Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0016681

Physical Location & Seq

Genomic Coordinates Forward (+)

41946833 .. 41947535

Gene Structure 703 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G018920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGTCAATTAGTCTTGTGGAACTCATTTTTGGTCATGTTTCATATAGGAATTTATCTTTCAACAAGGGCCTGACAGGACAACTTCGAGCTTCAATTGGAAAATTGACGAAACTAGTACACTTAAACCTGGTTGGTTGCAGTTTCTTTGGTCCTATTCCAGATGCTATAGGATCTCTAACGAAGCTGTCTTACCTATCTCTGAAAAACAATAGTTTCAGTGGGCCAATTCCGCCTTCCATTGGTAATCTGGCCGATCTTACTTTTATAGACCTATCTGACAACAAGCTTCAGGGATCCATCCCAGTCTCTAATGGGACTACACTTGGTCTTGATAAGTTACTTAAGGCGAGACGCTTTCATTTTGGGAACAATCAGCTCTCGGGCCCAATTCCACCTCGACTTTTCAGCTCAACGATGGCCATGATACATTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

144

Amino Acids

15.51

Weight (kDa)

10.01

Isoelectric Point (pI)

19.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016681)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74200 AT1G74200 AT1G74200
malus_domestica	MD10G1178000.v1.1
rosa_chinensis	RchiOBHm_Chr2g0137671
rosa_laevigata	RLG00000009540 RLG00000023880
rosa_roxburghii	Rroxscaffold_4G00287120
rosa_samantha	Rh2AG359700 Rh2AG462200 Rh4DG211200 Rh4DG239300 Rh7AG276800
rosa_wichuraiana	Rw4G018920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	230
AclWI	GGATC	3 cut(s)	178, 288, 301
AcoI	YGGCCR	2 cut(s)	249, 417
AcsI	RAATTY	1 cut(s)	49
AcuI	CTGAAG	1 cut(s)	272
AfaI	GTAC	1 cut(s)	117
AfiI	CCNNNNNNNGG	1 cut(s)	239
AflII	CTTAAG	1 cut(s)	341
AgsI	TTSAA	2 cut(s)	61, 93
AhlI	ACTAGT	1 cut(s)	112
AjnI	CCWGG	1 cut(s)	126
AjuI	GAANNNNNNNTTGG	4 cut(s)	12, 44, 217, 249
AluBI	AGCT	5 cut(s)	89, 184, 286, 376, 408
AluI	AGCT	5 cut(s)	89, 184, 286, 376, 408
Alw26I	GTCTC	2 cut(s)	310, 343
AlwI	GGATC	3 cut(s)	178, 288, 301
Ama87I	CYCGRG	1 cut(s)	379
AoxI	GGCC	5 cut(s)	67, 221, 249, 382, 417
ApaI	GGGCCC	1 cut(s)	386
ApoI	RAATTY	1 cut(s)	49
AspS9I	GGNCC	5 cut(s)	67, 149, 221, 382, 383
AvaI	CYCGRG	1 cut(s)	379
AvaII	GGWCC	1 cut(s)	149
BaeGI	GKGCMC	1 cut(s)	386
BaeI	ACNNNNGTAYC	1 cut(s)	416
BalI	TGGCCA	1 cut(s)	419
BamHI	GGATCC	1 cut(s)	293
BanII	GRGCYC	1 cut(s)	386
BarI	GAAGNNNNNNTAC	2 cut(s)	173, 205
BccI	CCATC	2 cut(s)	305, 409
BciT130I	CCWGG	1 cut(s)	128
BcoDI	GTCTC	2 cut(s)	310, 343
BcuI	ACTAGT	1 cut(s)	112
BfaI	CTAG	1 cut(s)	113
BfmI	CTRYAG	1 cut(s)	165
