Rh6BG422900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0012084
Physical Location & Seq
Forward (+)
64552125 .. 64553396
1272 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG422900.1

Sequence Viewer

Length: 1272 bp
ATGATCCAGGTTACACAGAACCATTGCAAGAAAGGGTCGCTCAACTTCCTGCTGCAGCAAAAGACTCGGGAAATCAGGCCAAAGACCCACTTGGAGATGCATTGCAAGCAGACCAGCGAAAGGAGAAGCAAGAAAAGGTCACTGAACATCATGCTGGAGCAACAGACCCAGGAAATCACACCAGACACACTTGGAGTTGCATTGCAAGCAGATCAGCAACACGAGAAGCAAGAAAGGGTTGCTGAACTTCATGCTGCAGCAACAGACTCAGGACATCACACCAAAGACCAACTTGGAGTTGCATCGCAAGCAGATCAGCAACACGAGAAGCAAGAAAGGGTCGCTGAACTTCATACTGCAGCAACAGACTCAGGAAATCACACCAAAGACCAACTTGGAGTCGCATCGCAAGCAGATCAGCAACACGAGAAGCAAGAAAGGGTCGCTGAACTTCATGCTGCAGCAACAGACTCAGGAAATCACACCAAAGACCCACCTGGAGCTGCATTGCAAGCAGATCAGCAACAGGAGAAGAAAGAAAATTTTGACAGAAAGGAGATGCTGGCCACCACCAGCTCTGATAAGAAACCTATCAAAACTGAGAGGAGCTCCTCAAGGGTGTATATTCGAAAGATGGTTGCATCGACTGGGGAACGACCTCCCCCAAATAAAGAAATCAGGGAAGATGTTTCCAAGGTTGATAAGCTGGCCATCGGCCAGCAAATGCTTGATAAGCCAGTTGGTGTTGTGACCTTAACTGGCAAAAACAGAGGAGCAGTAATGCTCTTAAGCTCAGAACCAGAAAAACGAGAAGAACCAGTCCACATACGCCGCGGTTACAAGCTCAATCCAGATGATAATGAAGCTACTACTGATGGAGAGGTAAGCAATGAGGAAGAAATTTTTGAGGACCAGATATTCGAAGGAGATCAACAATACATCAACAGCAATGTCCAGAGCATCAATAACTCTATTGTGTGCAGTAGTTCTGTCACGGAAAGGAATCCAGGTGTTGCTGTTTTTTCTTCAAACCCACCAGAATCCATCGATTCAAATAAAGAATCAGACTCCCTCCAAACACACAAGGCTCAAGTCATCCAAACTCCTGCTGATAAGCTTACTCATGAATCCACTGTAAGACGGCGATGCCTTGGAGGGTTATTCATGGAATCCAGTGACTCAGAACCAGATAATCCCGCCAAGCCTCGACGTCATGGCTGCCGCTATATTTGCAGGAAGGAAAGCAAGGAAACAGATATTGGTATTGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

423

Amino Acids

47.3

Weight (kDa)

6.13

Isoelectric Point (pI)

