AT1G75260

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0012084
Physical Location & Seq
Forward (+)
28247641 .. 28249485
1845 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G75260.1

Sequence Viewer

Length: 1542 bp
ATGCCACCTTTCCGTTTTCGCATCCCATTCTTCTCCTCCAACTCTCCTTCTCGTATCTCTTCAGGGACTTCTTCGCCATCGCCACCACCTACTCCTCCTTCACGCCCTCCTTTTCGTCCTGCAGGCATCGCTCAGCCGTCGAAGTCAGAAACAAAGCCCAAGGCGTCTCCGTCACTTTCTAGGAGTAGAAGTAATGTTGCAGCCCTAGCTGCTTCTTCGTCCGCGTCTCAATTGCCTTCTCTCGGTGCAGCCACGCCAACTCGCCTGGCGAAACAGACTAACCAACAATCTGGTTCTCCATCAAAGAAACTGGATTCTCTGAGGATGGAGGAACAAAAGGTGGCGACAAAAGAGAAGCCACCGGGAGAAACTGAAAAAATAGCTGAAGAGAATATCAGTCCTGTAAAAGAGAAACCTCCGATTGGAGCTCGTCCAGAAGAGCATTTAGAACAGAAAGAAACAGAGGCAGTGCAAGAACAGGGGAGGAATACTGAAGCAGCGAGACTTGTGGTGCAAGAAAATAAGAAAGTCCTTCCTGAAGGCAGTGGGAAGAAGTCAGCAGCAAATCAGGGACAACAGAAGATAGAAGAAATCGAGAAAATTGCGTTACAAGAAAGGAAGAAAGTTCTTCATGACGACGGTGTACAGAAGTTAGAAGCAGATCAGGGACAACAGAAGAGCAAAGAAACTGAGAAACTTGCATTACAAGAAACGAAGAGATCACTTCAGGCGGTAGGTAGAGAAGATGCAACGCGAAGCAAAACCACACGACATATGGCAGCAGCATCAGAAACCACGAGAGGACCGAGAGATCTACCGGAGAAAAAGACAGAAACGCAAAACAGAACAGAGATTCCTACCGATGACAATCATCAGAAAACCAAAGGCGCATTAACGAGTAATCTTGGAAATCCGAGAGTTACGAATAGAGAAGGATCATCTTCAATGAGCAGAAAGATTAAAGAAGACATCAGAGATGGAATCAGTAAGCTAACTTGGGGAAAAAGCAACGGTGATGATAAATCAGTGAGCGTCTACACTCTCACTGGAGAAAACAAAGGAGCCACAATGGGAATAGGTTCTGAGAAAGACAAGAAAGACGGTGAGGTTCATATTCGCCGTGGCTACAGAAGTAACCCAGACGAGAGCTCTAACACCACAGCCACAGAAACCGAAAACCCTAAAGACGACGAAGCAGAGGAAGAAGCGAGTTTTACGGCATACATAAACGGAAACACTCAAGGGATAAACAATTCAATTGTAGTCGAGAGTTCAGTAAGCGAGAATGATCCAGGAGTTCATATGAGTTTTAAGTTTGAAATATTGAAGAAGGAAGTTATATATCCGCCAGAGAATGTGGAGGAGAAGAAACCGGAGACGGTGACCGTAACGAAGAAGTTAAAGAATGAGCCGAGAGTAAGGAGGAGATGCTTGAGAGGGTTACTTGCAGAGTCGAGTGAGTCGGAGCCAGATAATCCCTTGAAGCCACGGAGACATGGTTGCCGGTTTACTTGTAAAGATAAAGATATAGAGAACACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

513

Amino Acids

56.44

Weight (kDa)

9.17

Isoelectric Point (pI)

60.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012084)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G75260
fragaria_vesca FvH4_2g39641
malus_domestica MD08G1030100.v1.1 MD15G1025500.v1.1
