Rroxscaffold_4G00287120

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0016681
Physical Location & Seq
Reverse (-)
8177126 .. 8178407
1282 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00287120.1

Sequence Viewer

Length: 1059 bp
ATGGAACCATATCACCATATATACATTGGCAACCTCTCCCTTTTCAGGGACTTCAGCCTTCACAACAACAGCTTCTCTGGCAAGATTCCGCAACAAGTTGGACATTTATTCCGACTGCAATATCTCCGTCTCAATACCAACATGTTGGAGGGGGCAATTCCAGTCAACCTGACCTTGTGTGCGGAACTGAGCGTCTTAAATTTTGGAGGAAACCGCCTTCCCGGCAAAATTCCTTCAGAGATTAGGTCATTGAGGAAGCTTATGCATCTCAATCTAGAGAAAAACAATCTGACGGGACCCATCCCACCTTCCTTGGGGAATCTTTCATCACTCACTGTACTTGCCTTGGCATCCAACAATTTGGGGGGCAACGTACCAGATGTGCTAGGCCGATTGAGAAGCTTATCAACTTTTGCAGTTGGTCCCAATAATCTCTCTGCCAATGAATTTGAAGGCAGTATTCCACCTGGTATAGGCCTAAACATGCCTAATCTCCAATTACTGACGCTTGGTGCAAATGAATTCTATGGACAAATCCCAACTTCACTTTCCAATTCTTCTCAACTTCATTGGCTTGATTTTGTGCAAAATAATTTTGTTGGCCAACTTCCTGCAAGCCAATTTCTCAACCCAACTGACTCAACTCTACCTTGGGGGCAATCAAATAGCGGGAACGATTCCGAAACATTAGAAAATTTGAACAATTTATTACTCCTGGCCCGGGAAGAAAACTTGTTCACAGGTACCATTCTAGCTTCTTTTGGGATGTTACAAAAGCTACAAGCATTAAATTTAGATTCGAATAGATTATTAGGCCGGATCCCATCTTCCTTAGGAAACCCCATCCAATTGTCTGAACAATACTTAGATGCTAATGAATTAGAAGGAAACATTCCTCCAAATATTGGTAACTGCAAAAGTTTGCAGCAGATGGATATATTAGACAATAAGCTTGGTGGAGATATACCACAACAACTAATTGGTCTTTCCGGTCGCCTTATTCTATCTCAACTTATCGCAAAACTCGCTAACTGGCATTCTGCCTGTGGAAATGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

352

Amino Acids

38.26

Weight (kDa)

5.8

Isoelectric Point (pI)

