Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0016681

Physical Location & Seq

Genomic Coordinates Reverse (-)

44656128 .. 44658427

Gene Structure 2300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG239300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGGTTTGAAAGGCCGGCTACCCACTGATATCGAGTTGTTATCTGAGCTACAAATTCTGAATGTATCTTTCAACAAGGACCTGACAGGACAACTTCGAGCTTCAATTGGAAAATTGACGAAACTAGTACACTTAAACCTGGTTGGTTGTTTGCCCAATTCCACCTCTACTTTTCAGCTCAACGATGGCCATGATACATTTGTTGTACGATGCATTGTGGCTGATCCATCAATAGTGTGCAAAGATTTGGGGGTAAATTCAGCTTGCGTTGAGTCAGTGCTTGATTTGTTTTGGATTATTCGCTTTTGGTCCGAGGAGTTTTCTCATCAGCAAATGTATTATTCAGAGATGGTTAAAACATCATCACAACTTAGGACGAAAACAGCAAAGCTGAAGAAGCGAAACAGAATAAGACAGATAAGATCTACAACCGATACAAAGATTCATCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

150

Amino Acids

17.05

Weight (kDa)

9.33

Isoelectric Point (pI)

41.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016681)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74200 AT1G74200 AT1G74200
malus_domestica	MD10G1178000.v1.1
rosa_chinensis	RchiOBHm_Chr2g0137671
rosa_laevigata	RLG00000009540 RLG00000023880
rosa_roxburghii	Rroxscaffold_4G00287120
rosa_samantha	Rh2AG359700 Rh2AG462200 Rh4DG211200 Rh4DG239300 Rh7AG276800
rosa_wichuraiana	Rw4G018920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	218
AcoI	YGGCCR	1 cut(s)	187
AcsI	RAATTY	2 cut(s)	54, 256
AcuI	CTGAAG	1 cut(s)	413
AfaI	GTAC	2 cut(s)	129, 207
AgsI	TTSAA	3 cut(s)	10, 73, 105
AhlI	ACTAGT	1 cut(s)	124
AjnI	CCWGG	1 cut(s)	138
AluBI	AGCT	5 cut(s)	49, 101, 178, 263, 391
AluI	AGCT	5 cut(s)	49, 101, 178, 263, 391
AlwI	GGATC	1 cut(s)	218
AoxI	GGCC	2 cut(s)	13, 187
ApoI	RAATTY	2 cut(s)	54, 256
AspS9I	GGNCC	2 cut(s)	79, 309
AvaII	GGWCC	2 cut(s)	79, 309
BaeI	ACNNNNGTAYC	2 cut(s)	186, 219
BalI	TGGCCA	1 cut(s)	189
BccI	CCATC	3 cut(s)	179, 235, 343
BciT130I	CCWGG	1 cut(s)	140
BcuI	ACTAGT	1 cut(s)	124
BfaI	CTAG	1 cut(s)	125
BglII	AGATCT	1 cut(s)	422
Bme1390I	CCNGG	1 cut(s)	140
Bme18I	GGWCC	2 cut(s)	79, 309
BmgT120I	GGNCC	2 cut(s)	79, 309
BmrFI	CCNGG	1 cut(s)	140
BmsI	GCATC	1 cut(s)	200
BsaJI	CCNNGG	1 cut(s)	312
Bse118I	RCCGGY	1 cut(s)	15
BseBI	CCWGG	1 cut(s)	140
BseDI	CCNNGG	1 cut(s)	312
BseMII	CTCAG	1 cut(s)	36
BseRI	GAGGAG	1 cut(s)	329
BshFI	GGCC	2 cut(s)	15, 189
BsiSI	CCGG	1 cut(s)	16
BsnI	GGCC	2 cut(s)	15, 189
Bsp143I	GATC	2 cut(s)	223, 422
BspANI	GGCC	2 cut(s)	15, 189
BspCNI	CTCAG	1 cut(s)	37
BspPI	GGATC	1 cut(s)	218
BsrFI	RCCGGY	1 cut(s)	15
BssAI	RCCGGY	1 cut(s)	15
BssECI	CCNNGG	1 cut(s)	312
BssMI	GATC	2 cut(s)	223, 422
Bst2UI	CCWGG	1 cut(s)	140
BstC8I	GCNNGC	2 cut(s)	17, 265
BstDEI	CTNAG	2 cut(s)	45, 371
BstKTI	GATC	2 cut(s)	226, 425
BstMBI	GATC	2 cut(s)	223, 422
BstMWI	GCNNNNNNNGC	1 cut(s)	397
BstNI	CCWGG	1 cut(s)	140
BstSCI	CCNGG	1 cut(s)	138
BstX2I	RGATCY	1 cut(s)	422
BstYI	RGATCY	1 cut(s)	422
BsuRI	GGCC	2 cut(s)	15, 189
BtsIMutI	CAGTG	2 cut(s)	24, 282
Cac8I	GCNNGC	2 cut(s)	17, 265
Cfr10I	RCCGGY	1 cut(s)	15
Cfr13I	GGNCC	2 cut(s)	79, 309
CsiI	ACCWGGT	1 cut(s)	138
Csp6I	GTAC	2 cut(s)	128, 206