prunus_persica Prupe.1G377800_v2.0.a1
pyrus_communis pycom08g02390 pycom15g02190
rosa_chinensis RchiOBHm_Chr6g0301251
rosa_laevigata RLG00000011267
rosa_multiflora Rmu_sc0013354.1_g000012
rosa_roxburghii Rroxscaffold_171G00441310 Rroxscaffold_7G00167040
rosa_rugosa Rorug06G0302700
rosa_samantha Rh6AG416100 Rh6BG422800 Rh6BG422900 Rh6CG430500 Rh6DG416100
rosa_wichuraiana Rw6G036030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1035
AccII CGCG 2 cut(s) 224, 754
AciI CCGC 3 cut(s) 222, 731, 1346
AclWI GGATC 2 cut(s) 943, 1283
AcuI CTGAAG 5 cut(s) 45, 405, 513, 558, 710
AcyI GRCGYC 1 cut(s) 164
AfaI GTAC 1 cut(s) 645
AfiI CCNNNNNNNGG 2 cut(s) 242, 422
AgsI TTSAA 5 cut(s) 945, 1257, 1319, 1327, 1483
AjnI CCWGG 2 cut(s) 264, 1291
AloI GAACNNNNNNTCC 2 cut(s) 838, 870
AluBI AGCT 5 cut(s) 209, 383, 428, 991, 1149
AluI AGCT 5 cut(s) 209, 383, 428, 991, 1149
Alw21I GWGCWC 2 cut(s) 430, 1151
Alw26I GTCTC 5 cut(s) 171, 231, 496, 1370, 1486
AlwI GGATC 2 cut(s) 943, 1283
ApeKI GCWGC 7 cut(s) 200, 209, 248, 497, 560, 779, 782
Asp700I GAANNNNTTC 1 cut(s) 1078
AspLEI GCGC 1 cut(s) 890
AspS9I GGNCC 1 cut(s) 803
AsuC2I CCSGG 1 cut(s) 363
AsuHPI GGTGA 3 cut(s) 1025, 1115, 1393
AvaII GGWCC 1 cut(s) 803
BanII GRGCYC 2 cut(s) 430, 1151
BauI CACGAG 1 cut(s) 796
BbsI GAAGAC 1 cut(s) 972
Bbv12I GWGCWC 2 cut(s) 430, 1151
BbvI GCAGC 7 cut(s) 196, 212, 260, 509, 572, 791, 794
BccI CCATC 4 cut(s) 85, 307, 319, 971
BceAI ACGGC 3 cut(s) 121, 1104, 1233
BcgI CGANNNNNNTGC 2 cut(s) 584, 618
BciT130I CCWGG 2 cut(s) 266, 1293
BcnI CCSGG 1 cut(s) 363
BcoDI GTCTC 5 cut(s) 171, 231, 496, 1370, 1486
BfaI CTAG 2 cut(s) 180, 206
BfmI CTRYAG 2 cut(s) 120, 1126
BglII AGATCT 1 cut(s) 811
BisI GCNGC 7 cut(s) 201, 210, 249, 498, 561, 780, 783
BlpI GCTNAGC 1 cut(s) 132
BlsI GCNGC 7 cut(s) 202, 211, 250, 499, 562, 781, 784
Bme1390I CCNGG 3 cut(s) 266, 363, 1293
Bme18I GGWCC 1 cut(s) 803
BmgT120I GGNCC 1 cut(s) 803
BmiI GGNNCC 2 cut(s) 1063, 1467
BmrFI CCNGG 3 cut(s) 266, 363, 1293
BmsI GCATC 5 cut(s) 30, 135, 736, 794, 1418
BpiI GAAGAC 1 cut(s) 972
BpmI CTGGAG 1 cut(s) 1068
