207, 236, 383, 476
SatI GCNGC 3 cut(s) 30, 99, 193
Sau3AI GATC 2 cut(s) 181, 284
Sau96I GGNCC 3 cut(s) 263, 334, 335
ScrFI CCNGG 2 cut(s) 242, 461
SduI GDGCHC 2 cut(s) 215, 338
SexAI ACCWGGT 1 cut(s) 240
SfaNI GCATC 3 cut(s) 234, 265, 423
SfcI CTRYAG 1 cut(s) 279
SinI GGWCC 1 cut(s) 263
SmlI CTYRAG 1 cut(s) 110
SmoI CTYRAG 1 cut(s) 110
Sse9I AATT 4 cut(s) 217, 339, 384, 469
SsiI CCGC 2 cut(s) 192, 452
SspMI CTAG 2 cut(s) 69, 165
StyD4I CCNGG 2 cut(s) 240, 459
StyI CCWWGG 1 cut(s) 102
TaaI ACNGT 1 cut(s) 427
TaqI TCGA 2 cut(s) 349, 494
TasI AATT 4 cut(s) 217, 339, 384, 469
TauI GCSGC 1 cut(s) 195
Tru1I TTAA 4 cut(s) 207, 236, 383, 476
Tru9I TTAA 4 cut(s) 207, 236, 383, 476
TscAI CASTG 1 cut(s) 235
TseI GCWGC 2 cut(s) 29, 98
TspDTI ATGAA 2 cut(s) 299, 462
TspRI CASTG 1 cut(s) 235
VneI GTGCAC 1 cut(s) 211
VpaK11BI GGWCC 1 cut(s) 263
XapI RAATTY 1 cut(s) 469
XspI CTAG 2 cut(s) 69, 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.