RchiOBHm_Chr6g0301251

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0012084
Physical Location & Seq
Forward (+)
61731510 .. 61733804
2295 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27055

Sequence Viewer

Length: 702 bp
ATGCTGGCCACCACCAGCTCTGATAAGAAACCTATCAAAACTGAGAGGAGCTCCTCAAGGGTGTATATTCGAAAGATGGTTGCATCGACTGGGGAACGACCTCCCCCAAATAAAGAAATCAGGGAAGTTGATAACCTGGCCATCGGGCAGCAAATGCTTGATAAGCCAGTTGGTGTTGTGACCTTAACTGGCAAAAACAGAGGAGCAGTAATGCTCTTAAGCTCAGAACCAGAAAAACGAGAAGAACCAGTCCACATATGCCACGGTTACAAGCTCAATCCAGATGATAATGAAGCTACTACTGATGGAGAGGTAAGCAATGAGGAAGAAATTTTCGAGGACCAGATATTCGAAGGATATCAACAATACATCAACAGCAATGTCCAGAGCATCAATAACTCTATTGTGTGCAGTAGTTCTGTCACGGAAAGGAATCCAGGTGTTGCTGTTTTTTCTTCAAACCCACCAGAATCCATCGATTCAAATAAAGAATCAGATTCCCTCCAAACACACAAGGCTCAAGTCATCCAAACTCCTGCTGATAAGCTTACTCATGAATCCACTGTAAGACGGCGATGCCTTGGAGGGTTATTCATGGAATCCAGTGACTCAGAACCAGATAATCCCGCCAAGCCTCGACGTCATGGCTGCCGCTATATTTGCAGGAAGGAAAGCAAGGAAACAGAGATTGGTGTTGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

233

Amino Acids

25.91

Weight (kDa)

5.52

Isoelectric Point (pI)