Bpu1102I GCTNAGC 1 cut(s) 132
BpuEI CTTGAG 2 cut(s) 1224, 1453
BpuMI CCSGG 1 cut(s) 363
BsaBI GATNNNNATC 1 cut(s) 867
BsaHI GRCGYC 1 cut(s) 164
BsaJI CCNNGG 3 cut(s) 159, 1120, 1487
BsaWI WCCGGW 2 cut(s) 817, 1372
BsaXI ACNNNNNCTCC 4 cut(s) 175, 205, 1483, 1513
Bsc4I CCNNNNNNNGG 2 cut(s) 242, 422
Bse118I RCCGGY 1 cut(s) 1503
Bse1I ACTGG 2 cut(s) 315, 1051
Bse8I GATNNNNATC 1 cut(s) 867
BseBI CCWGG 2 cut(s) 266, 1293
BseDI CCNNGG 3 cut(s) 159, 1120, 1487
BseGI GGATG 2 cut(s) 21, 330
BseJI GATNNNNATC 1 cut(s) 867
BseLI CCNNNNNNNGG 2 cut(s) 242, 422
BseMII CTCAG 4 cut(s) 146, 311, 681, 1074
BseNI ACTGG 2 cut(s) 315, 1051
BseRI GAGGAG 4 cut(s) 25, 84, 1376, 1438
BseXI GCAGC 7 cut(s) 196, 212, 260, 509, 572, 791, 794
BsgI GTGCAG 1 cut(s) 267
Bsh1236I CGCG 2 cut(s) 224, 754
BsiHKAI GWGCWC 2 cut(s) 430, 1151
BsiSI CCGG 4 cut(s) 362, 818, 1373, 1504
BslFI GGGAC 3 cut(s) 79, 585, 681
BslI CCNNNNNNNGG 2 cut(s) 242, 422
BsmAI GTCTC 5 cut(s) 171, 231, 496, 1370, 1486
BsmBI CGTCTC 3 cut(s) 171, 231, 1370
BsmFI GGGAC 3 cut(s) 79, 585, 681
Bsp1286I GDGCHC 2 cut(s) 430, 1151
Bsp1407I TGTACA 1 cut(s) 643
Bsp143I GATC 5 cut(s) 661, 719, 811, 935, 1288
Bsp1720I GCTNAGC 1 cut(s) 132
BspACI CCGC 3 cut(s) 222, 731, 1346
BspCNI CTCAG 4 cut(s) 145, 312, 682, 1075
BspFNI CGCG 2 cut(s) 224, 754
BspHI TCATGA 1 cut(s) 631
BspLI GGNNCC 2 cut(s) 1063, 1467
BspMAI CTGCAG 1 cut(s) 124
BspPI GGATC 2 cut(s) 943, 1283
BspQI GCTCTTC 2 cut(s) 432, 671
BsrFI RCCGGY 1 cut(s) 1503
BsrGI TGTACA 1 cut(s) 643
BsrI ACTGG 2 cut(s) 315, 1051
BssAI RCCGGY 1 cut(s) 1503
BssECI CCNNGG 3 cut(s) 159, 1120, 1487
BssMI GATC 5 cut(s) 661, 719, 811, 935, 1288
BssNI GRCGYC 1 cut(s) 164
BssSI CACGAG 1 cut(s) 796
BssT1I CCWWGG 1 cut(s) 159
Bst2BI CACGAG 1 cut(s) 796
Bst2UI CCWGG 2 cut(s) 266, 1293
Bst4CI ACNGT 5 cut(s) 641, 1013, 1103, 1381, 1387
Bst6I CTCTTC 5 cut(s) 64, 381, 432, 671, 710
BstACI GRCGYC 1 cut(s) 164
BstAUI TGTACA 1 cut(s) 643
BstC8I GCNNGC 1 cut(s) 124
BstDEI CTNAG 4 cut(s) 132, 320, 690, 1083
BstDSI CCRYGG 2 cut(s) 1120, 1487
BstEII GGTNACC 1 cut(s) 1381
BstF5I GGATG 2 cut(s) 21, 330
BstFNI CGCG 2 cut(s) 224, 754