54.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012084)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G75260
fragaria_vesca FvH4_2g39641
malus_domestica MD08G1030100.v1.1 MD15G1025500.v1.1
prunus_persica Prupe.1G377800_v2.0.a1
pyrus_communis pycom08g02390 pycom15g02190
rosa_chinensis RchiOBHm_Chr6g0301251
rosa_laevigata RLG00000011267
rosa_multiflora Rmu_sc0013354.1_g000012
rosa_roxburghii Rroxscaffold_171G00441310 Rroxscaffold_7G00167040
rosa_rugosa Rorug06G0302700
rosa_samantha Rh6AG416100 Rh6BG422800 Rh6BG422900 Rh6CG430500 Rh6DG416100
rosa_wichuraiana Rw6G036030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1213
AccII CGCG 1 cut(s) 834
AciI CCGC 4 cut(s) 832, 834, 1197, 1222
AcoI YGGCCR 3 cut(s) 564, 708, 715
AcsI RAATTY 2 cut(s) 541, 900
AcyI GRCGYC 1 cut(s) 1210
AfiI CCNNNNNNNGG 1 cut(s) 120
AflII CTTAAG 1 cut(s) 787
AgsI TTSAA 2 cut(s) 1029, 1053
AjnI CCWGG 4 cut(s) 6, 168, 496, 1006
AjuI GAANNNNNNNTTGG 1 cut(s) 1242
AluBI AGCT 8 cut(s) 503, 576, 609, 706, 792, 844, 866, 1117
AluI AGCT 8 cut(s) 503, 576, 609, 706, 792, 844, 866, 1117
Alw21I GWGCWC 1 cut(s) 611
Ama87I CYCGRG 1 cut(s) 66
AoxI GGCC 4 cut(s) 77, 564, 708, 715
ApeKI GCWGC 9 cut(s) 52, 55, 254, 257, 359, 458, 461, 503, 1218
ApoI RAATTY 2 cut(s) 541, 900
ArsI GACNNNNNNTTYG 2 cut(s) 902, 934
AspS9I GGNCC 1 cut(s) 910
AsuII TTCGAA 2 cut(s) 628, 921
AvaI CYCGRG 1 cut(s) 66
AvaII GGWCC 1 cut(s) 910
BalI TGGCCA 2 cut(s) 566, 710
BanII GRGCYC 1 cut(s) 611
BauI CACGAG 3 cut(s) 221, 323, 425
Bbv12I GWGCWC 1 cut(s) 611
BbvI GCAGC 9 cut(s) 39, 67, 241, 269, 371, 445, 473, 490, 1205
BccI CCATC 4 cut(s) 628, 719, 869, 1052
BceAI ACGGC 1 cut(s) 1157
BcgI CGANNNNNNTGC 2 cut(s) 47, 81
BciT130I CCWGG 4 cut(s) 8, 170, 498, 1008
BfmI CTRYAG 4 cut(s) 53, 255, 357, 459
BfrI CTTAAG 1 cut(s) 787
Bme1390I CCNGG 4 cut(s) 8, 170, 498, 1008
Bme18I GGWCC 1 cut(s) 910
BmeT110I CYCGRG 1 cut(s) 66
BmgT120I GGNCC 1 cut(s) 910
BmrFI CCNGG 4 cut(s) 8, 170, 498, 1008
BmrI ACTGGG 1 cut(s) 657
BmsI GCATC 7 cut(s) 87, 311, 413, 549, 650, 969, 1136
BmuI ACTGGG 1 cut(s) 657
BplI GAGNNNNNCTC 2 cut(s) 593, 625
BpmI CTGGAG 2 cut(s) 176, 519
Bpu14I TTCGAA 2 cut(s) 628, 921
BpuEI CTTGAG 2 cut(s) 598, 1074
Bsa29I ATCGAT 1 cut(s) 1047
BsaHI GRCGYC 1 cut(s) 1210
BsaJI CCNNGG 4 cut(s) 168, 693, 832, 1150
Bsc4I CCNNNNNNNGG 1 cut(s) 120
Bse1I ACTGG 5 cut(s) 652, 737, 763, 818, 1173