BfrI	CTTAAG	1 cut(s)	341
Bme1390I	CCNGG	1 cut(s)	128
Bme18I	GGWCC	1 cut(s)	149
BmeT110I	CYCGRG	1 cut(s)	379
BmgT120I	GGNCC	5 cut(s)	67, 149, 221, 382, 383
BmiI	GGNNCC	2 cut(s)	295, 384
BmrFI	CCNGG	1 cut(s)	128
BmrI	ACTGGG	1 cut(s)	296
BmsI	GCATC	1 cut(s)	151
BmuI	ACTGGG	1 cut(s)	296
Bsc4I	CCNNNNNNNGG	1 cut(s)	239
Bse1I	ACTGG	1 cut(s)	302
BseBI	CCWGG	1 cut(s)	128
BseGI	GGATG	1 cut(s)	297
BseLI	CCNNNNNNNGG	1 cut(s)	239
BseNI	ACTGG	1 cut(s)	302
BseSI	GKGCMC	1 cut(s)	386
BshFI	GGCC	5 cut(s)	69, 223, 251, 384, 419
BsiHKCI	CYCGRG	1 cut(s)	379
BslFI	GGGAC	1 cut(s)	328
BslI	CCNNNNNNNGG	1 cut(s)	239
BsmAI	GTCTC	2 cut(s)	310, 343
BsmBI	CGTCTC	1 cut(s)	343
BsmFI	GGGAC	1 cut(s)	328
BsnI	GGCC	5 cut(s)	69, 223, 251, 384, 419
BsoBI	CYCGRG	1 cut(s)	379
Bsp120I	GGGCCC	1 cut(s)	382
Bsp1286I	GDGCHC	1 cut(s)	386
Bsp143I	GATC	3 cut(s)	170, 253, 293
BspACI	CCGC	1 cut(s)	230
BspANI	GGCC	5 cut(s)	69, 223, 251, 384, 419
BspLI	GGNNCC	2 cut(s)	295, 384
BspPI	GGATC	3 cut(s)	178, 288, 301
BspTI	CTTAAG	1 cut(s)	341
BsrI	ACTGG	1 cut(s)	302
BssMI	GATC	3 cut(s)	170, 253, 293
Bst2UI	CCWGG	1 cut(s)	128
BstAFI	CTTAAG	1 cut(s)	341
BstF5I	GGATG	1 cut(s)	297
BstKTI	GATC	3 cut(s)	173, 256, 296
BstMAI	GTCTC	2 cut(s)	310, 343
BstMBI	GATC	3 cut(s)	170, 253, 293
BstMWI	GCNNNNNNNGC	1 cut(s)	229
BstNI	CCWGG	1 cut(s)	128
BstSCI	CCNGG	1 cut(s)	126
BstSFI	CTRYAG	1 cut(s)	165
BstSLI	GKGCMC	1 cut(s)	386
BstX2I	RGATCY	2 cut(s)	170, 293
BstYI	RGATCY	2 cut(s)	170, 293
BsuRI	GGCC	5 cut(s)	69, 223, 251, 384, 419
BtsCI	GGATG	1 cut(s)	297
BtsIMutI	CAGTG	1 cut(s)	223
Cfr13I	GGNCC	5 cut(s)	67, 149, 221, 382, 383
CseI	GACGC	1 cut(s)	360
CsiI	ACCWGGT	1 cut(s)	126
Csp6I	GTAC	1 cut(s)	116
CviAII	CATG	2 cut(s)	35, 421
CviQI	GTAC	1 cut(s)	116
DpnI	GATC	3 cut(s)	172, 255, 295
DpnII	GATC	3 cut(s)	170, 253, 293
EaeI	YGGCCR	2 cut(s)	249, 417
EciI	GGCGGA	1 cut(s)	219
Eco24I	GRGCYC	1 cut(s)	386
Eco47I	GGWCC	1 cut(s)	149
Eco57I	CTGAAG	1 cut(s)	272
Eco88I	CYCGRG	1 cut(s)	379
EcoO109I	RGGNCCY	1 cut(s)	67
EcoRII	CCWGG	1 cut(s)	126
EcoT38I	GRGCYC	1 cut(s)	386
Esp3I	CGTCTC	1 cut(s)	343
FaeI	CATG	2 cut(s)	38, 424
FaiI	YATR	6 cut(s)	36, 43, 45, 167, 266, 422
FaqI	GGGAC	1 cut(s)	328
FatI	CATG	2 cut(s)	34, 420
FokI	GGATG	1 cut(s)	284
FriOI	GRGCYC	1 cut(s)	386
FspBI	CTAG	1 cut(s)	113
HaeIII	GGCC	5 cut(s)	69, 223, 251, 384, 419