BstHHI GCGC 1 cut(s) 890
BstKTI GATC 5 cut(s) 664, 722, 814, 938, 1291
BstMAI GTCTC 5 cut(s) 171, 231, 496, 1370, 1486
BstMBI GATC 5 cut(s) 661, 719, 811, 935, 1288
BstMWI GCNNNNNNNGC 3 cut(s) 128, 206, 209
BstNI CCWGG 2 cut(s) 266, 1293
BstPI GGTNACC 1 cut(s) 1381
BstSCI CCNGG 3 cut(s) 264, 361, 1291
BstSFI CTRYAG 2 cut(s) 120, 1126
BstUI CGCG 2 cut(s) 224, 754
BstV1I GCAGC 7 cut(s) 196, 212, 260, 509, 572, 791, 794
BstV2I GAAGAC 1 cut(s) 972
BstX2I RGATCY 1 cut(s) 811
BstXI CCANNNNNNTGG 1 cut(s) 290
BstYI RGATCY 1 cut(s) 811
BtgI CCRYGG 2 cut(s) 1120, 1487
BtgZI GCGATG 2 cut(s) 63, 112
BtsCI GGATG 2 cut(s) 21, 330
BtsI GCAGTG 2 cut(s) 474, 550
BtsIMutI CAGTG 4 cut(s) 474, 550, 1032, 1044
Cac8I GCNNGC 1 cut(s) 124
CciI TCATGA 1 cut(s) 631
CfoI GCGC 1 cut(s) 890
Cfr10I RCCGGY 1 cut(s) 1503
Cfr13I GGNCC 1 cut(s) 803
CseI GACGC 3 cut(s) 153, 213, 1021
Csp6I GTAC 1 cut(s) 644
CviAII CATG 2 cut(s) 632, 1496
CviQI GTAC 1 cut(s) 644
DdeI CTNAG 4 cut(s) 132, 320, 690, 1083
DpnI GATC 5 cut(s) 663, 721, 813, 937, 1290
DpnII GATC 5 cut(s) 661, 719, 811, 935, 1288
Eam1104I CTCTTC 5 cut(s) 64, 381, 432, 671, 710
EarI CTCTTC 5 cut(s) 64, 381, 432, 671, 710
EciI GGCGGA 1 cut(s) 1335
Ecl136II GAGCTC 2 cut(s) 428, 1149
Eco130I CCWWGG 1 cut(s) 159
Eco24I GRGCYC 2 cut(s) 430, 1151
Eco47I GGWCC 1 cut(s) 803
Eco53kI GAGCTC 2 cut(s) 428, 1149
Eco57I CTGAAG 5 cut(s) 45, 405, 513, 558, 710
Eco91I GGTNACC 1 cut(s) 1381
EcoICRI GAGCTC 2 cut(s) 428, 1149
EcoO65I GGTNACC 1 cut(s) 1381
EcoRII CCWGG 2 cut(s) 264, 1291
EcoT14I CCWWGG 1 cut(s) 159
EcoT38I GRGCYC 2 cut(s) 430, 1151
ErhI CCWWGG 1 cut(s) 159
Esp3I CGTCTC 3 cut(s) 171, 231, 1370
FaeI CATG 2 cut(s) 635, 1499
FaqI GGGAC 3 cut(s) 79, 585, 681
FatI CATG 2 cut(s) 631, 1495
FauNDI CATATG 2 cut(s) 774, 1302
FblI GTMKAC 1 cut(s) 1035
Fnu4HI GCNGC 7 cut(s) 201, 210, 249, 498, 561, 780, 783
FokI GGATG 2 cut(s) 8, 337
FriOI GRGCYC 2 cut(s) 430, 1151
Fsp4HI GCNGC 7 cut(s) 201, 210, 249, 498, 561, 780, 783
FspBI CTAG 2 cut(s) 180, 206
GlaI GCGC 1 cut(s) 889
GluI GCNGC 7 cut(s) 201, 210, 249, 498, 561, 780, 783