Bse3DI GCAATG 6 cut(s) 22, 100, 200, 506, 895, 955
BseBI CCWGG 4 cut(s) 8, 170, 498, 1008
BseCI ATCGAT 1 cut(s) 1047
BseDI CCNNGG 4 cut(s) 168, 693, 832, 1150
BseGI GGATG 1 cut(s) 1095
BseLI CCNNNNNNNGG 1 cut(s) 120
BseMI GCAATG 6 cut(s) 22, 100, 200, 506, 895, 955
BseMII CTCAG 6 cut(s) 282, 384, 486, 591, 807, 1194
BseNI ACTGG 5 cut(s) 652, 737, 763, 818, 1173
BseRI GAGGAG 3 cut(s) 601, 619, 786
BseXI GCAGC 9 cut(s) 39, 67, 241, 269, 371, 445, 473, 490, 1205
BsgI GTGCAG 1 cut(s) 1000
Bsh1236I CGCG 1 cut(s) 834
BshFI GGCC 4 cut(s) 79, 566, 710, 717
BshVI ATCGAT 1 cut(s) 1047
BsiHKAI GWGCWC 1 cut(s) 611
BsiHKCI CYCGRG 1 cut(s) 66
BslI CCNNNNNNNGG 1 cut(s) 120
BsnI GGCC 4 cut(s) 79, 566, 710, 717
BsoBI CYCGRG 1 cut(s) 66
Bsp119I TTCGAA 2 cut(s) 628, 921
Bsp1286I GDGCHC 1 cut(s) 611
Bsp143I GATC 6 cut(s) 3, 211, 313, 415, 517, 928
BspACI CCGC 4 cut(s) 832, 834, 1197, 1222
BspANI GGCC 4 cut(s) 79, 566, 710, 717
BspCNI CTCAG 6 cut(s) 281, 383, 485, 592, 806, 1193
BspDI ATCGAT 1 cut(s) 1047
BspFNI CGCG 1 cut(s) 834
BspHI TCATGA 1 cut(s) 1123
BspMAI CTGCAG 4 cut(s) 57, 259, 361, 463
BspT104I TTCGAA 2 cut(s) 628, 921
BspTI CTTAAG 1 cut(s) 787
BsrDI GCAATG 6 cut(s) 22, 100, 200, 506, 895, 955
BsrI ACTGG 5 cut(s) 652, 737, 763, 818, 1173
BssECI CCNNGG 4 cut(s) 168, 693, 832, 1150
BssMI GATC 6 cut(s) 3, 211, 313, 415, 517, 928
BssNI GRCGYC 1 cut(s) 1210
BssSI CACGAG 3 cut(s) 221, 323, 425
BssT1I CCWWGG 2 cut(s) 693, 1150
Bst2BI CACGAG 3 cut(s) 221, 323, 425
Bst2UI CCWGG 4 cut(s) 8, 170, 498, 1008
Bst4CI ACNGT 1 cut(s) 1135
BstACI GRCGYC 1 cut(s) 1210
BstAFI CTTAAG 1 cut(s) 787
BstBI TTCGAA 2 cut(s) 628, 921
BstC8I GCNNGC 8 cut(s) 107, 207, 309, 411, 513, 564, 708, 719
BstDEI CTNAG 6 cut(s) 268, 370, 472, 600, 793, 1180
BstDSI CCRYGG 1 cut(s) 832
BstF5I GGATG 1 cut(s) 1095
BstFNI CGCG 1 cut(s) 834
BstKTI GATC 6 cut(s) 6, 214, 316, 418, 520, 931
BstMBI GATC 6 cut(s) 3, 211, 313, 415, 517, 928
BstMWI GCNNNNNNNGC 7 cut(s) 106, 206, 308, 410, 512, 733, 1230
BstNI CCWGG 4 cut(s) 8, 170, 498, 1008
BstSCI CCNGG 4 cut(s) 6, 168, 496, 1006
BstSFI CTRYAG 4 cut(s) 53, 255, 357, 459
BstUI CGCG 1 cut(s) 834
BstV1I GCAGC 9 cut(s) 39, 67, 241, 269, 371, 445, 473, 490, 1205
Bsu15I ATCGAT 1 cut(s) 1047
BsuRI GGCC 4 cut(s) 79, 566, 710, 717
BsuTUI ATCGAT 1 cut(s) 1047
BtgI CCRYGG 1 cut(s) 832
BtgZI GCGATG 3 cut(s) 288, 390, 1159
BtsCI GGATG 1 cut(s) 1095
