RLG00000011267

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0012084
Physical Location & Seq
Reverse (-)
8091935 .. 8093644
1710 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011267

Sequence Viewer

Length: 1710 bp
ATGGCAGACAAAAGGCTATCCTTTCGCTTCCGGTTCCCTTGGCGTAATAGTCCCCGTTCTAAAGAAGAACCAGAGCCACGCCCAACACCTAAAACCCAAAACCCTGCCCAGTCAACCACCACAGTAGCCCCTGAGAGGCCGCCATTTCGGCCAGCAGGAAAAACTCCGGTAAAGGGCTCTCCTTTGCAAGCTCGGGGGCCACAAAAAACTGATCTTCCACCATCTCGTGCAGCCAGTGAGTCCCCAAAGTCTCAATCCTCGTCTCGTTTATCTCCATCAAAGAACTCACATCCCACCACTCAACAAAGCTCTCCCCCATCAGCTACCTCTTCTCAATCTCAACTATTACAAGAGGAAGCAATATCTCAGCCACAGAAACCTCGACGAAAAATACAAATCATATCTGAAACTGATTCCAGTGCTGAGGGCAGTACACCTAGAGAAACAACCTCTCATACTCATGAAACTTCCCTTAAGGGTATAAAGGTATTTGCTAAATCAGATTCTGATACCCTCAATGGAGATCACAAGCAGCTTTCGGAATCAGAGGCAGAGTCAAAAGAGCACAAAGAAGCAGAGAAAGTAGTGCAGGTACCGGCAGTAGAAGAAAAGACCAATGATCCAGGTTACACAGAACCATTGCAAGAAAGGGTCACTCAACTTCCTGCTGCAGCAAAAGACTCGGGAAATCAGGCCAAAGACCCACTTGGAGATGCATTGCAAGCAGACCAGCGAAAGGAGAAGCAAGAAAAGGTCACTGAACTTCATGCTGGAGCAACAGACCCAGGAAATCACACCAAAGACCCACTTGGAGTTGCATTGCAAGCAGATCAGCAACACGAGAAGCAAGAAAGGGTCGCTGAACTTCATGCTGCAGCAACAGACTCAGGAAATCACACCAAAGACCAACTTGGAGTTGCATCGCAAGCAGATCAGCAACACGAGAAGCAAGAAAGGGTTGCTGAACTTCATACTGCAGCAACAGACGCAGGAAATCACACCAAAGACCAACTTGGAGTCGCATCGCAAGCAGATCAGCAACCCGAGAAGCAAGAAAGGGTCGCTGAACTTCATGCTGCAGCAACAGACTCAGGAAATCACACCAAAGACCCACCTGGAGCTGCATTGCAAGCAGATCAGCAACAGGAGAAGAAAGAAAATTTTGACAGAAAGGAGATGCTGGCCACCACCAGCTCTGATAAGAAACCTATCAAAACTGAGAGGAGCTCCTCAAGGGTGTATATTCGAAATATGGTTGCACCAACTGGGGAACGACCTCCCCCAGATAAAGAAGTCAGGGAAGATGTTTCCAAGGTTGATAAGCTGGCCATCGGGCAGCAAATGCTTGATAAGCCAGTTGGTGTTGTGACCTTAACTGGCAAAAACAGAGGAGCAGTAATGCTCTTAAGCTCAGAACCAGAAAAACGAGAAGAACCAGTCCACATACGCCGCGGTTACAAGCTCAATCCAGATGATAATGAAGCTACTACTGATGGAGAGGTAAGCAATGAGGAAGAAATTTTCGAGGACCAGATATTCAAAGGAGATCAACAATACATCAACAGCAATGTCCAGAGCATCAATAACTCTATTGTGTGCGGTAGTTCTGTCACGGAAAGGAATCCAGGTGTTGCTGTTTTTTCTTCAAACCCACCAGAATCCATCGATTCAAATAAAGAATCAGACTCCCTCCAAACACACAAGGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

570

Amino Acids

62.24

Weight (kDa)

5.8

Isoelectric Point (pI)

56.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012084)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G75260