GsuI CTGGAG 1 cut(s) 1068
HapII CCGG 4 cut(s) 362, 818, 1373, 1504
HgaI GACGC 3 cut(s) 153, 213, 1021
HhaI GCGC 1 cut(s) 890
Hin1I GRCGYC 1 cut(s) 164
Hin1II CATG 2 cut(s) 635, 1499
Hin6I GCGC 1 cut(s) 888
HinP1I GCGC 1 cut(s) 888
HinfI GANTC 5 cut(s) 314, 853, 981, 1451, 1460
HpaII CCGG 4 cut(s) 362, 818, 1373, 1504
HphI GGTGA 3 cut(s) 1025, 1115, 1393
Hpy166II GTNNAC 3 cut(s) 644, 1036, 1509
Hpy188I TCNGA 9 cut(s) 148, 321, 420, 790, 876, 915, 974, 1084, 1465
Hpy188III TCNNGA 5 cut(s) 434, 536, 595, 632, 1267
Hpy8I GTNNAC 3 cut(s) 644, 1036, 1509
Hpy99I CGWCG 3 cut(s) 142, 641, 1193
HpyAV CCTTC 7 cut(s) 57, 108, 246, 533, 542, 926, 1324
HpyCH4III ACNGT 5 cut(s) 641, 1013, 1103, 1381, 1387
HpyCH4V TGCA 8 cut(s) 122, 200, 248, 472, 514, 701, 749, 1448
HpyF10VI GCNNNNNNNGC 3 cut(s) 128, 206, 209
HpyF3I CTNAG 4 cut(s) 132, 320, 690, 1083
Hsp92I GRCGYC 1 cut(s) 164
Hsp92II CATG 2 cut(s) 635, 1499
HspAI GCGC 1 cut(s) 888
Kzo9I GATC 5 cut(s) 661, 719, 811, 935, 1288
LguI GCTCTTC 2 cut(s) 432, 671
LmnI GCTCC 3 cut(s) 425, 1061, 1465
Lsp1109I GCAGC 7 cut(s) 196, 212, 260, 509, 572, 791, 794
LweI GCATC 5 cut(s) 30, 135, 736, 794, 1418
MaeI CTAG 2 cut(s) 180, 206
MaeIII GTNAC 7 cut(s) 171, 606, 919, 1133, 1381, 1387, 1440
MalI GATC 5 cut(s) 663, 721, 813, 937, 1290
MboI GATC 5 cut(s) 661, 719, 811, 935, 1288
MfeI CAATTG 2 cut(s) 230, 1257
MflI RGATCY 1 cut(s) 811
MhlI GDGCHC 2 cut(s) 430, 1151
MluCI AATT 4 cut(s) 230, 600, 1252, 1257
MlyI GAGTC 2 cut(s) 1460, 1469
MmeI TCCRAC 2 cut(s) 63, 1443
MroXI GAANNNNTTC 1 cut(s) 1078
MseI TTAA 5 cut(s) 893, 960, 1311, 1400, 1540
MspI CCGG 4 cut(s) 362, 818, 1373, 1504
MspR9I CCNGG 3 cut(s) 266, 363, 1293
MunI CAATTG 2 cut(s) 230, 1257
MvaI CCWGG 2 cut(s) 266, 1293
MvnI CGCG 2 cut(s) 224, 754
MwoI GCNNNNNNNGC 3 cut(s) 128, 206, 209
NciI CCSGG 1 cut(s) 363
NdeI CATATG 2 cut(s) 774, 1302
NdeII GATC 5 cut(s) 661, 719, 811, 935, 1288
NlaIII CATG 2 cut(s) 635, 1499
NlaIV GGNNCC 2 cut(s) 1063, 1467
NmeAIII GCCGAG 1 cut(s) 1437
NmuCI GTSAC 2 cut(s) 171, 1381
PagI TCATGA 1 cut(s) 631
PciSI GCTCTTC 2 cut(s) 432, 671
PcsI WCGNNNNNNNCGW 1 cut(s) 803
