RchiOBHm_Chr2g0137671

Leucine-rich repeat receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0016681
Physical Location & Seq
Forward (+)
55463019 .. 55469820
6802 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ50840

Sequence Viewer

Length: 474 bp
ATGGGTTTGAAAGGCCGGCTACCCACTGATATCGAGTTGTTATCTGAGCTACAAATTCTGAATTTATCTTTCAACAAGGGCCTGACAGGACAACTTCGAGCTTTAATTGGAAAATTGACGAAACTAGTACACTTAAACCTGGTTGGTTGCAGTTTCTTTGGTCCTATTCCAGATGCTATAGGATCTCTAACGAAGCCATCTTACCTATCTCTGAAAAACAATAGTTTCAGTGGGCCAATTCCGCCTTCCATTGGTAATCTGGCCGATCTTACTTTTATAGACCTATCTGACAACAAGCTTCAGGGATCCATCCCAGTCTCTAATGGGACTACACTTGGTCTCGATAAGTTACTTAAGGCGAGACGCTTTCATTTTGGGAACAATCAGCTCTCGGGCCCAATTCCACCTCGACTTTTCAGCTCAACGATGGCCATGATACATTTGTTGTACGACGCATTGTGGCTGATCCATTAG

Protein Analysis

157

Amino Acids

17.03

Weight (kDa)

9.61

Isoelectric Point (pI)