fragaria_vesca FvH4_2g39641
malus_domestica MD08G1030100.v1.1 MD15G1025500.v1.1
prunus_persica Prupe.1G377800_v2.0.a1
pyrus_communis pycom08g02390 pycom15g02190
rosa_chinensis RchiOBHm_Chr6g0301251
rosa_laevigata RLG00000011267
rosa_multiflora Rmu_sc0013354.1_g000012
rosa_roxburghii Rroxscaffold_171G00441310 Rroxscaffold_7G00167040
rosa_rugosa Rorug06G0302700
rosa_samantha Rh6AG416100 Rh6BG422800 Rh6BG422900 Rh6CG430500 Rh6DG416100
rosa_wichuraiana Rw6G036030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 580
Acc65I GGTACC 1 cut(s) 592
AccB1I GGYRCC 1 cut(s) 592
AccII CGCG 1 cut(s) 1452
AciI CCGC 4 cut(s) 140, 1450, 1452, 1599
AclWI GGATC 1 cut(s) 614
AcoI YGGCCR 3 cut(s) 149, 1182, 1326
AcsI RAATTY 2 cut(s) 1159, 1518
AfaI GTAC 2 cut(s) 433, 594
AfiI CCNNNNNNNGG 3 cut(s) 135, 173, 736
AflII CTTAAG 2 cut(s) 473, 1405
AgsI TTSAA 3 cut(s) 1540, 1647, 1671
AjnI CCWGG 4 cut(s) 622, 784, 1114, 1624
Alw21I GWGCWC 2 cut(s) 567, 1229
Alw26I GTCTC 2 cut(s) 255, 267
AlwI GGATC 1 cut(s) 614
AlwNI CAGNNNCTG 1 cut(s) 506
Ama87I CYCGRG 3 cut(s) 192, 682, 1043
AoxI GGCC 6 cut(s) 137, 149, 197, 693, 1182, 1326
ApoI RAATTY 2 cut(s) 1159, 1518
Asp718I GGTACC 1 cut(s) 592
AspS9I GGNCC 2 cut(s) 197, 1528
AsuII TTCGAA 1 cut(s) 1246
AvaI CYCGRG 3 cut(s) 192, 682, 1043
AvaII GGWCC 1 cut(s) 1528
BalI TGGCCA 2 cut(s) 1184, 1328
BanI GGYRCC 1 cut(s) 592
BanII GRGCYC 2 cut(s) 179, 1229
BauI CACGAG 3 cut(s) 225, 839, 941
Bbv12I GWGCWC 2 cut(s) 567, 1229
BbvCI CCTCAGC 1 cut(s) 423
BccI CCATC 6 cut(s) 229, 283, 325, 1337, 1487, 1670
BcgI CGANNNNNNTGC 2 cut(s) 663, 697
BciT130I CCWGG 4 cut(s) 624, 786, 1116, 1626
BcoDI GTCTC 2 cut(s) 255, 267
BfaI CTAG 1 cut(s) 438
BfmI CTRYAG 4 cut(s) 669, 873, 975, 1077
BfrI CTTAAG 2 cut(s) 473, 1405
BfuAI ACCTGC 1 cut(s) 580
BglI GCCNNNNNGGC 1 cut(s) 148
Bme1390I CCNGG 4 cut(s) 624, 786, 1116, 1626
Bme18I GGWCC 1 cut(s) 1528
BmeT110I CYCGRG 3 cut(s) 192, 682, 1043
BmgT120I GGNCC 2 cut(s) 197, 1528
BmiI GGNNCC 3 cut(s) 35, 198, 594
BmrFI CCNGG 4 cut(s) 624, 786, 1116, 1626
BmrI ACTGGG 2 cut(s) 103, 1275
BmsI GCATC 5 cut(s) 703, 929, 1031, 1167, 1587
BmuI ACTGGG 2 cut(s) 103, 1275
BplI GAGNNNNNCTC 2 cut(s) 1211, 1243
