RLG00000023880

Leucine-rich repeat receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0016681
Physical Location & Seq
Reverse (-)
29492919 .. 29496127
3209 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023880

Sequence Viewer

Length: 858 bp
ATGTGGAAGTTTCTGCAGTCCTTCCTTGTAGGGATACCTTGTTACAGCATCCAAGAATCAGATCTTGTGATCTTCTTTCCAAAATGTCTTCTTCAGTTCCCCTCGACTCCGGATGGTTATATGCAGATTCTTATGGATGAGTGCCATATAAAACCTCCTAGTTGGGTGAGTGCCGATCCTTGTGACGGCTGGGAAGGTATTAAGTGCACCAATTCACACATCACTGCCTTAGTGTTGGCAAACATGGGTTTGAAAGGCCGGCTACCCACTGATATCGAGTTATTATCTGAGCTACAAATTCTGAATTTATCTTTCAACAAGGGCCTGACAGGACAACTTCGAGCTTCAATTGGAAAATTGACGAAACTAGTACACTTAAACCTAGTTGGTTGCAGTTTCTTTGGTCCTATTCCAGATTCTAACGAAGCTGTCTTACCTGCAAGATTATGGCAATCTTCATTGGTTTTCTACTGCAGATCTCTGAAAAACAATAGTTTCAGTGGGCCAATTCCGCCTTCCATTGGTAATCTGGCCAATCTTACTTTTATAGACCTATCTGACAACAAGCTTCAGGGATCCATCCCAGTTTCTAATGGGACTACACTTGGTCTTGATAAGTTACTTAAGGCGAGACACTTTCATTTTGGGAACAATCAGCTCTCGGGCCCAATTCCACCTCGACTTTTCAACTCAACGATGGCCATGATACATTTACGCCTGGATGGAAATTCATTAAGTGGGCGTGTGCCTTCGAGCCTCAACAACCTTACTAATGTGTCTGAACTGCACTTGTCCAATAATATGCTGACTGGCCCTATGCCCAACCTTACTGGCATGAATTCCCTCAACTATGTGTAA

Protein Analysis

286

Amino Acids

31.25

Weight (kDa)

8.16

Isoelectric Point (pI)

