Prupe.1G377800_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0012084
Physical Location & Seq
Reverse (-)
34172432 .. 34175265
2834 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G377800.1

Sequence Viewer

Length: 1536 bp
ATGGCAGACAAAAGCAAATCGTTTCGCTTTAGGTTCTCTTTGCGTAAGCGTGGTTCTCAGCGTGGTTCTCAAGTAGAACCAGAGCCACGTCCAGTGGCTAAAGCCCAAATCCCCGCCCAGACAACCACCAATGTCCCTGTAGAGCGACCGCCATTTCGGCCTGCAGGAATTGCCCCTGTGAAGTCCTCTCCTTCCCAAGCTCAGGCACCATCAAGAACTGAGCATCCTCCACAATCACCATCTCCATCTCGTGCAAATGAGTCCCGAAAACCATCTGGTTCAACAACTGAAACTCAATTTCAGGTTGAATCTTCTCCACCATCACCATCTCGTGTAGCTTCTCAACCCATCCAAGCAGCATCACAAGTATCATCCCCTCAGACTCAACCACAGCCCACCGTTCCAGAGAGCTCTTGGCTTCCTTCCGTTTCTGCTCAACCCCCATCACCTGCCTCTCAACCAGAACCAAAGGAAGCAATACCTCAACCAAATGCAGAAATCGTTACGTCTGAAACTATTTCCAATGCTTCAAGAGAAATCACCGTTCAAACTCATCCAGCTTTGGCAGTAGCAGAAACAATTGCTTCACCTGAGAAGGTTGATCCTGATACCATTGGTAGAGATCAAAAGCAGCTTCCAGAATCAGAGACAGAGTCAAAAGAGGGGAAGAAAGTAGTGCAAGTGCTGACCAAAGAAGAAAAGACCAACGATCCAGGTTATGGAGAACCAATGCAAGAAACAGTCATTCAATTTCATGCTGCAGTAACAGGCTCAGGAGAGCACACTCAAGGGCCGGTTGGAGTTGCATCGCAAGCAGAGGAACAGCACGAGAAGCAAGAAACTTCAGATAGAACGGAGACTTTTACCACCACCAGCTCCAGTTCGAAACCGATCAAAACTCCAAAAGACAGAAGCACCTCAAAGATGTCTTTTCAAAAGATAGTTTCGTCAACTGCAGAACAAGCTCCCCCACATAAAGAAATCAGAGAAGATGCTCGCAAACTTCATAAGCAGGGCACTGGGAACCAAATGCTTGAAAATCTAGTTAGCGTCATCACCCTAACTGGTGAAAACAAAGGAGCATCAATGCACTCAAGCTCAGAACCAGTAAAAGAAGAAGAATCCGTTCACATACACCGCAGATATAAGAGCAATCCAGATGACAGCCTTGAATCCACTACTGATGAGGTAAACAACAAGGATAGAAGTTTCGAGGACGGGAAGATTCATGATGATCAACAAACGGGTGCATTTATCAACAGCAATGTACAGAGCATCAATAACGCTATTGTGTTCAATAGTTTTGTCACAGAAGGGAACTCCGGTGTTGAGGTGGTTTTTCCTCAAAACCCTGCAGAATCCATCAAGTCAAATGGTAAATCAGAGCCCCTTGAAACACACAACGCTAAATTCACCGTCAGACGGCGATGCCTTAGAGGGCTCTTCTTGGAACCAAGTGACTCAGACCCAGATAACCCTGAAAAGCCTCGACGTCATGGCTGCCGCTATAGTTGTGGGGGAAAGAGAACAGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

512

Amino Acids

55.72

Weight (kDa)

6.28

Isoelectric Point (pI)