BpmI CTGGAG 2 cut(s) 792, 1137
Bpu10I CCTNAGC 1 cut(s) 423
Bpu14I TTCGAA 1 cut(s) 1246
BpuEI CTTGAG 1 cut(s) 1216
Bsa29I ATCGAT 1 cut(s) 1665
BsaJI CCNNGG 4 cut(s) 38, 784, 1311, 1450
BsaWI WCCGGW 2 cut(s) 30, 166
Bsc4I CCNNNNNNNGG 3 cut(s) 135, 173, 736
Bse118I RCCGGY 1 cut(s) 595
Bse1I ACTGG 7 cut(s) 109, 234, 417, 1270, 1355, 1381, 1436
Bse3DI GCAATG 6 cut(s) 638, 716, 818, 1124, 1513, 1573
BseBI CCWGG 4 cut(s) 624, 786, 1116, 1626
BseCI ATCGAT 1 cut(s) 1665
BseDI CCNNGG 4 cut(s) 38, 784, 1311, 1450
BseGI GGATG 1 cut(s) 289
BseLI CCNNNNNNNGG 3 cut(s) 135, 173, 736
BseMI GCAATG 6 cut(s) 638, 716, 818, 1124, 1513, 1573
BseMII CTCAG 7 cut(s) 123, 380, 414, 900, 1104, 1209, 1425
BseNI ACTGG 7 cut(s) 109, 234, 417, 1270, 1355, 1381, 1436
BseRI GAGGAG 3 cut(s) 1219, 1237, 1404
BsgI GTGCAG 2 cut(s) 249, 608
Bsh1236I CGCG 1 cut(s) 1452
BshFI GGCC 6 cut(s) 139, 151, 199, 695, 1184, 1328
BshNI GGYRCC 1 cut(s) 592
BshVI ATCGAT 1 cut(s) 1665
BsiHKAI GWGCWC 2 cut(s) 567, 1229
BsiHKCI CYCGRG 3 cut(s) 192, 682, 1043
BsiSI CCGG 3 cut(s) 31, 167, 596
BslFI GGGAC 2 cut(s) 36, 226
BslI CCNNNNNNNGG 3 cut(s) 135, 173, 736
BsmAI GTCTC 2 cut(s) 255, 267
BsmBI CGTCTC 1 cut(s) 267
BsmFI GGGAC 2 cut(s) 36, 226
BsnI GGCC 6 cut(s) 139, 151, 199, 695, 1184, 1328
BsoBI CYCGRG 3 cut(s) 192, 682, 1043
Bsp119I TTCGAA 1 cut(s) 1246
Bsp1286I GDGCHC 3 cut(s) 179, 567, 1229
Bsp143I GATC 8 cut(s) 211, 523, 619, 829, 931, 1033, 1135, 1546
BspACI CCGC 4 cut(s) 140, 1450, 1452, 1599
BspANI GGCC 6 cut(s) 139, 151, 199, 695, 1184, 1328
BspCNI CTCAG 7 cut(s) 124, 379, 415, 899, 1103, 1210, 1424
BspDI ATCGAT 1 cut(s) 1665
BspFNI CGCG 1 cut(s) 1452
BspHI TCATGA 1 cut(s) 460
BspLI GGNNCC 3 cut(s) 35, 198, 594
BspMAI CTGCAG 4 cut(s) 673, 877, 979, 1081
BspMI ACCTGC 1 cut(s) 580
BspPI GGATC 1 cut(s) 614
BspT104I TTCGAA 1 cut(s) 1246
BspT107I GGYRCC 1 cut(s) 592
BspTI CTTAAG 2 cut(s) 473, 1405
BsrDI GCAATG 6 cut(s) 638, 716, 818, 1124, 1513, 1573
BsrFI RCCGGY 1 cut(s) 595
BsrI ACTGG 7 cut(s) 109, 234, 417, 1270, 1355, 1381, 1436
BssAI RCCGGY 1 cut(s) 595
BssECI CCNNGG 4 cut(s) 38, 784, 1311, 1450
BssMI GATC 8 cut(s) 211, 523, 619, 829, 931, 1033, 1135, 1546
BssSI CACGAG 3 cut(s) 225, 839, 941