41.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016681)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G74200 AT1G74200 AT1G74200
malus_domestica MD10G1178000.v1.1
rosa_chinensis RchiOBHm_Chr2g0137671
rosa_laevigata RLG00000009540 RLG00000023880
rosa_roxburghii Rroxscaffold_4G00287120
rosa_samantha Rh2AG359700 Rh2AG462200 Rh4DG211200 Rh4DG239300 Rh7AG276800
rosa_wichuraiana Rw4G018920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 445
AccIII TCCGGA 1 cut(s) 109
AciI CCGC 1 cut(s) 512
AclWI GGATC 3 cut(s) 170, 570, 583
AcoI YGGCCR 2 cut(s) 531, 699
AcsI RAATTY 4 cut(s) 297, 304, 727, 838
AcuI CTGAAG 2 cut(s) 77, 554
AfaI GTAC 1 cut(s) 372
AfiI CCNNNNNNNGG 2 cut(s) 185, 521
AflII CTTAAG 1 cut(s) 623
AgsI TTSAA 4 cut(s) 253, 316, 348, 688
AhlI ACTAGT 1 cut(s) 367
AjnI CCWGG 1 cut(s) 717
AjuI GAANNNNNNNTTGG 2 cut(s) 499, 531
AluBI AGCT 5 cut(s) 292, 344, 428, 568, 658
AluI AGCT 5 cut(s) 292, 344, 428, 568, 658
Alw21I GWGCWC 1 cut(s) 209
Alw26I GTCTC 1 cut(s) 625
Alw44I GTGCAC 1 cut(s) 205
AlwI GGATC 3 cut(s) 170, 570, 583
Ama87I CYCGRG 1 cut(s) 661
Aor13HI TCCGGA 1 cut(s) 109
AoxI GGCC 7 cut(s) 256, 322, 503, 531, 664, 699, 811
ApaI GGGCCC 1 cut(s) 668
ApaLI GTGCAC 1 cut(s) 205
ApoI RAATTY 4 cut(s) 297, 304, 727, 838
AspS9I GGNCC 6 cut(s) 322, 404, 503, 664, 665, 812
AsuHPI GGTGA 1 cut(s) 178
AvaI CYCGRG 1 cut(s) 661
AvaII GGWCC 1 cut(s) 404
BaeGI GKGCMC 2 cut(s) 209, 668
BalI TGGCCA 2 cut(s) 533, 701
BamHI GGATCC 1 cut(s) 575
BanII GRGCYC 1 cut(s) 668
BarI GAAGNNNNNNTAC 2 cut(s) 417, 449
BbsI GAAGAC 1 cut(s) 80
Bbv12I GWGCWC 1 cut(s) 209
BccI CCATC 4 cut(s) 107, 587, 691, 716
BceAI ACGGC 1 cut(s) 202
BciT130I CCWGG 1 cut(s) 719
BciVI GTATCC 1 cut(s) 27
BcoDI GTCTC 1 cut(s) 625
BcuI ACTAGT 1 cut(s) 367
BfaI CTAG 3 cut(s) 159, 368, 383
BfmI CTRYAG 2 cut(s) 14, 472
BfrI CTTAAG 1 cut(s) 623
BfuAI ACCTGC 1 cut(s) 445
BfuI GTATCC 1 cut(s) 27
BglII AGATCT 2 cut(s) 61, 476
Bme1390I CCNGG 1 cut(s) 719
Bme18I GGWCC 1 cut(s) 404
BmeT110I CYCGRG 1 cut(s) 661
BmgT120I GGNCC 6 cut(s) 322, 404, 503, 664, 665, 812
BmiI GGNNCC 2 cut(s) 577, 666
BmrFI CCNGG 1 cut(s) 719
BmrI ACTGGG 1 cut(s) 578
BmsI GCATC 1 cut(s) 57
BmuI ACTGGG 1 cut(s) 578
BpiI GAAGAC 1 cut(s) 80
BsaWI WCCGGW 1 cut(s) 109
Bsc4I CCNNNNNNNGG 2 cut(s) 185, 521
Bse118I RCCGGY 1 cut(s) 258
Bse1I ACTGG 3 cut(s) 584, 814, 835
BseAI TCCGGA 1 cut(s) 109
BseBI CCWGG 1 cut(s) 719
BseGI GGATG 5 cut(s) 48, 118, 142, 579, 727
BseLI CCNNNNNNNGG 2 cut(s) 185, 521
BseMII CTCAG 1 cut(s) 279
BseNI ACTGG 3 cut(s) 584, 814, 835
BseSI GKGCMC 2 cut(s) 209, 668
BseYI CCCAGC 1 cut(s) 189
BsgI GTGCAG 1 cut(s) 770
BshFI GGCC 7 cut(s) 258, 324, 505, 533, 666, 701, 813
BsiHKAI GWGCWC 1 cut(s) 209
BsiHKCI CYCGRG 1 cut(s) 661
BsiSI CCGG 2 cut(s) 110, 259
BslFI GGGAC 1 cut(s) 610