68.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012084)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G75260
fragaria_vesca FvH4_2g39641
malus_domestica MD08G1030100.v1.1 MD15G1025500.v1.1
prunus_persica Prupe.1G377800_v2.0.a1
pyrus_communis pycom08g02390 pycom15g02190
rosa_chinensis RchiOBHm_Chr6g0301251
rosa_laevigata RLG00000011267
rosa_multiflora Rmu_sc0013354.1_g000012
rosa_roxburghii Rroxscaffold_171G00441310 Rroxscaffold_7G00167040
rosa_rugosa Rorug06G0302700
rosa_samantha Rh6AG416100 Rh6BG422800 Rh6BG422900 Rh6CG430500 Rh6DG416100
rosa_wichuraiana Rw6G036030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 457
AatII GACGTC 1 cut(s) 1495
Acc36I ACCTGC 1 cut(s) 457
AccB1I GGYRCC 1 cut(s) 205
AccB7I CCANNNNNTGG 1 cut(s) 719
AciI CCGC 4 cut(s) 114, 149, 1138, 1504
AclWI GGATC 2 cut(s) 596, 704
AcsI RAATTY 1 cut(s) 1409
AcuI CTGAAG 1 cut(s) 828
AcyI GRCGYC 1 cut(s) 1492
AfaI GTAC 1 cut(s) 1269
AfiI CCNNNNNNNGG 3 cut(s) 202, 719, 1422
AjiI CACGTC 1 cut(s) 89
AjnI CCWGG 1 cut(s) 712
AloI GAACNNNNNNTCC 2 cut(s) 208, 240
AluBI AGCT 8 cut(s) 200, 338, 411, 560, 634, 876, 965, 1098
AluI AGCT 8 cut(s) 200, 338, 411, 560, 634, 876, 965, 1098
Alw21I GWGCWC 2 cut(s) 413, 783
Alw26I GTCTC 2 cut(s) 641, 851
AlwI GGATC 2 cut(s) 596, 704
AoxI GGCC 2 cut(s) 158, 791
ApeKI GCWGC 4 cut(s) 356, 631, 758, 1500
ApoI RAATTY 1 cut(s) 1409
ArsI GACNNNNNNTTYG 2 cut(s) 138, 170
Asp700I GAANNNNTTC 1 cut(s) 1125
AspS9I GGNCC 1 cut(s) 791
AsuHPI GGTGA 8 cut(s) 228, 315, 438, 532, 579, 1048, 1079, 1405
AsuII TTCGAA 1 cut(s) 884
BaeGI GKGCMC 1 cut(s) 1019
BanI GGYRCC 1 cut(s) 205
BanII GRGCYC 3 cut(s) 413, 1389, 1443
BauI CACGAG 3 cut(s) 249, 330, 827
Bbv12I GWGCWC 2 cut(s) 413, 783
BbvI GCAGC 4 cut(s) 368, 643, 745, 1487
BccI CCATC 9 cut(s) 217, 247, 253, 280, 328, 334, 356, 451, 1370
BceAI ACGGC 1 cut(s) 1439
BciT130I CCWGG 1 cut(s) 714
BclI TGATCA 1 cut(s) 1234
BcoDI GTCTC 2 cut(s) 641, 851
BfaI CTAG 1 cut(s) 1043
BfmI CTRYAG 6 cut(s) 138, 162, 759, 954, 1353, 1507
BfuAI ACCTGC 1 cut(s) 457
BglI GCCNNNNNGGC 1 cut(s) 157
BisI GCNGC 5 cut(s) 357, 632, 759, 1501, 1504
BlsI GCNGC 5 cut(s) 358, 633, 760, 1502, 1505
Bme1390I CCNGG 1 cut(s) 714
BmgBI CACGTC 1 cut(s) 89
BmgT120I GGNCC 1 cut(s) 791
BmiI GGNNCC 3 cut(s) 207, 1025, 1452
BmrFI CCNGG 1 cut(s) 714
BmrI ACTGGG 1 cut(s) 1029
BmsI GCATC 7 cut(s) 232, 368, 815, 982, 1091, 1284, 1418
BmuI ACTGGG 1 cut(s) 1029
BpmI CTGGAG 1 cut(s) 862
Bpu10I CCTNAGC 2 cut(s) 201, 772
Bpu14I TTCGAA 1 cut(s) 884
BpuEI CTTGAG 3 cut(s) 54, 771, 1078
BsaHI GRCGYC 1 cut(s) 1492
BsaWI WCCGGW 1 cut(s) 1322