41.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 31 - 204 1.1e-11 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016681)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G74200 AT1G74200 AT1G74200
malus_domestica MD10G1178000.v1.1
rosa_chinensis RchiOBHm_Chr2g0137671
rosa_laevigata RLG00000009540 RLG00000023880
rosa_roxburghii Rroxscaffold_4G00287120
rosa_samantha Rh2AG359700 Rh2AG462200 Rh4DG211200 Rh4DG239300 Rh7AG276800
rosa_wichuraiana Rw4G018920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 743
AccB1I GGYRCC 1 cut(s) 743
AccB7I CCANNNNNTGG 1 cut(s) 905
AciI CCGC 4 cut(s) 89, 182, 214, 669
AclWI GGATC 2 cut(s) 814, 827
AcoI YGGCCR 1 cut(s) 601
AcsI RAATTY 6 cut(s) 199, 228, 446, 521, 694, 790
AcuI CTGAAG 2 cut(s) 37, 219
AfaI GTAC 3 cut(s) 339, 375, 745
AfiI CCNNNNNNNGG 6 cut(s) 45, 46, 314, 473, 721, 905
AflIII ACRYGT 1 cut(s) 141
AgsI TTSAA 2 cut(s) 452, 700
AjnI CCWGG 2 cut(s) 466, 714
AjuI GAANNNNNNNTTGG 2 cut(s) 532, 564
AluBI AGCT 6 cut(s) 72, 259, 402, 755, 778, 952
AluI AGCT 6 cut(s) 72, 259, 402, 755, 778, 952
Alw26I GTCTC 1 cut(s) 134
AlwI GGATC 2 cut(s) 814, 827
Ama87I CYCGRG 1 cut(s) 720
AoxI GGCC 5 cut(s) 388, 475, 601, 717, 814
ApeKI GCWGC 1 cut(s) 925
ApoI RAATTY 6 cut(s) 199, 228, 446, 521, 694, 790
Asp718I GGTACC 1 cut(s) 743
AspS9I GGNCC 3 cut(s) 296, 422, 718
AsuC2I CCSGG 3 cut(s) 222, 721, 722
AsuHPI GGTGA 1 cut(s) 5
AsuII TTCGAA 1 cut(s) 800
AvaI CYCGRG 1 cut(s) 720
AvaII GGWCC 2 cut(s) 296, 422
AxyI CCTNAGG 1 cut(s) 832
BalI TGGCCA 1 cut(s) 603
BamHI GGATCC 1 cut(s) 819
BanI GGYRCC 1 cut(s) 743
BbvI GCAGC 1 cut(s) 937
BccI CCATC 4 cut(s) 308, 832, 851, 925
BciT130I CCWGG 2 cut(s) 468, 716
BcnI CCSGG 3 cut(s) 222, 721, 722
BcoDI GTCTC 1 cut(s) 134
BfaI CTAG 3 cut(s) 275, 386, 752
BglI GCCNNNNNGGC 1 cut(s) 222
BisI GCNGC 1 cut(s) 926
BlsI GCNGC 1 cut(s) 927
Bme1390I CCNGG 5 cut(s) 222, 468, 716, 721, 722
Bme18I GGWCC 2 cut(s) 296, 422
BmeT110I CYCGRG 1 cut(s) 720
BmgT120I GGNCC 3 cut(s) 296, 422, 718
BmiI GGNNCC 6 cut(s) 6, 297, 298, 424, 745, 821
BmrFI CCNGG 5 cut(s) 222, 468, 716, 721, 722
BmsI GCATC 3 cut(s) 274, 359, 859
Bpu14I TTCGAA 1 cut(s) 800
BpuMI CCSGG 3 cut(s) 222, 721, 722
BsaJI CCNNGG 4 cut(s) 312, 345, 650, 720
BsaWI WCCGGW 1 cut(s) 989