59.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012084)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G75260
fragaria_vesca FvH4_2g39641
malus_domestica MD08G1030100.v1.1 MD15G1025500.v1.1
prunus_persica Prupe.1G377800_v2.0.a1
pyrus_communis pycom08g02390 pycom15g02190
rosa_chinensis RchiOBHm_Chr6g0301251
rosa_laevigata RLG00000011267
rosa_multiflora Rmu_sc0013354.1_g000012
rosa_roxburghii Rroxscaffold_171G00441310 Rroxscaffold_7G00167040
rosa_rugosa Rorug06G0302700
rosa_samantha Rh6AG416100 Rh6BG422800 Rh6BG422900 Rh6CG430500 Rh6DG416100
rosa_wichuraiana Rw6G036030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 643
AciI CCGC 2 cut(s) 627, 652
AcoI YGGCCR 2 cut(s) 6, 138
AcsI RAATTY 1 cut(s) 330
AcyI GRCGYC 1 cut(s) 640
AflII CTTAAG 1 cut(s) 217
AgsI TTSAA 2 cut(s) 459, 483
AjnI CCWGG 2 cut(s) 135, 436
AjuI GAANNNNNNNTTGG 1 cut(s) 672
AluBI AGCT 6 cut(s) 18, 51, 222, 274, 296, 547
AluI AGCT 6 cut(s) 18, 51, 222, 274, 296, 547
Alw21I GWGCWC 1 cut(s) 53
AoxI GGCC 2 cut(s) 6, 138
ApeKI GCWGC 2 cut(s) 148, 648
ApoI RAATTY 1 cut(s) 330
ArsI GACNNNNNNTTYG 2 cut(s) 332, 364
AspS9I GGNCC 1 cut(s) 340
AsuII TTCGAA 2 cut(s) 70, 351
AvaII GGWCC 1 cut(s) 340
BalI TGGCCA 2 cut(s) 8, 140
BanII GRGCYC 1 cut(s) 53
Bbv12I GWGCWC 1 cut(s) 53
BbvI GCAGC 2 cut(s) 160, 635
BccI CCATC 4 cut(s) 70, 149, 299, 482
BceAI ACGGC 1 cut(s) 587
BciT130I CCWGG 2 cut(s) 137, 438
BfrI CTTAAG 1 cut(s) 217
BisI GCNGC 3 cut(s) 149, 649, 652
BlsI GCNGC 3 cut(s) 150, 650, 653
Bme1390I CCNGG 2 cut(s) 137, 438
Bme18I GGWCC 1 cut(s) 340
BmgT120I GGNCC 1 cut(s) 340
BmrFI CCNGG 2 cut(s) 137, 438
BmrI ACTGGG 1 cut(s) 99
BmsI GCATC 3 cut(s) 92, 399, 566
BmuI ACTGGG 1 cut(s) 99
BplI GAGNNNNNCTC 2 cut(s) 35, 67
Bpu14I TTCGAA 2 cut(s) 70, 351
BpuEI CTTGAG 2 cut(s) 40, 504
Bsa29I ATCGAT 1 cut(s) 477
BsaHI GRCGYC 1 cut(s) 640
BsaJI CCNNGG 2 cut(s) 262, 580
Bse1I ACTGG 5 cut(s) 94, 167, 193, 248, 603
Bse3DI GCAATG 2 cut(s) 325, 385
BseBI CCWGG 2 cut(s) 137, 438
BseCI ATCGAT 1 cut(s) 477
BseDI CCNNGG 2 cut(s) 262, 580
BseGI GGATG 1 cut(s) 525
BseMI GCAATG 2 cut(s) 325, 385
BseMII CTCAG 3 cut(s) 33, 237, 624
BseNI ACTGG 5 cut(s) 94, 167, 193, 248, 603
BseRI GAGGAG 3 cut(s) 43, 61, 216
BseXI GCAGC 2 cut(s) 160, 635
BsgI GTGCAG 1 cut(s) 430
BshFI GGCC 2 cut(s) 8, 140
BshVI ATCGAT 1 cut(s) 477
BsiHKAI GWGCWC 1 cut(s) 53
BsnI GGCC 2 cut(s) 8, 140
Bsp119I TTCGAA 2 cut(s) 70, 351
Bsp1286I GDGCHC 1 cut(s) 53
BspACI CCGC 2 cut(s) 627, 652
BspANI GGCC 2 cut(s) 8, 140
BspCNI CTCAG 3 cut(s) 34, 236, 623
BspDI ATCGAT 1 cut(s) 477
BspHI TCATGA 1 cut(s) 553
BspT104I TTCGAA 2 cut(s) 70, 351
BspTI CTTAAG 1 cut(s) 217
BsrDI GCAATG 2 cut(s) 325, 385
BsrI ACTGG 5 cut(s) 94, 167, 193, 248, 603
BssECI CCNNGG 2 cut(s) 262, 580
BssNI GRCGYC 1 cut(s) 640
BssT1I CCWWGG 1 cut(s) 580
Bst2UI CCWGG 2 cut(s) 137, 438
Bst4CI ACNGT 2 cut(s) 266, 565
BstACI GRCGYC 1 cut(s) 640
BstAFI CTTAAG 1 cut(s) 217
BstAPI GCANNNNNTGC 1 cut(s) 154
BstBI TTCGAA 2 cut(s) 70, 351
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 3 cut(s) 42, 223, 610
BstDSI CCRYGG 1 cut(s) 262
BstF5I GGATG 1 cut(s) 525
BstMWI GCNNNNNNNGC 3 cut(s) 154, 163, 660
BstNI CCWGG 2 cut(s) 137, 438
BstSCI CCNGG 2 cut(s) 135, 436
BstV1I GCAGC 2 cut(s) 160, 635
Bsu15I ATCGAT 1 cut(s) 477
BsuRI GGCC 2 cut(s) 8, 140
BsuTUI ATCGAT 1 cut(s) 477
BtgI CCRYGG 1 cut(s) 262
BtgZI GCGATG 1 cut(s) 589
BtsCI GGATG 1 cut(s) 525
BtsIMutI CAGTG 2 cut(s) 561, 610
Cac8I GCNNGC 1 cut(s) 6
CciI TCATGA 1 cut(s) 553
Cfr13I GGNCC 1 cut(s) 340