29.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016681)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G74200 AT1G74200 AT1G74200
malus_domestica MD10G1178000.v1.1
rosa_chinensis RchiOBHm_Chr2g0137671
rosa_laevigata RLG00000009540 RLG00000023880
rosa_roxburghii Rroxscaffold_4G00287120
rosa_samantha Rh2AG359700 Rh2AG462200 Rh4DG211200 Rh4DG239300 Rh7AG276800
rosa_wichuraiana Rw4G018920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 242
AclWI GGATC 4 cut(s) 190, 300, 313, 460
AcoI YGGCCR 2 cut(s) 261, 429
AcsI RAATTY 2 cut(s) 54, 61
AcuI CTGAAG 1 cut(s) 284
AfaI GTAC 2 cut(s) 129, 449
AfiI CCNNNNNNNGG 1 cut(s) 251
AflII CTTAAG 1 cut(s) 353
AgsI TTSAA 2 cut(s) 10, 73
AhlI ACTAGT 1 cut(s) 124
AjnI CCWGG 1 cut(s) 138
AjuI GAANNNNNNNTTGG 2 cut(s) 229, 261
AluBI AGCT 5 cut(s) 49, 101, 298, 388, 420
AluI AGCT 5 cut(s) 49, 101, 298, 388, 420
Alw26I GTCTC 3 cut(s) 322, 344, 355
AlwI GGATC 4 cut(s) 190, 300, 313, 460
Ama87I CYCGRG 1 cut(s) 391
AoxI GGCC 6 cut(s) 13, 79, 233, 261, 394, 429
ApaI GGGCCC 1 cut(s) 398
ApoI RAATTY 2 cut(s) 54, 61
AspS9I GGNCC 5 cut(s) 79, 161, 233, 394, 395
AvaI CYCGRG 1 cut(s) 391
AvaII GGWCC 1 cut(s) 161
BaeGI GKGCMC 1 cut(s) 398
BaeI ACNNNNGTAYC 2 cut(s) 428, 461
BalI TGGCCA 1 cut(s) 431
BamHI GGATCC 1 cut(s) 305
BanII GRGCYC 1 cut(s) 398
BarI GAAGNNNNNNTAC 2 cut(s) 185, 217
BccI CCATC 3 cut(s) 205, 317, 421
BciT130I CCWGG 1 cut(s) 140
BcoDI GTCTC 3 cut(s) 322, 344, 355
BcuI ACTAGT 1 cut(s) 124
BfaI CTAG 1 cut(s) 125
BfmI CTRYAG 1 cut(s) 177
BfrI CTTAAG 1 cut(s) 353
Bme1390I CCNGG 1 cut(s) 140
Bme18I GGWCC 1 cut(s) 161
BmeT110I CYCGRG 1 cut(s) 391
BmgT120I GGNCC 5 cut(s) 79, 161, 233, 394, 395
BmiI GGNNCC 2 cut(s) 307, 396
BmrFI CCNGG 1 cut(s) 140
BmrI ACTGGG 1 cut(s) 308
BmsI GCATC 1 cut(s) 163
BmuI ACTGGG 1 cut(s) 308
BsaI GGTCTC 1 cut(s) 344
Bsc4I CCNNNNNNNGG 1 cut(s) 251
Bse118I RCCGGY 1 cut(s) 15
Bse1I ACTGG 1 cut(s) 314
BseBI CCWGG 1 cut(s) 140
BseGI GGATG 1 cut(s) 309
BseLI CCNNNNNNNGG 1 cut(s) 251
BseMII CTCAG 1 cut(s) 36
BseNI ACTGG 1 cut(s) 314
BseSI GKGCMC 1 cut(s) 398
BshFI GGCC 6 cut(s) 15, 81, 235, 263, 396, 431
BsiHKCI CYCGRG 1 cut(s) 391
BsiSI CCGG 1 cut(s) 16
BslFI GGGAC 1 cut(s) 340
BslI CCNNNNNNNGG 1 cut(s) 251
BsmAI GTCTC 3 cut(s) 322, 344, 355
BsmBI CGTCTC 1 cut(s) 355
BsmFI GGGAC 1 cut(s) 340
BsnI GGCC 6 cut(s) 15, 81, 235, 263, 396, 431
Bso31I GGTCTC 1 cut(s) 344
BsoBI CYCGRG 1 cut(s) 391
Bsp120I GGGCCC 1 cut(s) 394
Bsp1286I GDGCHC 1 cut(s) 398
Bsp143I GATC 4 cut(s) 182, 265, 305, 465
BspACI CCGC 1 cut(s) 242
BspANI GGCC 6 cut(s) 15, 81, 235, 263, 396, 431
BspCNI CTCAG 1 cut(s) 37
BspLI GGNNCC 2 cut(s) 307, 396
BspPI GGATC 4 cut(s) 190, 300, 313, 460
BspTI CTTAAG 1 cut(s) 353
BspTNI GGTCTC 1 cut(s) 344
BsrFI RCCGGY 1 cut(s) 15
BsrI ACTGG 1 cut(s) 314
BssAI RCCGGY 1 cut(s) 15
BssMI GATC 4 cut(s) 182, 265, 305, 465
Bst2UI CCWGG 1 cut(s) 140
BstAFI CTTAAG 1 cut(s) 353
BstC8I GCNNGC 1 cut(s) 17
BstDEI CTNAG 1 cut(s) 45
BstF5I GGATG 1 cut(s) 309
BstKTI GATC 4 cut(s) 185, 268, 308, 468
BstMAI GTCTC 3 cut(s) 322, 344, 355
BstMBI GATC 4 cut(s) 182, 265, 305, 465
BstMWI GCNNNNNNNGC 1 cut(s) 241
BstNI CCWGG 1 cut(s) 140
BstSCI CCNGG 1 cut(s) 138
BstSFI CTRYAG 1 cut(s) 177
BstSLI GKGCMC 1 cut(s) 398
BstX2I RGATCY 2 cut(s) 182, 305
BstYI RGATCY 2 cut(s) 182, 305
BsuRI GGCC 6 cut(s) 15, 81, 235, 263, 396, 431
BtsCI GGATG 1 cut(s) 309
BtsIMutI CAGTG 2 cut(s) 24, 235
Cac8I GCNNGC 1 cut(s) 17
Cfr10I RCCGGY 1 cut(s) 15