Bsc4I CCNNNNNNNGG 6 cut(s) 45, 46, 314, 473, 721, 905
Bse1I ACTGG 2 cut(s) 161, 1037
Bse21I CCTNAGG 1 cut(s) 832
BseBI CCWGG 2 cut(s) 468, 716
BseDI CCNNGG 4 cut(s) 312, 345, 650, 720
BseGI GGATG 4 cut(s) 300, 350, 771, 843
BseLI CCNNNNNNNGG 6 cut(s) 45, 46, 314, 473, 721, 905
BseMII CTCAG 1 cut(s) 179
BseNI ACTGG 2 cut(s) 161, 1037
BseXI GCAGC 1 cut(s) 937
Bsh1285I CGRYCG 1 cut(s) 994
BshFI GGCC 5 cut(s) 390, 477, 603, 719, 816
BshNI GGYRCC 1 cut(s) 743
BsiEI CGRYCG 1 cut(s) 994
BsiHKCI CYCGRG 1 cut(s) 720
BsiSI CCGG 4 cut(s) 222, 721, 817, 990
BslFI GGGAC 3 cut(s) 62, 309, 408
BslI CCNNNNNNNGG 6 cut(s) 45, 46, 314, 473, 721, 905
BsmAI GTCTC 1 cut(s) 134
BsmBI CGTCTC 1 cut(s) 134
BsmFI GGGAC 3 cut(s) 62, 309, 408
BsmI GAATGC 1 cut(s) 1036
BsnI GGCC 5 cut(s) 390, 477, 603, 719, 816
BsoBI CYCGRG 1 cut(s) 720
Bsp119I TTCGAA 1 cut(s) 800
Bsp143I GATC 1 cut(s) 819
BspACI CCGC 4 cut(s) 89, 182, 214, 669
BspANI GGCC 5 cut(s) 390, 477, 603, 719, 816
BspCNI CTCAG 1 cut(s) 180
BspLI GGNNCC 6 cut(s) 6, 297, 298, 424, 745, 821
BspPI GGATC 2 cut(s) 814, 827
BspT104I TTCGAA 1 cut(s) 800
BspT107I GGYRCC 1 cut(s) 743
BsrI ACTGG 2 cut(s) 161, 1037
BssECI CCNNGG 4 cut(s) 312, 345, 650, 720
BssMI GATC 1 cut(s) 819
BssT1I CCWWGG 3 cut(s) 312, 345, 650
Bst2UI CCWGG 2 cut(s) 468, 716
Bst4CI ACNGT 1 cut(s) 337
BstBI TTCGAA 1 cut(s) 800
BstC8I GCNNGC 1 cut(s) 616
BstDEI CTNAG 3 cut(s) 188, 832, 865
BstENI CCTNNNNNAGG 1 cut(s) 471
BstF5I GGATG 4 cut(s) 300, 350, 771, 843
BstKTI GATC 1 cut(s) 822
BstMAI GTCTC 1 cut(s) 134
BstMBI GATC 1 cut(s) 819
BstMCI CGRYCG 1 cut(s) 994
BstMWI GCNNNNNNNGC 3 cut(s) 78, 222, 1025
BstNI CCWGG 2 cut(s) 468, 716
BstNSI RCATGY 2 cut(s) 145, 487
BstSCI CCNGG 5 cut(s) 220, 466, 714, 719, 720
BstV1I GCAGC 1 cut(s) 937
BstX2I RGATCY 1 cut(s) 819
BstXI CCANNNNNNTGG 2 cut(s) 145, 361
BstYI RGATCY 1 cut(s) 819
Bsu36I CCTNAGG 1 cut(s) 832
BsuRI GGCC 5 cut(s) 390, 477, 603, 719, 816
BtsCI GGATG 4 cut(s) 300, 350, 771, 843
BtsIMutI CAGTG 1 cut(s) 333
Cac8I GCNNGC 1 cut(s) 616
Cfr13I GGNCC 3 cut(s) 296, 422, 718
Cfr9I CCCGGG 1 cut(s) 720
CseI GACGC 2 cut(s) 181, 514
CsiI ACCWGGT 1 cut(s) 466
Csp6I GTAC 3 cut(s) 338, 374, 744
CspCI CAANNNNNGTGG 2 cut(s) 294, 329
CviAII CATG 2 cut(s) 142, 484
CviQI GTAC 3 cut(s) 338, 374, 744