BslI CCNNNNNNNGG 2 cut(s) 185, 521
BsmAI GTCTC 1 cut(s) 625
BsmFI GGGAC 1 cut(s) 610
BsnI GGCC 7 cut(s) 258, 324, 505, 533, 666, 701, 813
BsoBI CYCGRG 1 cut(s) 661
Bsp120I GGGCCC 1 cut(s) 664
Bsp1286I GDGCHC 2 cut(s) 209, 668
Bsp13I TCCGGA 1 cut(s) 109
Bsp143I GATC 5 cut(s) 61, 69, 175, 476, 575
BspACI CCGC 1 cut(s) 512
BspANI GGCC 7 cut(s) 258, 324, 505, 533, 666, 701, 813
BspCNI CTCAG 1 cut(s) 280
BspEI TCCGGA 1 cut(s) 109
BspLI GGNNCC 2 cut(s) 577, 666
BspMAI CTGCAG 2 cut(s) 18, 476
BspMI ACCTGC 1 cut(s) 445
BspPI GGATC 3 cut(s) 170, 570, 583
BspTI CTTAAG 1 cut(s) 623
BsrFI RCCGGY 1 cut(s) 258
BsrI ACTGG 3 cut(s) 584, 814, 835
BssAI RCCGGY 1 cut(s) 258
BssMI GATC 5 cut(s) 61, 69, 175, 476, 575
Bst2UI CCWGG 1 cut(s) 719
BstAFI CTTAAG 1 cut(s) 623
BstC8I GCNNGC 1 cut(s) 260
BstDEI CTNAG 2 cut(s) 229, 288
BstF5I GGATG 5 cut(s) 48, 118, 142, 579, 727
BstKTI GATC 5 cut(s) 64, 72, 178, 479, 578
BstMAI GTCTC 1 cut(s) 625
BstMBI GATC 5 cut(s) 61, 69, 175, 476, 575
BstMWI GCNNNNNNNGC 1 cut(s) 511
BstNI CCWGG 1 cut(s) 719
BstSCI CCNGG 1 cut(s) 717
BstSFI CTRYAG 2 cut(s) 14, 472
BstSLI GKGCMC 2 cut(s) 209, 668
BstV2I GAAGAC 1 cut(s) 80
BstX2I RGATCY 3 cut(s) 61, 476, 575
BstYI RGATCY 3 cut(s) 61, 476, 575
BsuI GTATCC 1 cut(s) 27
BsuRI GGCC 7 cut(s) 258, 324, 505, 533, 666, 701, 813
BtsCI GGATG 5 cut(s) 48, 118, 142, 579, 727
BtsI GCAGTG 1 cut(s) 222
BtsIMutI CAGTG 3 cut(s) 222, 267, 505
BveI ACCTGC 1 cut(s) 445
Cac8I GCNNGC 1 cut(s) 260
Cfr10I RCCGGY 1 cut(s) 258
Cfr13I GGNCC 6 cut(s) 322, 404, 503, 664, 665, 812
Csp6I GTAC 1 cut(s) 371
CviAII CATG 3 cut(s) 244, 703, 835
CviQI GTAC 1 cut(s) 371
DdeI CTNAG 2 cut(s) 229, 288
DpnI GATC 5 cut(s) 63, 71, 177, 478, 577
DpnII GATC 5 cut(s) 61, 69, 175, 476, 575
EaeI YGGCCR 2 cut(s) 531, 699
EciI GGCGGA 1 cut(s) 501
Eco24I GRGCYC 1 cut(s) 668
Eco32I GATATC 1 cut(s) 274
Eco47I GGWCC 1 cut(s) 404
Eco57I CTGAAG 2 cut(s) 77, 554
Eco88I CYCGRG 1 cut(s) 661
EcoO109I RGGNCCY 1 cut(s) 322
EcoRI GAATTC 1 cut(s) 838
EcoRII CCWGG 1 cut(s) 717
EcoRV GATATC 1 cut(s) 274
EcoT38I GRGCYC 1 cut(s) 668
FaeI CATG 3 cut(s) 247, 706, 838
FaqI GGGAC 1 cut(s) 610
FatI CATG 3 cut(s) 243, 702, 834
FokI GGATG 5 cut(s) 35, 125, 149, 566, 734
FriOI GRGCYC 1 cut(s) 668
FspBI CTAG 3 cut(s) 159, 368, 383
GsaI CCCAGC 1 cut(s) 193
HaeIII GGCC 7 cut(s) 258, 324, 505, 533, 666, 701, 813
HapII CCGG 2 cut(s) 110, 259
Hin1II CATG 3 cut(s) 247, 706, 838
HindIII AAGCTT 1 cut(s) 566
HinfI GANTC 4 cut(s) 56, 106, 127, 416
HpaII CCGG 2 cut(s) 110, 259
HphI GGTGA 1 cut(s) 178
Hpy166II GTNNAC 2 cut(s) 207, 373
Hpy188I TCNGA 6 cut(s) 61, 289, 303, 483, 559, 781
Hpy188III TCNNGA 3 cut(s) 110, 413, 611
Hpy8I GTNNAC 2 cut(s) 207, 373
HpyAV CCTTC 4 cut(s) 31, 188, 525, 759
HpyCH4V TGCA 7 cut(s) 16, 124, 207, 393, 440, 474, 787
HpyF10VI GCNNNNNNNGC 1 cut(s) 511