CviAII	CATG	1 cut(s)	191
CviJI	RGCY	9 cut(s)	15, 19, 49, 101, 178, 189, 221, 263, 391
CviKI_1	RGCY	9 cut(s)	15, 19, 49, 101, 178, 189, 221, 263, 391
CviQI	GTAC	2 cut(s)	128, 206
DdeI	CTNAG	2 cut(s)	45, 371
DpnI	GATC	2 cut(s)	225, 424
DpnII	GATC	2 cut(s)	223, 422
EaeI	YGGCCR	1 cut(s)	187
Eco32I	GATATC	1 cut(s)	31
Eco47I	GGWCC	2 cut(s)	79, 309
Eco57I	CTGAAG	1 cut(s)	413
EcoO109I	RGGNCCY	1 cut(s)	79
EcoRII	CCWGG	1 cut(s)	138
EcoRV	GATATC	1 cut(s)	31
EcoT22I	ATGCAT	1 cut(s)	215
FaeI	CATG	1 cut(s)	194
FaiI	YATR	1 cut(s)	192
FatI	CATG	1 cut(s)	190
FspBI	CTAG	1 cut(s)	125
HaeIII	GGCC	2 cut(s)	15, 189
HapII	CCGG	1 cut(s)	16
Hin1II	CATG	1 cut(s)	194
HinfI	GANTC	2 cut(s)	272, 442
HpaII	CCGG	1 cut(s)	16
Hpy166II	GTNNAC	1 cut(s)	130
Hpy188I	TCNGA	4 cut(s)	46, 60, 313, 346
Hpy8I	GTNNAC	1 cut(s)	130
HpyCH4V	TGCA	2 cut(s)	213, 240
HpyF10VI	GCNNNNNNNGC	1 cut(s)	397
HpyF3I	CTNAG	2 cut(s)	45, 371
Hsp92II	CATG	1 cut(s)	194
KroI	GCCGGC	1 cut(s)	15
KroNI	GCCGGC	1 cut(s)	17
Kzo9I	GATC	2 cut(s)	223, 422
LpnPI	CCDG	5 cut(s)	29, 72, 95, 125, 152
LweI	GCATC	1 cut(s)	200
MabI	ACCWGGT	1 cut(s)	138
MaeI	CTAG	1 cut(s)	125
MalI	GATC	2 cut(s)	225, 424
MboI	GATC	2 cut(s)	223, 422
MboII	GAAGA	1 cut(s)	406
MfeI	CAATTG	1 cut(s)	105
MflI	RGATCY	1 cut(s)	422
MlsI	TGGCCA	1 cut(s)	189
MluCI	AATT	5 cut(s)	54, 105, 113, 157, 256
MluNI	TGGCCA	1 cut(s)	189
MlyI	GAGTC	1 cut(s)	281
MnlI	CCTC	2 cut(s)	175, 307
Mox20I	TGGCCA	1 cut(s)	189
Mph1103I	ATGCAT	1 cut(s)	215
MroNI	GCCGGC	1 cut(s)	15
MscI	TGGCCA	1 cut(s)	189
MseI	TTAA	2 cut(s)	134, 354
Msp20I	TGGCCA	1 cut(s)	189
MspI	CCGG	1 cut(s)	16
MspR9I	CCNGG	1 cut(s)	140
MunI	CAATTG	1 cut(s)	105
MvaI	CCWGG	1 cut(s)	140
MwoI	GCNNNNNNNGC	1 cut(s)	397
NaeI	GCCGGC	1 cut(s)	17
NdeII	GATC	2 cut(s)	223, 422
NgoMIV	GCCGGC	1 cut(s)	15
NlaIII	CATG	1 cut(s)	194
NsiI	ATGCAT	1 cut(s)	215
PdiI	GCCGGC	1 cut(s)	17
PfeI	GAWTC	1 cut(s)	442
PleI	GAGTC	1 cut(s)	280
PpsI	GAGTC	1 cut(s)	280
PpuMI	RGGWCCY	1 cut(s)	79
Psp5II	RGGWCCY	1 cut(s)	79
Psp6I	CCWGG	1 cut(s)	138
PspGI	CCWGG	1 cut(s)	138
PspPI	GGNCC	2 cut(s)	79, 309
PspPPI	RGGWCCY	1 cut(s)	79
PsuI	RGATCY	1 cut(s)	422
RsaI	GTAC	2 cut(s)	129, 207
RsaNI	GTAC	2 cut(s)	128, 206
SaqAI	TTAA	2 cut(s)	134, 354
Sau3AI	GATC	2 cut(s)	223, 422
Sau96I	GGNCC	2 cut(s)	79, 309
SchI	GAGTC	1 cut(s)	281
ScrFI	CCNGG	1 cut(s)	140
SetI	ASST	8 cut(s)	51, 84, 103, 141, 167, 180, 265, 393
SexAI	ACCWGGT	1 cut(s)	138
SfaNI	GCATC	1 cut(s)	200
SinI	GGWCC	2 cut(s)	79, 309
SpeI	ACTAGT	1 cut(s)	124
Sse9I	AATT	5 cut(s)	54, 105, 113, 157, 256
SspMI	CTAG	1 cut(s)	125
StyD4I	CCNGG	1 cut(s)	138
TaqI	TCGA	2 cut(s)	33, 97
TasI	AATT	5 cut(s)	54, 105, 113, 157, 256
TatI	WGTACW	1 cut(s)	127
TfiI	GAWTC	1 cut(s)	442
Tru1I	TTAA	2 cut(s)	134, 354
Tru9I	TTAA	2 cut(s)	134, 354
TscAI	CASTG	2 cut(s)	31, 282
TspDTI	ATGAA	1 cut(s)	434
TspRI	CASTG	2 cut(s)	31, 282
VpaK11BI	GGWCC	2 cut(s)	79, 309
XapI	RAATTY	2 cut(s)	54, 256
XspI	CTAG	1 cut(s)	125
Zsp2I	ATGCAT	1 cut(s)	215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.