BtsIMutI CAGTG 3 cut(s) 140, 1131, 1180
Cac8I GCNNGC 8 cut(s) 107, 207, 309, 411, 513, 564, 708, 719
CciI TCATGA 1 cut(s) 1123
Cfr13I GGNCC 1 cut(s) 910
Cfr42I CCGCGG 1 cut(s) 835
ClaI ATCGAT 1 cut(s) 1047
CviAII CATG 6 cut(s) 151, 251, 455, 1124, 1165, 1214
DdeI CTNAG 6 cut(s) 268, 370, 472, 600, 793, 1180
DpnI GATC 6 cut(s) 5, 213, 315, 417, 519, 930
DpnII GATC 6 cut(s) 3, 211, 313, 415, 517, 928
EaeI YGGCCR 3 cut(s) 564, 708, 715
Ecl136II GAGCTC 1 cut(s) 609
Eco130I CCWWGG 2 cut(s) 693, 1150
Eco24I GRGCYC 1 cut(s) 611
Eco47I GGWCC 1 cut(s) 910
Eco53kI GAGCTC 1 cut(s) 609
Eco88I CYCGRG 1 cut(s) 66
EcoICRI GAGCTC 1 cut(s) 609
EcoRII CCWGG 4 cut(s) 6, 168, 496, 1006
EcoT14I CCWWGG 2 cut(s) 693, 1150
EcoT22I ATGCAT 1 cut(s) 102
EcoT38I GRGCYC 1 cut(s) 611
ErhI CCWWGG 2 cut(s) 693, 1150
FaeI CATG 6 cut(s) 154, 254, 458, 1127, 1168, 1217
FalI AAGNNNNNCTT 6 cut(s) 74, 106, 276, 308, 378, 410
FatI CATG 6 cut(s) 150, 250, 454, 1123, 1164, 1213
FauI CCCGC 1 cut(s) 1204
FokI GGATG 1 cut(s) 1082
FriOI GRGCYC 1 cut(s) 611
GsuI CTGGAG 2 cut(s) 176, 519
HaeIII GGCC 4 cut(s) 79, 566, 710, 717
Hin1I GRCGYC 1 cut(s) 1210
Hin1II CATG 6 cut(s) 154, 254, 458, 1127, 1168, 1217
HindIII AAGCTT 1 cut(s) 1115
Hpy166II GTNNAC 1 cut(s) 823
Hpy188I TCNGA 4 cut(s) 580, 796, 1066, 1183
Hpy188III TCNNGA 7 cut(s) 68, 270, 372, 474, 851, 955, 1124
Hpy8I GTNNAC 1 cut(s) 823
Hpy99I CGWCG 1 cut(s) 1212
HpyAV CCTTC 2 cut(s) 917, 1231
HpyCH4III ACNGT 1 cut(s) 1135
HpyCH4IV ACGT 1 cut(s) 1210
HpyF10VI GCNNNNNNNGC 7 cut(s) 106, 206, 308, 410, 512, 733, 1230
HpyF3I CTNAG 6 cut(s) 268, 370, 472, 600, 793, 1180
HpySE526I ACGT 1 cut(s) 1210
Hsp92I GRCGYC 1 cut(s) 1210
Hsp92II CATG 6 cut(s) 154, 254, 458, 1127, 1168, 1217
KspI CCGCGG 1 cut(s) 835
Kzo9I GATC 6 cut(s) 3, 211, 313, 415, 517, 928
LmnI GCTCC 5 cut(s) 157, 500, 606, 614, 773
Lsp1109I GCAGC 9 cut(s) 39, 67, 241, 269, 371, 445, 473, 490, 1205
LweI GCATC 7 cut(s) 87, 311, 413, 549, 650, 969, 1136
MaeII ACGT 1 cut(s) 1210
MaeIII GTNAC 6 cut(s) 10, 138, 748, 836, 991, 1175
MalI GATC 6 cut(s) 5, 213, 315, 417, 519, 930
MboI GATC 6 cut(s) 3, 211, 313, 415, 517, 928
MboII GAAGA 5 cut(s) 544, 695, 824, 908, 1017
MhlI GDGCHC 1 cut(s) 611
MlsI TGGCCA 2 cut(s) 566, 710
MluCI AATT 2 cut(s) 541, 900
MluNI TGGCCA 2 cut(s) 566, 710
MlyI GAGTC 7 cut(s) 58, 260, 362, 408, 464, 1061, 1172
Mox20I TGGCCA 2 cut(s) 566, 710