HgaI	GACGC	1 cut(s)	360
Hin1II	CATG	2 cut(s)	38, 424
HindIII	AAGCTT	1 cut(s)	284
Hpy166II	GTNNAC	1 cut(s)	118
Hpy188I	TCNGA	2 cut(s)	201, 277
Hpy188III	TCNNGA	2 cut(s)	158, 329
Hpy8I	GTNNAC	1 cut(s)	118
HpyAV	CCTTC	1 cut(s)	243
HpyCH4V	TGCA	1 cut(s)	138
HpyF10VI	GCNNNNNNNGC	1 cut(s)	229
Hsp92II	CATG	2 cut(s)	38, 424
Kzo9I	GATC	3 cut(s)	170, 253, 293
LpnPI	CCDG	8 cut(s)	60, 83, 113, 140, 171, 233, 275, 315
LweI	GCATC	1 cut(s)	151
MabI	ACCWGGT	1 cut(s)	126
MaeI	CTAG	1 cut(s)	113
MaeIII	GTNAC	1 cut(s)	336
MalI	GATC	3 cut(s)	172, 255, 295
MboI	GATC	3 cut(s)	170, 253, 293
MfeI	CAATTG	1 cut(s)	93
MflI	RGATCY	2 cut(s)	170, 293
MhlI	GDGCHC	1 cut(s)	386
MlsI	TGGCCA	1 cut(s)	419
MluCI	AATT	6 cut(s)	6, 49, 93, 101, 225, 387
MluNI	TGGCCA	1 cut(s)	419
MnlI	CCTC	1 cut(s)	405
Mox20I	TGGCCA	1 cut(s)	419
MscI	TGGCCA	1 cut(s)	419
MseI	TTAA	2 cut(s)	122, 342
Msp20I	TGGCCA	1 cut(s)	419
MspCI	CTTAAG	1 cut(s)	341
MspR9I	CCNGG	1 cut(s)	128
MunI	CAATTG	1 cut(s)	93
MvaI	CCWGG	1 cut(s)	128
MwoI	GCNNNNNNNGC	1 cut(s)	229
NdeII	GATC	3 cut(s)	170, 253, 293
NlaIII	CATG	2 cut(s)	38, 424
NlaIV	GGNNCC	2 cut(s)	295, 384
Psp6I	CCWGG	1 cut(s)	126
PspGI	CCWGG	1 cut(s)	126
PspN4I	GGNNCC	2 cut(s)	295, 384
PspOMI	GGGCCC	1 cut(s)	382
PspPI	GGNCC	5 cut(s)	67, 149, 221, 382, 383
PsuI	RGATCY	2 cut(s)	170, 293
RsaI	GTAC	1 cut(s)	117
RsaNI	GTAC	1 cut(s)	116
SaqAI	TTAA	2 cut(s)	122, 342
Sau3AI	GATC	3 cut(s)	170, 253, 293
Sau96I	GGNCC	5 cut(s)	67, 149, 221, 382, 383
ScrFI	CCNGG	1 cut(s)	128
SduI	GDGCHC	1 cut(s)	386
SetI	ASST	9 cut(s)	91, 129, 186, 195, 273, 288, 378, 397, 410
SexAI	ACCWGGT	1 cut(s)	126
SfaNI	GCATC	1 cut(s)	151
SfcI	CTRYAG	1 cut(s)	165
SinI	GGWCC	1 cut(s)	149
SmlI	CTYRAG	1 cut(s)	341
SmoI	CTYRAG	1 cut(s)	341
SpeI	ACTAGT	1 cut(s)	112
Sse9I	AATT	6 cut(s)	6, 49, 93, 101, 225, 387
SsiI	CCGC	1 cut(s)	230
SspMI	CTAG	1 cut(s)	113
StyD4I	CCNGG	1 cut(s)	126
TaqI	TCGA	2 cut(s)	85, 397
TasI	AATT	6 cut(s)	6, 49, 93, 101, 225, 387
TatI	WGTACW	1 cut(s)	115
Tru1I	TTAA	2 cut(s)	122, 342
Tru9I	TTAA	2 cut(s)	122, 342
TscAI	CASTG	1 cut(s)	223
TspDTI	ATGAA	2 cut(s)	30, 347
TspRI	CASTG	1 cut(s)	223
Vha464I	CTTAAG	1 cut(s)	341
VpaK11BI	GGWCC	1 cut(s)	149
XapI	RAATTY	1 cut(s)	49
XcmI	CCANNNNNNNNNTGG	1 cut(s)	244
XspI	CTAG	1 cut(s)	113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.