Bsc4I CCNNNNNNNGG 3 cut(s) 202, 719, 1422
Bse118I RCCGGY 1 cut(s) 793
Bse1I ACTGG 5 cut(s) 92, 879, 1024, 1069, 1106
Bse3DI GCAATG 1 cut(s) 1270
BseBI CCWGG 1 cut(s) 714
BseGI GGATG 4 cut(s) 223, 348, 371, 553
BseLI CCNNNNNNNGG 3 cut(s) 202, 719, 1422
BseMI GCAATG 1 cut(s) 1270
BseMII CTCAG 8 cut(s) 71, 210, 215, 392, 582, 786, 1113, 1476
BseNI ACTGG 5 cut(s) 92, 879, 1024, 1069, 1106
BseSI GKGCMC 1 cut(s) 1019
BseXI GCAGC 4 cut(s) 368, 643, 745, 1487
Bsh1285I CGRYCG 1 cut(s) 149
BshFI GGCC 2 cut(s) 160, 793
BshNI GGYRCC 1 cut(s) 205
BsiEI CGRYCG 1 cut(s) 149
BsiHKAI GWGCWC 2 cut(s) 413, 783
BsiSI CCGG 2 cut(s) 794, 1323
BslFI GGGAC 2 cut(s) 119, 247
BslI CCNNNNNNNGG 3 cut(s) 202, 719, 1422
BsmAI GTCTC 2 cut(s) 641, 851
BsmFI GGGAC 2 cut(s) 119, 247
BsnI GGCC 2 cut(s) 160, 793
Bsp119I TTCGAA 1 cut(s) 884
Bsp1286I GDGCHC 5 cut(s) 413, 783, 1019, 1389, 1443
Bsp1407I TGTACA 1 cut(s) 1267
Bsp143I GATC 5 cut(s) 601, 622, 709, 891, 1234
BspACI CCGC 4 cut(s) 114, 149, 1138, 1504
BspANI GGCC 2 cut(s) 160, 793
BspCNI CTCAG 8 cut(s) 70, 211, 214, 391, 583, 785, 1112, 1475
BspHI TCATGA 1 cut(s) 1228
BspLI GGNNCC 3 cut(s) 207, 1025, 1452
BspMAI CTGCAG 4 cut(s) 166, 763, 958, 1357
BspMI ACCTGC 1 cut(s) 457
BspPI GGATC 2 cut(s) 596, 704
BspQI GCTCTTC 1 cut(s) 1448
BspT104I TTCGAA 1 cut(s) 884
BspT107I GGYRCC 1 cut(s) 205
BsrDI GCAATG 1 cut(s) 1270
BsrFI RCCGGY 1 cut(s) 793
BsrGI TGTACA 1 cut(s) 1267
BsrI ACTGG 5 cut(s) 92, 879, 1024, 1069, 1106
BssAI RCCGGY 1 cut(s) 793
BssMI GATC 5 cut(s) 601, 622, 709, 891, 1234
BssNI GRCGYC 1 cut(s) 1492
BssSI CACGAG 3 cut(s) 249, 330, 827
Bst2BI CACGAG 3 cut(s) 249, 330, 827
Bst2UI CCWGG 1 cut(s) 714
Bst4CI ACNGT 4 cut(s) 400, 544, 742, 1417
Bst6I CTCTTC 1 cut(s) 1448
BstACI GRCGYC 1 cut(s) 1492
BstAPI GCANNNNNTGC 1 cut(s) 170
BstAUI TGTACA 1 cut(s) 1267
BstBI TTCGAA 1 cut(s) 884
BstC8I GCNNGC 3 cut(s) 162, 813, 997
BstDEI CTNAG 9 cut(s) 57, 201, 219, 378, 591, 772, 1099, 1433, 1462
BstF5I GGATG 4 cut(s) 223, 348, 371, 553
BstKTI GATC 5 cut(s) 604, 625, 712, 894, 1237
BstMAI GTCTC 2 cut(s) 641, 851
BstMBI GATC 5 cut(s) 601, 622, 709, 891, 1234
BstMCI CGRYCG 1 cut(s) 149
BstMWI GCNNNNNNNGC 5 cut(s) 157, 170, 812, 832, 962
BstNI CCWGG 1 cut(s) 714
BstSCI CCNGG 1 cut(s) 712
BstSFI CTRYAG 6 cut(s) 138, 162, 759, 954, 1353, 1507
BstSLI GKGCMC 1 cut(s) 1019
BstV1I GCAGC 4 cut(s) 368, 643, 745, 1487
BsuRI GGCC 2 cut(s) 160, 793
BtgZI GCGATG 2 cut(s) 792, 1441
BtrI CACGTC 1 cut(s) 89
BtsCI GGATG 4 cut(s) 223, 348, 371, 553
BtsIMutI CAGTG 2 cut(s) 99, 1017
BveI ACCTGC 1 cut(s) 457
Cac8I GCNNGC 3 cut(s) 162, 813, 997