BssT1I CCWWGG 2 cut(s) 38, 1311
Bst2BI CACGAG 3 cut(s) 225, 839, 941
Bst2UI CCWGG 4 cut(s) 624, 786, 1116, 1626
Bst4CI ACNGT 1 cut(s) 124
Bst6I CTCTTC 1 cut(s) 334
BstAFI CTTAAG 2 cut(s) 473, 1405
BstAPI GCANNNNNTGC 1 cut(s) 1342
BstBI TTCGAA 1 cut(s) 1246
BstC8I GCNNGC 9 cut(s) 153, 189, 723, 825, 927, 1029, 1131, 1182, 1326
BstDEI CTNAG 7 cut(s) 132, 366, 423, 886, 1090, 1218, 1411
BstDSI CCRYGG 1 cut(s) 1450
BstF5I GGATG 1 cut(s) 289
BstFNI CGCG 1 cut(s) 1452
BstKTI GATC 8 cut(s) 214, 526, 622, 832, 934, 1036, 1138, 1549
BstMAI GTCTC 2 cut(s) 255, 267
BstMBI GATC 8 cut(s) 211, 523, 619, 829, 931, 1033, 1135, 1546
BstMWI GCNNNNNNNGC 9 cut(s) 148, 722, 824, 926, 986, 1028, 1130, 1342, 1351
BstNI CCWGG 4 cut(s) 624, 786, 1116, 1626
BstSCI CCNGG 4 cut(s) 622, 784, 1114, 1624
BstSFI CTRYAG 4 cut(s) 669, 873, 975, 1077
BstUI CGCG 1 cut(s) 1452
Bsu15I ATCGAT 1 cut(s) 1665
BsuRI GGCC 6 cut(s) 139, 151, 199, 695, 1184, 1328
BsuTUI ATCGAT 1 cut(s) 1665
BtgI CCRYGG 1 cut(s) 1450
BtgZI GCGATG 2 cut(s) 906, 1008
BtsCI GGATG 1 cut(s) 289
BtsIMutI CAGTG 3 cut(s) 241, 424, 756
BveI ACCTGC 1 cut(s) 580
Cac8I GCNNGC 9 cut(s) 153, 189, 723, 825, 927, 1029, 1131, 1182, 1326
CaiI CAGNNNCTG 1 cut(s) 506
CciI TCATGA 1 cut(s) 460
Cfr10I RCCGGY 1 cut(s) 595
Cfr13I GGNCC 2 cut(s) 197, 1528
Cfr42I CCGCGG 1 cut(s) 1453
ClaI ATCGAT 1 cut(s) 1665
CseI GACGC 1 cut(s) 995
Csp6I GTAC 2 cut(s) 432, 593
CviAII CATG 4 cut(s) 461, 767, 869, 1073
CviQI GTAC 2 cut(s) 432, 593
DdeI CTNAG 7 cut(s) 132, 366, 423, 886, 1090, 1218, 1411
DpnI GATC 8 cut(s) 213, 525, 621, 831, 933, 1035, 1137, 1548
DpnII GATC 8 cut(s) 211, 523, 619, 829, 931, 1033, 1135, 1546
EaeI YGGCCR 3 cut(s) 149, 1182, 1326
Eam1104I CTCTTC 1 cut(s) 334
EarI CTCTTC 1 cut(s) 334
Ecl136II GAGCTC 1 cut(s) 1227
Eco130I CCWWGG 2 cut(s) 38, 1311
Eco24I GRGCYC 2 cut(s) 179, 1229
Eco47I GGWCC 1 cut(s) 1528
Eco53kI GAGCTC 1 cut(s) 1227
Eco88I CYCGRG 3 cut(s) 192, 682, 1043
EcoICRI GAGCTC 1 cut(s) 1227
EcoRII CCWGG 4 cut(s) 622, 784, 1114, 1624
EcoT14I CCWWGG 2 cut(s) 38, 1311
EcoT22I ATGCAT 1 cut(s) 718
EcoT38I GRGCYC 2 cut(s) 179, 1229
ErhI CCWWGG 2 cut(s) 38, 1311
Esp3I CGTCTC 1 cut(s) 267
FaeI CATG 4 cut(s) 464, 770, 872, 1076