HpyF3I CTNAG 2 cut(s) 229, 288
Hsp92II CATG 3 cut(s) 247, 706, 838
Kpn2I TCCGGA 1 cut(s) 109
KroI GCCGGC 1 cut(s) 258
KroNI GCCGGC 1 cut(s) 260
Kzo9I GATC 5 cut(s) 61, 69, 175, 476, 575
LweI GCATC 1 cut(s) 57
MaeI CTAG 3 cut(s) 159, 368, 383
MaeIII GTNAC 3 cut(s) 41, 182, 618
MalI GATC 5 cut(s) 63, 71, 177, 478, 577
MboI GATC 5 cut(s) 61, 69, 175, 476, 575
MboII GAAGA 4 cut(s) 64, 80, 83, 447
MfeI CAATTG 1 cut(s) 348
MflI RGATCY 3 cut(s) 61, 476, 575
MhlI GDGCHC 2 cut(s) 209, 668
MlsI TGGCCA 2 cut(s) 533, 701
MluCI AATT 9 cut(s) 211, 297, 304, 348, 356, 507, 669, 727, 838
MluNI TGGCCA 2 cut(s) 533, 701
MlyI GAGTC 1 cut(s) 100
MnlI CCTC 5 cut(s) 112, 165, 687, 767, 854
Mox20I TGGCCA 2 cut(s) 533, 701
MroI TCCGGA 1 cut(s) 109
MroNI GCCGGC 1 cut(s) 258
MscI TGGCCA 2 cut(s) 533, 701
MseI TTAA 4 cut(s) 201, 377, 624, 734
Msp20I TGGCCA 2 cut(s) 533, 701
MspCI CTTAAG 1 cut(s) 623
MspI CCGG 2 cut(s) 110, 259
MspR9I CCNGG 1 cut(s) 719
MunI CAATTG 1 cut(s) 348
MvaI CCWGG 1 cut(s) 719
MwoI GCNNNNNNNGC 1 cut(s) 511
NaeI GCCGGC 1 cut(s) 260
NdeII GATC 5 cut(s) 61, 69, 175, 476, 575
NgoMIV GCCGGC 1 cut(s) 258
NlaIII CATG 3 cut(s) 247, 706, 838
NlaIV GGNNCC 2 cut(s) 577, 666
NmuCI GTSAC 1 cut(s) 182
PdiI GCCGGC 1 cut(s) 260
PfeI GAWTC 3 cut(s) 56, 127, 416
PleI GAGTC 1 cut(s) 100
PpsI GAGTC 1 cut(s) 100
Psp6I CCWGG 1 cut(s) 717
PspFI CCCAGC 1 cut(s) 189
PspGI CCWGG 1 cut(s) 717
PspN4I GGNNCC 2 cut(s) 577, 666
PspOMI GGGCCC 1 cut(s) 664
PspPI GGNCC 6 cut(s) 322, 404, 503, 664, 665, 812
PstI CTGCAG 2 cut(s) 18, 476
PsuI RGATCY 3 cut(s) 61, 476, 575
RsaI GTAC 1 cut(s) 372
RsaNI GTAC 1 cut(s) 371
SaqAI TTAA 4 cut(s) 201, 377, 624, 734
Sau3AI GATC 5 cut(s) 61, 69, 175, 476, 575
Sau96I GGNCC 6 cut(s) 322, 404, 503, 664, 665, 812
SchI GAGTC 1 cut(s) 100
ScrFI CCNGG 1 cut(s) 719
SduI GDGCHC 2 cut(s) 209, 668
SfaNI GCATC 1 cut(s) 57
SfcI CTRYAG 2 cut(s) 14, 472
SinI GGWCC 1 cut(s) 404
SmlI CTYRAG 1 cut(s) 623
SmoI CTYRAG 1 cut(s) 623
SpeI ACTAGT 1 cut(s) 367
Sse9I AATT 9 cut(s) 211, 297, 304, 348, 356, 507, 669, 727, 838
SsiI CCGC 1 cut(s) 512
SspMI CTAG 3 cut(s) 159, 368, 383
StyD4I CCNGG 1 cut(s) 717
TaqI TCGA 5 cut(s) 104, 276, 340, 679, 752
TasI AATT 9 cut(s) 211, 297, 304, 348, 356, 507, 669, 727, 838
TatI WGTACW 1 cut(s) 370
TfiI GAWTC 3 cut(s) 56, 127, 416
Tru1I TTAA 4 cut(s) 201, 377, 624, 734
Tru9I TTAA 4 cut(s) 201, 377, 624, 734
TscAI CASTG 3 cut(s) 229, 274, 505
TseFI GTSAC 1 cut(s) 182
Tsp45I GTSAC 1 cut(s) 182
TspDTI ATGAA 4 cut(s) 447, 629, 720, 851
TspRI CASTG 3 cut(s) 229, 274, 505
Vha464I CTTAAG 1 cut(s) 623
VneI GTGCAC 1 cut(s) 205
VpaK11BI GGWCC 1 cut(s) 404
XapI RAATTY 4 cut(s) 297, 304, 727, 838
XcmI CCANNNNNNNNNTGG 1 cut(s) 526
XspI CTAG 3 cut(s) 159, 368, 383
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.