PdmI GAANNNNTTC 1 cut(s) 1078
PfeI GAWTC 3 cut(s) 314, 853, 981
PfoI TCCNGGA 1 cut(s) 1291
PkrI GCNGC 7 cut(s) 202, 211, 250, 499, 562, 781, 784
PleI GAGTC 2 cut(s) 1459, 1468
PpsI GAGTC 2 cut(s) 1459, 1468
Psp124BI GAGCTC 2 cut(s) 430, 1151
Psp6I CCWGG 2 cut(s) 264, 1291
PspEI GGTNACC 1 cut(s) 1381
PspGI CCWGG 2 cut(s) 264, 1291
PspN4I GGNNCC 2 cut(s) 1063, 1467
PspPI GGNCC 1 cut(s) 803
PstI CTGCAG 1 cut(s) 124
PsuI RGATCY 1 cut(s) 811
RsaI GTAC 1 cut(s) 645
RsaNI GTAC 1 cut(s) 644
SacI GAGCTC 2 cut(s) 430, 1151
SapI GCTCTTC 2 cut(s) 432, 671
SaqAI TTAA 5 cut(s) 893, 960, 1311, 1400, 1540
SatI GCNGC 7 cut(s) 201, 210, 249, 498, 561, 780, 783
Sau3AI GATC 5 cut(s) 661, 719, 811, 935, 1288
Sau96I GGNCC 1 cut(s) 803
SbfI CCTGCAGG 1 cut(s) 124
SchI GAGTC 2 cut(s) 1460, 1469
ScrFI CCNGG 3 cut(s) 266, 363, 1293
SdaI CCTGCAGG 1 cut(s) 124
SduI GDGCHC 2 cut(s) 430, 1151
SfaNI GCATC 5 cut(s) 30, 135, 736, 794, 1418
SfcI CTRYAG 2 cut(s) 120, 1126
SinI GGWCC 1 cut(s) 803
SmlI CTYRAG 2 cut(s) 1239, 1432
SmoI CTYRAG 2 cut(s) 1239, 1432
Sse8387I CCTGCAGG 1 cut(s) 124
Sse9I AATT 4 cut(s) 230, 600, 1252, 1257
SsiI CCGC 3 cut(s) 222, 731, 1346
SspI AATATT 1 cut(s) 1323
SspMI CTAG 2 cut(s) 180, 206
SstI GAGCTC 2 cut(s) 430, 1151
StyD4I CCNGG 3 cut(s) 264, 361, 1291
StyI CCWWGG 1 cut(s) 159
TaaI ACNGT 5 cut(s) 641, 1013, 1103, 1381, 1387
TaqI TCGA 4 cut(s) 140, 594, 1266, 1454
TaqII GACCGA 1 cut(s) 820
TasI AATT 4 cut(s) 230, 600, 1252, 1257
TatI WGTACW 1 cut(s) 643
TfiI GAWTC 3 cut(s) 314, 853, 981
Tru1I TTAA 5 cut(s) 893, 960, 1311, 1400, 1540
Tru9I TTAA 5 cut(s) 893, 960, 1311, 1400, 1540
TscAI CASTG 4 cut(s) 474, 550, 1032, 1051
TseFI GTSAC 2 cut(s) 171, 1381
TseI GCWGC 7 cut(s) 200, 209, 248, 497, 560, 779, 782
Tsp45I GTSAC 2 cut(s) 171, 1381
TspDTI ATGAA 3 cut(s) 620, 1100, 1289
TspGWI ACGGA 3 cut(s) 159, 1245, 1504
TspRI CASTG 4 cut(s) 474, 550, 1032, 1051
VpaK11BI GGWCC 1 cut(s) 803
XcmI CCANNNNNNNNNTGG 1 cut(s) 772
XmiI GTMKAC 1 cut(s) 1035
XmnI GAANNNNTTC 1 cut(s) 1078
XspI CTAG 2 cut(s) 180, 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.