FalI AAGNNNNNCTT 8 cut(s) 690, 722, 792, 824, 894, 926, 996, 1028
FaqI GGGAC 2 cut(s) 36, 226
FatI CATG 4 cut(s) 460, 766, 868, 1072
FokI GGATG 1 cut(s) 276
FriOI GRGCYC 2 cut(s) 179, 1229
FspBI CTAG 1 cut(s) 438
GsuI CTGGAG 2 cut(s) 792, 1137
HaeIII GGCC 6 cut(s) 139, 151, 199, 695, 1184, 1328
HapII CCGG 3 cut(s) 31, 167, 596
HgaI GACGC 1 cut(s) 995
Hin1II CATG 4 cut(s) 464, 770, 872, 1076
HincII GTYRAC 1 cut(s) 114
HindII GTYRAC 1 cut(s) 114
HpaII CCGG 3 cut(s) 31, 167, 596
Hpy166II GTNNAC 3 cut(s) 114, 434, 1441
Hpy188I TCNGA 8 cut(s) 406, 502, 508, 541, 547, 1198, 1414, 1684
Hpy188III TCNNGA 6 cut(s) 461, 684, 888, 1092, 1469, 1573
Hpy8I GTNNAC 3 cut(s) 114, 434, 1441
Hpy99I CGWCG 1 cut(s) 387
HpyCH4III ACNGT 1 cut(s) 124
HpyF10VI GCNNNNNNNGC 9 cut(s) 148, 722, 824, 926, 986, 1028, 1130, 1342, 1351
HpyF3I CTNAG 7 cut(s) 132, 366, 423, 886, 1090, 1218, 1411
Hsp92II CATG 4 cut(s) 464, 770, 872, 1076
KpnI GGTACC 1 cut(s) 596
KspI CCGCGG 1 cut(s) 1453
Kzo9I GATC 8 cut(s) 211, 523, 619, 829, 931, 1033, 1135, 1546
LmnI GCTCC 5 cut(s) 773, 1118, 1224, 1232, 1391
LweI GCATC 5 cut(s) 703, 929, 1031, 1167, 1587
MaeI CTAG 1 cut(s) 438
MaeIII GTNAC 6 cut(s) 626, 652, 754, 1366, 1454, 1609
MalI GATC 8 cut(s) 213, 525, 621, 831, 933, 1035, 1137, 1548
MboI GATC 8 cut(s) 211, 523, 619, 829, 931, 1033, 1135, 1546
MboII GAAGA 9 cut(s) 77, 206, 321, 617, 1162, 1313, 1442, 1526, 1635
MhlI GDGCHC 3 cut(s) 179, 567, 1229
MlsI TGGCCA 2 cut(s) 1184, 1328
MluCI AATT 2 cut(s) 1159, 1518
MluNI TGGCCA 2 cut(s) 1184, 1328
MlyI GAGTC 7 cut(s) 248, 563, 674, 878, 1026, 1082, 1679
Mox20I TGGCCA 2 cut(s) 1184, 1328
Mph1103I ATGCAT 1 cut(s) 718
MscI TGGCCA 2 cut(s) 1184, 1328
MseI TTAA 4 cut(s) 474, 1373, 1406, 1708
MslI CAYNNNNRTG 1 cut(s) 459
Msp20I TGGCCA 2 cut(s) 1184, 1328
MspA1I CMGCKG 1 cut(s) 1452
MspCI CTTAAG 2 cut(s) 473, 1405
MspI CCGG 3 cut(s) 31, 167, 596
MspR9I CCNGG 4 cut(s) 624, 786, 1116, 1626
MvaI CCWGG 4 cut(s) 624, 786, 1116, 1626
MvnI CGCG 1 cut(s) 1452
MwoI GCNNNNNNNGC 9 cut(s) 148, 722, 824, 926, 986, 1028, 1130, 1342, 1351
NdeII GATC 8 cut(s) 211, 523, 619, 829, 931, 1033, 1135, 1546
NlaIII CATG 4 cut(s) 464, 770, 872, 1076
NlaIV GGNNCC 3 cut(s) 35, 198, 594
