FvH4_2g39641

No description available

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
28420421 .. 28422160
1740 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g39641.t1

Sequence Viewer

Length: 1740 bp
ATGGCAGACAAAAGGCATTCCTTTCGCTTCCGGTTCCCTTGGAGTCATAGTCCCCGTACTAAAGATGAACCTAAAACCAAAAATCCTGCACAGTCAACCTCCACAGTAGTCCCTGATGACAGGCCACCATTTCGGCCAGCAGGAAAAGCTCCGGTGAAGGACACTCCTTCACAATCTCAGAAGCCTCAAAAAACTGAACCTCCACCATCTCATGCAGCCAGTGAGTCCCCAAAGACTCAATCCCCGTCTCGGTTATCTCCATCAAGGAAATCACATCCCACCACTCAACAAAGCTCTCCCCCATCACCTGCATCCTCTCAATCTCAACCAGTAGAGGAAGCAATATCTCAGCCACAGAAACATCGTCGAAAAATAGAGATCATATCTGAAACTGATTCCGGTGCTGAGGATAGTACTCCTAGAGAAACCACCTCTCAAACTCGTGAAACTTCTCCTGAGGGTATACAACTATTTGCTTCATCTGATAAATCAGATTCTGATACCCCAAATGCAGATCACAAGCAGATTTCGGAATCAGAGACAGAGTCAAAAGAGCCCAAAGAAGCGGAGAAAGAAGTGCAGGCACCGGCAGTAGAAGAAAAGACCAATGGTTACACAAAACCATTGCAAGAAAGGATCACTCAACTTCATGCTGCCGCAAAGGACTCAGCAAACTTGGGAAATCAGACCAAAGACCCCATTGGAGTTGCATTGCAAGCAGAACGGCGACACGAGAAGCAAGAAAGGGTCACTGAACCTCATGCTGCAGTGACAGACTCAGGACATCACACCAAAGATGGAGTTGCATTGCAAGCAGATCAGGAAAGGGTCACTGGACTTCATGCTGCAGCAACAGACTTGGAAACTCACACCAAAGACCCCCTTGGAGGTGCATTGCAAGCAGATCAGCGGCACGAGAAGCAAGAAAGGGTCACTGAACCTCATGCTGCAGCCATAGACGCAGGAAATCACACCAAAGATGGAGTTGCATTGCAACCAGAACAGGAGAAGAAAGAGAAGTTTGAGACGAAAGTGATACTAGCCACCACAGGCTCTGATGAGAGGAACTCCACAAGGGTGTCTATTAGAAAGATGGTTGCATCAACTGCGGAACAAGCTCCTCCAAATAAAGAAATCAGGGAAGATGTTTCCAAGGTTGATAAGCTCGCTAGTGCACACCAAATGCTTGATCAGCCAGTTGGTGTTGTGACCTTAACGGGAGAAAACAGAGGAGCAGCAATGAACTTAAGCTCAGAACCAGGAAAACGAGAAGAAGCAGTGCACATACGCCACAATTACAAGCTCAATCCAGATGATAATGAAGCTACTACTGATGGAGAGGTAAGCACTAGGGAAGACATTTTGGAGGACCATAAGAATGAGGGAGATCAACAAAGGAGCACATACATCAACAGCAATGTCCAGAGCGTCAATAACTCTATTGTATGCAATAGTTCTGTCACGGAAAGGGATCCAGGTGTTGCTGTGTTTTCATCAAACCCGCCAGAATCCATCAATTCAAACAAAGAATCAGACTCCCACCAAACGCACAAGTCTCAAGTCATCCAAACTCCTGCCGATAGGCTCACTTATGAATCCGCTGTAAGACGGCGATGCCTCAAAGGACTATTCCTGGAATCAAGTGACTCAGAACCAGATAATCCCGCCAAGCCTCGGCGTCATGGCTGCCGCTATGTTTGTGGAAAACAAAGGAAGGAGACAGATATCGGAATTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

580

Amino Acids

63.67

Weight (kDa)

6.12

Isoelectric Point (pI)