CciI TCATGA 1 cut(s) 1228
Cfr10I RCCGGY 1 cut(s) 793
Cfr13I GGNCC 1 cut(s) 791
CseI GACGC 1 cut(s) 1039
Csp6I GTAC 1 cut(s) 1268
CviAII CATG 3 cut(s) 755, 1229, 1496
CviQI GTAC 1 cut(s) 1268
DdeI CTNAG 9 cut(s) 57, 201, 219, 378, 591, 772, 1099, 1433, 1462
DpnI GATC 5 cut(s) 603, 624, 711, 893, 1236
DpnII GATC 5 cut(s) 601, 622, 709, 891, 1234
Eam1104I CTCTTC 1 cut(s) 1448
EarI CTCTTC 1 cut(s) 1448
Ecl136II GAGCTC 1 cut(s) 411
Eco24I GRGCYC 3 cut(s) 413, 1389, 1443
Eco53kI GAGCTC 1 cut(s) 411
Eco57I CTGAAG 1 cut(s) 828
EcoICRI GAGCTC 1 cut(s) 411
EcoRII CCWGG 1 cut(s) 712
EcoT38I GRGCYC 3 cut(s) 413, 1389, 1443
FaeI CATG 3 cut(s) 758, 1232, 1499
FaiI YATR 9 cut(s) 720, 756, 975, 1008, 1133, 1146, 1230, 1497, 1509
FaqI GGGAC 2 cut(s) 119, 247
FatI CATG 3 cut(s) 754, 1228, 1495
FauI CCCGC 1 cut(s) 121
FbaI TGATCA 1 cut(s) 1234
Fnu4HI GCNGC 5 cut(s) 357, 632, 759, 1501, 1504
FokI GGATG 4 cut(s) 210, 335, 358, 540
FriOI GRGCYC 3 cut(s) 413, 1389, 1443
Fsp4HI GCNGC 5 cut(s) 357, 632, 759, 1501, 1504
FspBI CTAG 1 cut(s) 1043
GluI GCNGC 5 cut(s) 357, 632, 759, 1501, 1504
GsuI CTGGAG 1 cut(s) 862
HaeIII GGCC 2 cut(s) 160, 793
HapII CCGG 2 cut(s) 794, 1323
HgaI GACGC 1 cut(s) 1039
Hin1I GRCGYC 1 cut(s) 1492
Hin1II CATG 3 cut(s) 758, 1232, 1499
HincII GTYRAC 1 cut(s) 951
HindII GTYRAC 1 cut(s) 951
HpaII CCGG 2 cut(s) 794, 1323
HphI GGTGA 8 cut(s) 228, 315, 438, 532, 579, 1048, 1079, 1405
Hpy166II GTNNAC 3 cut(s) 951, 1129, 1192
Hpy188I TCNGA 9 cut(s) 381, 511, 646, 847, 986, 1102, 1384, 1421, 1465
Hpy188III TCNNGA 9 cut(s) 213, 264, 404, 531, 605, 638, 774, 1157, 1229
Hpy8I GTNNAC 3 cut(s) 951, 1129, 1192
Hpy99I CGWCG 1 cut(s) 1494
HpyAV CCTTC 4 cut(s) 201, 432, 589, 1307
HpyCH4III ACNGT 4 cut(s) 400, 544, 742, 1417
HpyCH4IV ACGT 3 cut(s) 88, 506, 1492
HpyF10VI GCNNNNNNNGC 5 cut(s) 157, 170, 812, 832, 962
HpyF3I CTNAG 9 cut(s) 57, 201, 219, 378, 591, 772, 1099, 1433, 1462
HpySE526I ACGT 3 cut(s) 88, 506, 1492
Hsp92I GRCGYC 1 cut(s) 1492
Hsp92II CATG 3 cut(s) 758, 1232, 1499
Ksp22I TGATCA 1 cut(s) 1234
Kzo9I GATC 5 cut(s) 601, 622, 709, 891, 1234
LguI GCTCTTC 1 cut(s) 1448
LmnI GCTCC 3 cut(s) 881, 970, 1079
Lsp1109I GCAGC 4 cut(s) 368, 643, 745, 1487
LweI GCATC 7 cut(s) 232, 368, 815, 982, 1091, 1284, 1418
MaeI CTAG 1 cut(s) 1043
MaeII ACGT 3 cut(s) 88, 506, 1492
MaeIII GTNAC 4 cut(s) 502, 763, 1306, 1457
MalI GATC 5 cut(s) 603, 624, 711, 893, 1236
MboI GATC 5 cut(s) 601, 622, 709, 891, 1234
MboII GAAGA 8 cut(s) 303, 679, 707, 1001, 1127, 1130, 1234, 1435
MfeI CAATTG 1 cut(s) 579
MhlI GDGCHC 5 cut(s) 413, 783, 1019, 1389, 1443
MluCI AATT 5 cut(s) 168, 296, 579, 749, 1409