NmuCI GTSAC 4 cut(s) 652, 754, 1366, 1609
NsiI ATGCAT 1 cut(s) 718
NspV TTCGAA 1 cut(s) 1246
PagI TCATGA 1 cut(s) 460
PfeI GAWTC 7 cut(s) 413, 503, 542, 1621, 1658, 1667, 1679
PleI GAGTC 7 cut(s) 247, 562, 674, 878, 1025, 1082, 1679
PpsI GAGTC 7 cut(s) 247, 562, 674, 878, 1025, 1082, 1679
Psp124BI GAGCTC 1 cut(s) 1229
Psp6I CCWGG 4 cut(s) 622, 784, 1114, 1624
PspGI CCWGG 4 cut(s) 622, 784, 1114, 1624
PspN4I GGNNCC 3 cut(s) 35, 198, 594
PspPI GGNCC 2 cut(s) 197, 1528
PstI CTGCAG 4 cut(s) 673, 877, 979, 1081
PstNI CAGNNNCTG 1 cut(s) 506
RsaI GTAC 2 cut(s) 433, 594
RsaNI GTAC 2 cut(s) 432, 593
RseI CAYNNNNRTG 1 cut(s) 459
SacI GAGCTC 1 cut(s) 1229
SacII CCGCGG 1 cut(s) 1453
SaqAI TTAA 4 cut(s) 474, 1373, 1406, 1708
Sau3AI GATC 8 cut(s) 211, 523, 619, 829, 931, 1033, 1135, 1546
Sau96I GGNCC 2 cut(s) 197, 1528
SchI GAGTC 7 cut(s) 248, 563, 674, 878, 1026, 1082, 1679
ScrFI CCNGG 4 cut(s) 624, 786, 1116, 1626
SduI GDGCHC 3 cut(s) 179, 567, 1229
SfaNI GCATC 5 cut(s) 703, 929, 1031, 1167, 1587
SfcI CTRYAG 4 cut(s) 669, 873, 975, 1077
Sfr303I CCGCGG 1 cut(s) 1453
SfuI TTCGAA 1 cut(s) 1246
SgrBI CCGCGG 1 cut(s) 1453
SinI GGWCC 1 cut(s) 1528
SmiMI CAYNNNNRTG 1 cut(s) 459
SmlI CTYRAG 3 cut(s) 473, 1231, 1405
SmoI CTYRAG 3 cut(s) 473, 1231, 1405
Sse9I AATT 2 cut(s) 1159, 1518
SsiI CCGC 4 cut(s) 140, 1450, 1452, 1599
SspMI CTAG 1 cut(s) 438
SstI GAGCTC 1 cut(s) 1229
StyD4I CCNGG 4 cut(s) 622, 784, 1114, 1624
StyI CCWWGG 2 cut(s) 38, 1311
TaaI ACNGT 1 cut(s) 124
TaqI TCGA 4 cut(s) 382, 1246, 1524, 1665
TasI AATT 2 cut(s) 1159, 1518
TatI WGTACW 1 cut(s) 431
TauI GCSGC 2 cut(s) 142, 1452
TfiI GAWTC 7 cut(s) 413, 503, 542, 1621, 1658, 1667, 1679
Tru1I TTAA 4 cut(s) 474, 1373, 1406, 1708
Tru9I TTAA 4 cut(s) 474, 1373, 1406, 1708
TscAI CASTG 3 cut(s) 241, 424, 763
TseFI GTSAC 4 cut(s) 652, 754, 1366, 1609
Tsp45I GTSAC 4 cut(s) 652, 754, 1366, 1609
TspDTI ATGAA 6 cut(s) 477, 755, 857, 959, 1061, 1494
TspGWI ACGGA 1 cut(s) 1628
TspRI CASTG 3 cut(s) 241, 424, 763
Vha464I CTTAAG 2 cut(s) 473, 1405
VpaK11BI GGWCC 1 cut(s) 1528
XapI RAATTY 2 cut(s) 1159, 1518
XspI CTAG 1 cut(s) 438
Zsp2I ATGCAT 1 cut(s) 718
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.