Mph1103I ATGCAT 1 cut(s) 102
MscI TGGCCA 2 cut(s) 566, 710
MseI TTAA 2 cut(s) 755, 788
Msp20I TGGCCA 2 cut(s) 566, 710
MspA1I CMGCKG 1 cut(s) 834
MspCI CTTAAG 1 cut(s) 787
MspR9I CCNGG 4 cut(s) 8, 170, 498, 1008
MvaI CCWGG 4 cut(s) 8, 170, 498, 1008
MvnI CGCG 1 cut(s) 834
MwoI GCNNNNNNNGC 7 cut(s) 106, 206, 308, 410, 512, 733, 1230
NdeII GATC 6 cut(s) 3, 211, 313, 415, 517, 928
NlaIII CATG 6 cut(s) 154, 254, 458, 1127, 1168, 1217
NmuCI GTSAC 4 cut(s) 138, 748, 991, 1175
NsiI ATGCAT 1 cut(s) 102
NspV TTCGAA 2 cut(s) 628, 921
PagI TCATGA 1 cut(s) 1123
PfeI GAWTC 6 cut(s) 1003, 1040, 1049, 1061, 1127, 1169
PleI GAGTC 7 cut(s) 58, 260, 362, 407, 464, 1061, 1172
PpsI GAGTC 7 cut(s) 58, 260, 362, 407, 464, 1061, 1172
Psp124BI GAGCTC 1 cut(s) 611
Psp6I CCWGG 4 cut(s) 6, 168, 496, 1006
PspGI CCWGG 4 cut(s) 6, 168, 496, 1006
PspPI GGNCC 1 cut(s) 910
PstI CTGCAG 4 cut(s) 57, 259, 361, 463
SacI GAGCTC 1 cut(s) 611
SacII CCGCGG 1 cut(s) 835
SaqAI TTAA 2 cut(s) 755, 788
Sau3AI GATC 6 cut(s) 3, 211, 313, 415, 517, 928
Sau96I GGNCC 1 cut(s) 910
SchI GAGTC 7 cut(s) 58, 260, 362, 408, 464, 1061, 1172
ScrFI CCNGG 4 cut(s) 8, 170, 498, 1008
SduI GDGCHC 1 cut(s) 611
SfaNI GCATC 7 cut(s) 87, 311, 413, 549, 650, 969, 1136
SfcI CTRYAG 4 cut(s) 53, 255, 357, 459
Sfr303I CCGCGG 1 cut(s) 835
SfuI TTCGAA 2 cut(s) 628, 921
SgrBI CCGCGG 1 cut(s) 835
SinI GGWCC 1 cut(s) 910
SmlI CTYRAG 3 cut(s) 613, 787, 1089
SmoI CTYRAG 3 cut(s) 613, 787, 1089
Sse9I AATT 2 cut(s) 541, 900
SsiI CCGC 4 cut(s) 832, 834, 1197, 1222
SstI GAGCTC 1 cut(s) 611
StyD4I CCNGG 4 cut(s) 6, 168, 496, 1006
StyI CCWWGG 2 cut(s) 693, 1150
TaaI ACNGT 1 cut(s) 1135
TaiI ACGT 1 cut(s) 1213
TaqI TCGA 5 cut(s) 628, 644, 921, 1047, 1207
TasI AATT 2 cut(s) 541, 900
TauI GCSGC 2 cut(s) 834, 1224
TfiI GAWTC 6 cut(s) 1003, 1040, 1049, 1061, 1127, 1169
Tru1I TTAA 2 cut(s) 755, 788
Tru9I TTAA 2 cut(s) 755, 788
TscAI CASTG 3 cut(s) 147, 1138, 1180
TseFI GTSAC 4 cut(s) 138, 748, 991, 1175
TseI GCWGC 9 cut(s) 52, 55, 254, 257, 359, 458, 461, 503, 1218
Tsp45I GTSAC 4 cut(s) 138, 748, 991, 1175
TspDTI ATGAA 6 cut(s) 239, 341, 443, 876, 1140, 1153
TspGWI ACGGA 1 cut(s) 1010
TspRI CASTG 3 cut(s) 147, 1138, 1180
Vha464I CTTAAG 1 cut(s) 787
VpaK11BI GGWCC 1 cut(s) 910
XapI RAATTY 2 cut(s) 541, 900
ZraI GACGTC 1 cut(s) 1211
Zsp2I ATGCAT 1 cut(s) 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.