MlyI GAGTC 4 cut(s) 269, 376, 662, 1454
MmeI TCCRAC 1 cut(s) 778
MroXI GAANNNNTTC 1 cut(s) 1125
MspI CCGG 2 cut(s) 794, 1323
MspR9I CCNGG 1 cut(s) 714
MunI CAATTG 1 cut(s) 579
MvaI CCWGG 1 cut(s) 714
MwoI GCNNNNNNNGC 5 cut(s) 157, 170, 812, 832, 962
NdeII GATC 5 cut(s) 601, 622, 709, 891, 1234
NlaIII CATG 3 cut(s) 758, 1232, 1499
NlaIV GGNNCC 3 cut(s) 207, 1025, 1452
NmuCI GTSAC 2 cut(s) 1306, 1457
NspV TTCGAA 1 cut(s) 884
PagI TCATGA 1 cut(s) 1228
PaqCI CACCTGC 1 cut(s) 457
PciSI GCTCTTC 1 cut(s) 1448
PdmI GAANNNNTTC 1 cut(s) 1125
PfeI GAWTC 6 cut(s) 308, 641, 1121, 1172, 1225, 1358
PflFI GACNNNGTC 1 cut(s) 652
PflMI CCANNNNNTGG 1 cut(s) 719
PkrI GCNGC 5 cut(s) 358, 633, 760, 1502, 1505
PleI GAGTC 4 cut(s) 268, 376, 661, 1454
PpsI GAGTC 4 cut(s) 268, 376, 661, 1454
Psp124BI GAGCTC 1 cut(s) 413
Psp6I CCWGG 1 cut(s) 712
PspGI CCWGG 1 cut(s) 712
PspN4I GGNNCC 3 cut(s) 207, 1025, 1452
PspPI GGNCC 1 cut(s) 791
PsrI GAACNNNNNNTAC 2 cut(s) 37, 69
PstI CTGCAG 4 cut(s) 166, 763, 958, 1357
PsyI GACNNNGTC 1 cut(s) 652
RsaI GTAC 1 cut(s) 1269
RsaNI GTAC 1 cut(s) 1268
SacI GAGCTC 1 cut(s) 413
SapI GCTCTTC 1 cut(s) 1448
SatI GCNGC 5 cut(s) 357, 632, 759, 1501, 1504
Sau3AI GATC 5 cut(s) 601, 622, 709, 891, 1234
Sau96I GGNCC 1 cut(s) 791
SbfI CCTGCAGG 1 cut(s) 166
SchI GAGTC 4 cut(s) 269, 376, 662, 1454
ScrFI CCNGG 1 cut(s) 714
SdaI CCTGCAGG 1 cut(s) 166
SduI GDGCHC 5 cut(s) 413, 783, 1019, 1389, 1443
SfaNI GCATC 7 cut(s) 232, 368, 815, 982, 1091, 1284, 1418
SfcI CTRYAG 6 cut(s) 138, 162, 759, 954, 1353, 1507
SfuI TTCGAA 1 cut(s) 884
SmlI CTYRAG 3 cut(s) 69, 786, 1093
SmoI CTYRAG 3 cut(s) 69, 786, 1093
Sse8387I CCTGCAGG 1 cut(s) 166
Sse9I AATT 5 cut(s) 168, 296, 579, 749, 1409
SsiI CCGC 4 cut(s) 114, 149, 1138, 1504
SspMI CTAG 1 cut(s) 1043
SstI GAGCTC 1 cut(s) 413
StyD4I CCNGG 1 cut(s) 712
TaaI ACNGT 4 cut(s) 400, 544, 742, 1417
TaiI ACGT 3 cut(s) 91, 509, 1495
TaqI TCGA 3 cut(s) 884, 1212, 1489
TasI AATT 5 cut(s) 168, 296, 579, 749, 1409
TatI WGTACW 1 cut(s) 1267
TauI GCSGC 1 cut(s) 1506
TfiI GAWTC 6 cut(s) 308, 641, 1121, 1172, 1225, 1358
TscAI CASTG 2 cut(s) 99, 1024
TseFI GTSAC 2 cut(s) 1306, 1457
TseI GCWGC 4 cut(s) 356, 631, 758, 1500
Tsp45I GTSAC 2 cut(s) 1306, 1457
TspDTI ATGAA 3 cut(s) 743, 995, 1217
TspGWI ACGGA 3 cut(s) 415, 869, 1114
TspRI CASTG 2 cut(s) 99, 1024
Tth111I GACNNNGTC 1 cut(s) 652
Van91I CCANNNNNTGG 1 cut(s) 719
XapI RAATTY 1 cut(s) 1409
XcmI CCANNNNNNNNNTGG 1 cut(s) 411
XmnI GAANNNNTTC 1 cut(s) 1125
XspI CTAG 1 cut(s) 1043
ZraI GACGTC 1 cut(s) 1493
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.