62.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012084)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 316
Acc36I ACCTGC 1 cut(s) 316
AccB1I GGYRCC 1 cut(s) 583
AccI GTMKAC 1 cut(s) 463
AciI CCGC 8 cut(s) 566, 657, 910, 1109, 1502, 1599, 1665, 1690
AclWI GGATC 3 cut(s) 644, 1466, 1479
AcoI YGGCCR 1 cut(s) 134
AcyI GRCGYC 1 cut(s) 1678
AfaI GTAC 2 cut(s) 58, 415
AfiI CCNNNNNNNGG 3 cut(s) 249, 887, 1674
AflII CTTAAG 1 cut(s) 1246
AgsI TTSAA 1 cut(s) 1521
AjnI CCWGG 3 cut(s) 1258, 1474, 1632
AleI CACNNNNGTG 1 cut(s) 1076
AluBI AGCT 7 cut(s) 149, 294, 1118, 1165, 1251, 1303, 1325
AluI AGCT 7 cut(s) 149, 294, 1118, 1165, 1251, 1303, 1325
Alw21I GWGCWC 3 cut(s) 1177, 1284, 1403
Alw26I GTCTC 5 cut(s) 252, 533, 1019, 1560, 1712
Alw44I GTGCAC 2 cut(s) 1173, 1280
AlwI GGATC 3 cut(s) 644, 1466, 1479
AlwNI CAGNNNCTG 2 cut(s) 497, 1055
AoxI GGCC 2 cut(s) 122, 134
ApaLI GTGCAC 2 cut(s) 1173, 1280
ApeKI GCWGC 9 cut(s) 215, 653, 764, 845, 848, 947, 950, 1235, 1686
AspS9I GGNCC 1 cut(s) 1369
AsuHPI GGTGA 2 cut(s) 166, 297
AvaII GGWCC 1 cut(s) 1369
AxyI CCTNAGG 1 cut(s) 456
BaeGI GKGCMC 2 cut(s) 1177, 1284
BamHI GGATCC 1 cut(s) 1471
BanI GGYRCC 1 cut(s) 583
BanII GRGCYC 1 cut(s) 558
BauI CACGAG 3 cut(s) 441, 731, 914
BbsI GAAGAC 1 cut(s) 1362
Bbv12I GWGCWC 3 cut(s) 1177, 1284, 1403
BbvCI CCTCAGC 1 cut(s) 405
BbvI GCAGC 9 cut(s) 227, 640, 751, 832, 860, 934, 962, 1247, 1673
BccI CCATC 8 cut(s) 214, 268, 310, 791, 974, 1087, 1328, 1520
BceAI ACGGC 2 cut(s) 740, 1625
BcgI CGANNNNNNTGC 2 cut(s) 5, 39
BciT130I CCWGG 3 cut(s) 1260, 1476, 1634
BclI TGATCA 1 cut(s) 1189
BcoDI GTCTC 5 cut(s) 252, 533, 1019, 1560, 1712
BfaI CTAG 4 cut(s) 420, 1040, 1170, 1350
BfmI CTRYAG 3 cut(s) 765, 846, 948
BfrI CTTAAG 1 cut(s) 1246
BfuAI ACCTGC 1 cut(s) 316
BmcAI AGTACT 1 cut(s) 415
Bme1390I CCNGG 3 cut(s) 1260, 1476, 1634
Bme18I GGWCC 1 cut(s) 1369
BmgT120I GGNCC 1 cut(s) 1369
BmiI GGNNCC 3 cut(s) 35, 585, 1473
BmrFI CCNGG 3 cut(s) 1260, 1476, 1634
BmsI GCATC 3 cut(s) 320, 1109, 1604
BpiI GAAGAC 1 cut(s) 1362
BplI GAGNNNNNCTC 2 cut(s) 1052, 1084
Bpu10I CCTNAGC 1 cut(s) 405
BpuEI CTTGAG 1 cut(s) 1542
BsaHI GRCGYC 1 cut(s) 1678
BsaJI CCNNGG 4 cut(s) 38, 883, 1152, 1673
BsaWI WCCGGW 3 cut(s) 30, 151, 398
BsaXI ACNNNNNCTCC 4 cut(s) 34, 64, 184, 214
Bsc4I CCNNNNNNNGG 3 cut(s) 249, 887, 1674
Bse118I RCCGGY 1 cut(s) 586
Bse1I ACTGG 4 cut(s) 219, 329, 838, 1196