DdeI CTNAG 3 cut(s) 188, 832, 865
DpnI GATC 1 cut(s) 821
DpnII GATC 1 cut(s) 819
EaeI YGGCCR 1 cut(s) 601
Eco130I CCWWGG 3 cut(s) 312, 345, 650
Eco147I AGGCCT 1 cut(s) 477
Eco47I GGWCC 2 cut(s) 296, 422
Eco57I CTGAAG 2 cut(s) 37, 219
Eco81I CCTNAGG 1 cut(s) 832
Eco88I CYCGRG 1 cut(s) 720
EcoNI CCTNNNNNAGG 1 cut(s) 471
EcoO109I RGGNCCY 1 cut(s) 296
EcoRI GAATTC 1 cut(s) 521
EcoRII CCWGG 2 cut(s) 466, 714
EcoT14I CCWWGG 3 cut(s) 312, 345, 650
EcoT22I ATGCAT 1 cut(s) 267
ErhI CCWWGG 3 cut(s) 312, 345, 650
Esp3I CGTCTC 1 cut(s) 134
FaeI CATG 2 cut(s) 145, 487
FaqI GGGAC 3 cut(s) 62, 309, 408
FatI CATG 2 cut(s) 141, 483
FauI CCCGC 1 cut(s) 662
Fnu4HI GCNGC 1 cut(s) 926
FokI GGATG 4 cut(s) 287, 337, 778, 830
Fsp4HI GCNGC 1 cut(s) 926
FspBI CTAG 3 cut(s) 275, 386, 752
GluI GCNGC 1 cut(s) 926
HaeIII GGCC 5 cut(s) 390, 477, 603, 719, 816
HapII CCGG 4 cut(s) 222, 721, 817, 990
HgaI GACGC 2 cut(s) 181, 514
Hin1II CATG 2 cut(s) 145, 487
HincII GTYRAC 1 cut(s) 166
HindII GTYRAC 1 cut(s) 166
HindIII AAGCTT 3 cut(s) 257, 400, 950
HinfI GANTC 5 cut(s) 85, 319, 638, 677, 797
HpaII CCGG 4 cut(s) 222, 721, 817, 990
HphI GGTGA 1 cut(s) 5
Hpy166II GTNNAC 2 cut(s) 166, 738
Hpy188I TCNGA 5 cut(s) 113, 238, 291, 682, 856
Hpy188III TCNNGA 1 cut(s) 275
Hpy8I GTNNAC 2 cut(s) 166, 738
HpyAV CCTTC 6 cut(s) 68, 227, 243, 318, 446, 878
HpyCH4III ACNGT 1 cut(s) 337
HpyCH4IV ACGT 1 cut(s) 372
HpyCH4V TGCA 8 cut(s) 118, 265, 416, 515, 586, 614, 915, 925
HpyF10VI GCNNNNNNNGC 3 cut(s) 78, 222, 1025
HpyF3I CTNAG 3 cut(s) 188, 832, 865
HpySE526I ACGT 1 cut(s) 372
Hsp92II CATG 2 cut(s) 145, 487
KflI GGGWCCC 1 cut(s) 296
KpnI GGTACC 1 cut(s) 747
Kzo9I GATC 1 cut(s) 819
Lsp1109I GCAGC 1 cut(s) 937
LweI GCATC 3 cut(s) 274, 359, 859
MabI ACCWGGT 1 cut(s) 466
MaeI CTAG 3 cut(s) 275, 386, 752
MaeII ACGT 1 cut(s) 372
MaeIII GTNAC 2 cut(s) 768, 908
MalI GATC 1 cut(s) 821
MboI GATC 1 cut(s) 819
MboII GAAGA 3 cut(s) 549, 737, 819
MfeI CAATTG 1 cut(s) 848
MflI RGATCY 1 cut(s) 819
MlsI TGGCCA 1 cut(s) 603
MluNI TGGCCA 1 cut(s) 603
MlyI GAGTC 1 cut(s) 632
MmeI TCCRAC 4 cut(s) 79, 126, 136, 378
MnlI CCTC 5 cut(s) 44, 142, 200, 246, 906
Mox20I TGGCCA 1 cut(s) 603
Mph1103I ATGCAT 1 cut(s) 267
MscI TGGCCA 1 cut(s) 603
MseI TTAA 2 cut(s) 197, 788
Msp20I TGGCCA 1 cut(s) 603