Cfr13I GGNCC 5 cut(s) 79, 161, 233, 394, 395
CseI GACGC 2 cut(s) 372, 461
CsiI ACCWGGT 1 cut(s) 138
Csp6I GTAC 2 cut(s) 128, 448
CviAII CATG 1 cut(s) 433
CviQI GTAC 2 cut(s) 128, 448
DdeI CTNAG 1 cut(s) 45
DpnI GATC 4 cut(s) 184, 267, 307, 467
DpnII GATC 4 cut(s) 182, 265, 305, 465
EaeI YGGCCR 2 cut(s) 261, 429
EciI GGCGGA 1 cut(s) 231
Eco24I GRGCYC 1 cut(s) 398
Eco31I GGTCTC 1 cut(s) 344
Eco32I GATATC 1 cut(s) 31
Eco47I GGWCC 1 cut(s) 161
Eco57I CTGAAG 1 cut(s) 284
Eco88I CYCGRG 1 cut(s) 391
EcoO109I RGGNCCY 1 cut(s) 79
EcoRII CCWGG 1 cut(s) 138
EcoRV GATATC 1 cut(s) 31
EcoT38I GRGCYC 1 cut(s) 398
Esp3I CGTCTC 1 cut(s) 355
FaeI CATG 1 cut(s) 436
FaiI YATR 3 cut(s) 179, 278, 434
FaqI GGGAC 1 cut(s) 340
FatI CATG 1 cut(s) 432
FokI GGATG 1 cut(s) 296
FriOI GRGCYC 1 cut(s) 398
FspBI CTAG 1 cut(s) 125
HaeIII GGCC 6 cut(s) 15, 81, 235, 263, 396, 431
HapII CCGG 1 cut(s) 16
HgaI GACGC 2 cut(s) 372, 461
Hin1II CATG 1 cut(s) 436
HindIII AAGCTT 1 cut(s) 296
HpaII CCGG 1 cut(s) 16
Hpy166II GTNNAC 1 cut(s) 130
Hpy188I TCNGA 4 cut(s) 46, 60, 213, 289
Hpy188III TCNNGA 2 cut(s) 170, 341
Hpy8I GTNNAC 1 cut(s) 130
Hpy99I CGWCG 1 cut(s) 455
HpyAV CCTTC 1 cut(s) 255
HpyCH4V TGCA 1 cut(s) 150
HpyF10VI GCNNNNNNNGC 1 cut(s) 241
HpyF3I CTNAG 1 cut(s) 45
Hsp92II CATG 1 cut(s) 436
KroI GCCGGC 1 cut(s) 15
KroNI GCCGGC 1 cut(s) 17
Kzo9I GATC 4 cut(s) 182, 265, 305, 465
LpnPI CCDG 9 cut(s) 29, 72, 95, 125, 152, 183, 245, 287, 327
LweI GCATC 1 cut(s) 163
MabI ACCWGGT 1 cut(s) 138
MaeI CTAG 1 cut(s) 125
MaeIII GTNAC 1 cut(s) 348
MalI GATC 4 cut(s) 184, 267, 307, 467
MboI GATC 4 cut(s) 182, 265, 305, 465
MflI RGATCY 2 cut(s) 182, 305
MhlI GDGCHC 1 cut(s) 398
MlsI TGGCCA 1 cut(s) 431
MluCI AATT 6 cut(s) 54, 61, 105, 113, 237, 399
MluNI TGGCCA 1 cut(s) 431
MnlI CCTC 1 cut(s) 417
Mox20I TGGCCA 1 cut(s) 431
MroNI GCCGGC 1 cut(s) 15
MscI TGGCCA 1 cut(s) 431
MseI TTAA 3 cut(s) 104, 134, 354
Msp20I TGGCCA 1 cut(s) 431
MspCI CTTAAG 1 cut(s) 353
MspI CCGG 1 cut(s) 16
MspR9I CCNGG 1 cut(s) 140
MvaI CCWGG 1 cut(s) 140
MwoI GCNNNNNNNGC 1 cut(s) 241
NaeI GCCGGC 1 cut(s) 17
NdeII GATC 4 cut(s) 182, 265, 305, 465
NgoMIV GCCGGC 1 cut(s) 15
NlaIII CATG 1 cut(s) 436
NlaIV GGNNCC 2 cut(s) 307, 396
PdiI GCCGGC 1 cut(s) 17
Psp6I CCWGG 1 cut(s) 138
PspGI CCWGG 1 cut(s) 138
PspN4I GGNNCC 2 cut(s) 307, 396
PspOMI GGGCCC 1 cut(s) 394
PspPI GGNCC 5 cut(s) 79, 161, 233, 394, 395
PsuI RGATCY 2 cut(s) 182, 305
RsaI GTAC 2 cut(s) 129, 449
RsaNI GTAC 2 cut(s) 128, 448
SaqAI TTAA 3 cut(s) 104, 134, 354
Sau3AI GATC 4 cut(s) 182, 265, 305, 465
Sau96I GGNCC 5 cut(s) 79, 161, 233, 394, 395
ScrFI CCNGG 1 cut(s) 140
SduI GDGCHC 1 cut(s) 398
SetI ASST 9 cut(s) 51, 103, 141, 207, 285, 300, 390, 409, 422
SexAI ACCWGGT 1 cut(s) 138
SfaNI GCATC 1 cut(s) 163
SfcI CTRYAG 1 cut(s) 177
SinI GGWCC 1 cut(s) 161
SmlI CTYRAG 1 cut(s) 353
SmoI CTYRAG 1 cut(s) 353
SpeI ACTAGT 1 cut(s) 124
Sse9I AATT 6 cut(s) 54, 61, 105, 113, 237, 399
SsiI CCGC 1 cut(s) 242
SspMI CTAG 1 cut(s) 125
StyD4I CCNGG 1 cut(s) 138
TaqI TCGA 4 cut(s) 33, 97, 342, 409
TasI AATT 6 cut(s) 54, 61, 105, 113, 237, 399
TatI WGTACW 1 cut(s) 127
Tru1I TTAA 3 cut(s) 104, 134, 354
Tru9I TTAA 3 cut(s) 104, 134, 354
TscAI CASTG 2 cut(s) 31, 235
TspDTI ATGAA 1 cut(s) 359
TspRI CASTG 2 cut(s) 31, 235
Vha464I CTTAAG 1 cut(s) 353
VpaK11BI GGWCC 1 cut(s) 161
XapI RAATTY 2 cut(s) 54, 61
XcmI CCANNNNNNNNNTGG 1 cut(s) 256
XspI CTAG 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.