ClaI ATCGAT 1 cut(s) 477
CviAII CATG 3 cut(s) 554, 595, 644
DdeI CTNAG 3 cut(s) 42, 223, 610
EaeI YGGCCR 2 cut(s) 6, 138
Ecl136II GAGCTC 1 cut(s) 51
Eco130I CCWWGG 1 cut(s) 580
Eco24I GRGCYC 1 cut(s) 53
Eco32I GATATC 1 cut(s) 359
Eco47I GGWCC 1 cut(s) 340
Eco53kI GAGCTC 1 cut(s) 51
EcoICRI GAGCTC 1 cut(s) 51
EcoRII CCWGG 2 cut(s) 135, 436
EcoRV GATATC 1 cut(s) 359
EcoT14I CCWWGG 1 cut(s) 580
EcoT38I GRGCYC 1 cut(s) 53
ErhI CCWWGG 1 cut(s) 580
FaeI CATG 3 cut(s) 557, 598, 647
FaiI YATR 7 cut(s) 66, 257, 259, 555, 596, 645, 657
FatI CATG 3 cut(s) 553, 594, 643
FauI CCCGC 1 cut(s) 634
FauNDI CATATG 1 cut(s) 257
Fnu4HI GCNGC 3 cut(s) 149, 649, 652
FokI GGATG 1 cut(s) 512
FriOI GRGCYC 1 cut(s) 53
Fsp4HI GCNGC 3 cut(s) 149, 649, 652
GluI GCNGC 3 cut(s) 149, 649, 652
HaeIII GGCC 2 cut(s) 8, 140
Hin1I GRCGYC 1 cut(s) 640
Hin1II CATG 3 cut(s) 557, 598, 647
HindIII AAGCTT 1 cut(s) 545
HinfI GANTC 8 cut(s) 433, 470, 479, 491, 497, 557, 599, 608
Hpy166II GTNNAC 1 cut(s) 253
Hpy188I TCNGA 4 cut(s) 22, 226, 496, 613
Hpy188III TCNNGA 3 cut(s) 281, 385, 554
Hpy8I GTNNAC 1 cut(s) 253
Hpy99I CGWCG 1 cut(s) 642
HpyAV CCTTC 2 cut(s) 347, 661
HpyCH4III ACNGT 2 cut(s) 266, 565
HpyCH4IV ACGT 1 cut(s) 640
HpyCH4V TGCA 3 cut(s) 83, 411, 663
HpyF10VI GCNNNNNNNGC 3 cut(s) 154, 163, 660
HpyF3I CTNAG 3 cut(s) 42, 223, 610
HpySE526I ACGT 1 cut(s) 640
Hsp92I GRCGYC 1 cut(s) 640
Hsp92II CATG 3 cut(s) 557, 598, 647
LmnI GCTCC 3 cut(s) 48, 56, 203
Lsp1109I GCAGC 2 cut(s) 160, 635
LweI GCATC 3 cut(s) 92, 399, 566
MaeII ACGT 1 cut(s) 640
MaeIII GTNAC 4 cut(s) 178, 266, 421, 605
MboII GAAGA 3 cut(s) 254, 338, 447
MhlI GDGCHC 1 cut(s) 53
MlsI TGGCCA 2 cut(s) 8, 140
MluCI AATT 1 cut(s) 330
MluNI TGGCCA 2 cut(s) 8, 140
MlyI GAGTC 1 cut(s) 602
Mox20I TGGCCA 2 cut(s) 8, 140
MscI TGGCCA 2 cut(s) 8, 140
MseI TTAA 2 cut(s) 185, 218
Msp20I TGGCCA 2 cut(s) 8, 140
MspCI CTTAAG 1 cut(s) 217
MspR9I CCNGG 2 cut(s) 137, 438
MvaI CCWGG 2 cut(s) 137, 438
MwoI GCNNNNNNNGC 3 cut(s) 154, 163, 660
NdeI CATATG 1 cut(s) 257
NlaIII CATG 3 cut(s) 557, 598, 647
NmuCI GTSAC 3 cut(s) 178, 421, 605
NspV TTCGAA 2 cut(s) 70, 351
PagI TCATGA 1 cut(s) 553
PfeI GAWTC 7 cut(s) 433, 470, 479, 491, 497, 557, 599
PkrI GCNGC 3 cut(s) 150, 650, 653
PleI GAGTC 1 cut(s) 602
PpsI GAGTC 1 cut(s) 602
Psp124BI GAGCTC 1 cut(s) 53
Psp6I CCWGG 2 cut(s) 135, 436
PspGI CCWGG 2 cut(s) 135, 436
PspPI GGNCC 1 cut(s) 340
SacI GAGCTC 1 cut(s) 53
SaqAI TTAA 2 cut(s) 185, 218
SatI GCNGC 3 cut(s) 149, 649, 652
Sau96I GGNCC 1 cut(s) 340
SchI GAGTC 1 cut(s) 602
ScrFI CCNGG 2 cut(s) 137, 438
SduI GDGCHC 1 cut(s) 53
SfaNI GCATC 3 cut(s) 92, 399, 566
SfuI TTCGAA 2 cut(s) 70, 351
SinI GGWCC 1 cut(s) 340
SmlI CTYRAG 3 cut(s) 55, 217, 519
SmoI CTYRAG 3 cut(s) 55, 217, 519
Sse9I AATT 1 cut(s) 330
SsiI CCGC 2 cut(s) 627, 652
SstI GAGCTC 1 cut(s) 53
StyD4I CCNGG 2 cut(s) 135, 436
StyI CCWWGG 1 cut(s) 580
TaaI ACNGT 2 cut(s) 266, 565
TaiI ACGT 1 cut(s) 643
TaqI TCGA 6 cut(s) 70, 86, 336, 351, 477, 637
TasI AATT 1 cut(s) 330
TauI GCSGC 1 cut(s) 654
TfiI GAWTC 7 cut(s) 433, 470, 479, 491, 497, 557, 599
Tru1I TTAA 2 cut(s) 185, 218
Tru9I TTAA 2 cut(s) 185, 218
TscAI CASTG 2 cut(s) 568, 610
TseFI GTSAC 3 cut(s) 178, 421, 605
TseI GCWGC 2 cut(s) 148, 648
Tsp45I GTSAC 3 cut(s) 178, 421, 605
TspDTI ATGAA 3 cut(s) 306, 570, 583
TspGWI ACGGA 1 cut(s) 440
TspRI CASTG 2 cut(s) 568, 610
Vha464I CTTAAG 1 cut(s) 217
VpaK11BI GGWCC 1 cut(s) 340
XapI RAATTY 1 cut(s) 330
ZraI GACGTC 1 cut(s) 641
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.