MspI CCGG 4 cut(s) 222, 721, 817, 990
MspR9I CCNGG 5 cut(s) 222, 468, 716, 721, 722
MunI CAATTG 1 cut(s) 848
Mva1269I GAATGC 1 cut(s) 1036
MvaI CCWGG 2 cut(s) 468, 716
MwoI GCNNNNNNNGC 3 cut(s) 78, 222, 1025
NciI CCSGG 3 cut(s) 222, 721, 722
NdeII GATC 1 cut(s) 819
NlaIII CATG 2 cut(s) 145, 487
NlaIV GGNNCC 6 cut(s) 6, 297, 298, 424, 745, 821
NsiI ATGCAT 1 cut(s) 267
NspI RCATGY 2 cut(s) 145, 487
NspV TTCGAA 1 cut(s) 800
PceI AGGCCT 1 cut(s) 477
PciI ACATGT 1 cut(s) 141
PctI GAATGC 1 cut(s) 1036
PfeI GAWTC 4 cut(s) 85, 319, 677, 797
PflMI CCANNNNNTGG 1 cut(s) 905
PkrI GCNGC 1 cut(s) 927
PleI GAGTC 1 cut(s) 632
PpsI GAGTC 1 cut(s) 632
PpuMI RGGWCCY 1 cut(s) 296
PscI ACATGT 1 cut(s) 141
Psp5II RGGWCCY 1 cut(s) 296
Psp6I CCWGG 2 cut(s) 466, 714
PspGI CCWGG 2 cut(s) 466, 714
PspN4I GGNNCC 6 cut(s) 6, 297, 298, 424, 745, 821
PspPI GGNCC 3 cut(s) 296, 422, 718
PspPPI RGGWCCY 1 cut(s) 296
PsuI RGATCY 1 cut(s) 819
RsaI GTAC 3 cut(s) 339, 375, 745
RsaNI GTAC 3 cut(s) 338, 374, 744
SaqAI TTAA 2 cut(s) 197, 788
SatI GCNGC 1 cut(s) 926
Sau3AI GATC 1 cut(s) 819
Sau96I GGNCC 3 cut(s) 296, 422, 718
SchI GAGTC 1 cut(s) 632
ScrFI CCNGG 5 cut(s) 222, 468, 716, 721, 722
SexAI ACCWGGT 1 cut(s) 466
SfaNI GCATC 3 cut(s) 274, 359, 859
SfuI TTCGAA 1 cut(s) 800
SinI GGWCC 2 cut(s) 296, 422
SmaI CCCGGG 1 cut(s) 722
SseBI AGGCCT 1 cut(s) 477
SsiI CCGC 4 cut(s) 89, 182, 214, 669
SspI AATATT 1 cut(s) 904
SspMI CTAG 3 cut(s) 275, 386, 752
StuI AGGCCT 1 cut(s) 477
StyD4I CCNGG 5 cut(s) 220, 466, 714, 719, 720
StyI CCWWGG 3 cut(s) 312, 345, 650
TaaI ACNGT 1 cut(s) 337
TaiI ACGT 1 cut(s) 375
TaqI TCGA 1 cut(s) 800
TatI WGTACW 1 cut(s) 337
TfiI GAWTC 4 cut(s) 85, 319, 677, 797
Tru1I TTAA 2 cut(s) 197, 788
Tru9I TTAA 2 cut(s) 197, 788
TscAI CASTG 1 cut(s) 340
TseI GCWGC 1 cut(s) 925
TspDTI ATGAA 5 cut(s) 315, 459, 534, 557, 891
TspGWI ACGGA 1 cut(s) 116
TspMI CCCGGG 1 cut(s) 720
TspRI CASTG 1 cut(s) 340
Van91I CCANNNNNTGG 1 cut(s) 905
VpaK11BI GGWCC 2 cut(s) 296, 422
XagI CCTNNNNNAGG 1 cut(s) 471
XapI RAATTY 6 cut(s) 199, 228, 446, 521, 694, 790
XbaI TCTAGA 1 cut(s) 274
XceI RCATGY 2 cut(s) 145, 487
XcmI CCANNNNNNNNNTGG 1 cut(s) 23
XmaI CCCGGG 1 cut(s) 720
XspI CTAG 3 cut(s) 275, 386, 752
Zsp2I ATGCAT 1 cut(s) 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.