Bse21I CCTNAGG 1 cut(s) 456
Bse3DI GCAATG 7 cut(s) 623, 710, 806, 893, 989, 1245, 1423
BseBI CCWGG 3 cut(s) 1260, 1476, 1634
BseDI CCNNGG 4 cut(s) 38, 883, 1152, 1673
BseGI GGATG 3 cut(s) 274, 311, 1563
BseLI CCNNNNNNNGG 3 cut(s) 249, 887, 1674
BseMI GCAATG 7 cut(s) 623, 710, 806, 893, 989, 1245, 1423
BseMII CTCAG 8 cut(s) 191, 362, 396, 447, 681, 792, 1266, 1662
BseNI ACTGG 4 cut(s) 219, 329, 838, 1196
BseRI GAGGAG 2 cut(s) 1110, 1245
BseSI GKGCMC 2 cut(s) 1177, 1284
BseXI GCAGC 9 cut(s) 227, 640, 751, 832, 860, 934, 962, 1247, 1673
BsgI GTGCAG 2 cut(s) 72, 599
BshFI GGCC 2 cut(s) 124, 136
BshNI GGYRCC 1 cut(s) 583
BsiHKAI GWGCWC 3 cut(s) 1177, 1284, 1403
BsiSI CCGG 4 cut(s) 31, 152, 399, 587
BslFI GGGAC 3 cut(s) 36, 95, 211
BslI CCNNNNNNNGG 3 cut(s) 249, 887, 1674
BsmAI GTCTC 5 cut(s) 252, 533, 1019, 1560, 1712
BsmBI CGTCTC 2 cut(s) 252, 1019
BsmFI GGGAC 3 cut(s) 36, 95, 211
BsmI GAATGC 1 cut(s) 16
BsnI GGCC 2 cut(s) 124, 136
Bsp1286I GDGCHC 4 cut(s) 558, 1177, 1284, 1403
Bsp143I GATC 8 cut(s) 378, 514, 636, 817, 904, 1189, 1387, 1471
BspACI CCGC 8 cut(s) 566, 657, 910, 1109, 1502, 1599, 1665, 1690
BspANI GGCC 2 cut(s) 124, 136
BspCNI CTCAG 8 cut(s) 190, 361, 397, 448, 680, 791, 1265, 1661
BspLI GGNNCC 3 cut(s) 35, 585, 1473
BspMAI CTGCAG 3 cut(s) 769, 850, 952
BspMI ACCTGC 1 cut(s) 316
BspPI GGATC 3 cut(s) 644, 1466, 1479
BspT107I GGYRCC 1 cut(s) 583
BspTI CTTAAG 1 cut(s) 1246
BsrDI GCAATG 7 cut(s) 623, 710, 806, 893, 989, 1245, 1423
BsrFI RCCGGY 1 cut(s) 586
BsrI ACTGG 4 cut(s) 219, 329, 838, 1196
BssAI RCCGGY 1 cut(s) 586
BssECI CCNNGG 4 cut(s) 38, 883, 1152, 1673
BssMI GATC 8 cut(s) 378, 514, 636, 817, 904, 1189, 1387, 1471
BssNAI GTATAC 1 cut(s) 464
BssNI GRCGYC 1 cut(s) 1678
BssSI CACGAG 3 cut(s) 441, 731, 914
BssT1I CCWWGG 3 cut(s) 38, 883, 1152
Bst1107I GTATAC 1 cut(s) 464
Bst2BI CACGAG 3 cut(s) 441, 731, 914
Bst2UI CCWGG 3 cut(s) 1260, 1476, 1634
Bst4CI ACNGT 2 cut(s) 93, 106
BstACI GRCGYC 1 cut(s) 1678
BstAFI CTTAAG 1 cut(s) 1246
BstAPI GCANNNNNTGC 1 cut(s) 1106
BstC8I GCNNGC 6 cut(s) 138, 582, 717, 813, 900, 1167
BstDEI CTNAG 8 cut(s) 177, 348, 405, 456, 667, 778, 1252, 1648
BstF5I GGATG 3 cut(s) 274, 311, 1563
BstKTI GATC 8 cut(s) 381, 517, 639, 820, 907, 1192, 1390, 1474
BstMAI GTCTC 5 cut(s) 252, 533, 1019, 1560, 1712
BstMBI GATC 8 cut(s) 378, 514, 636, 817, 904, 1189, 1387, 1471
BstMWI GCNNNNNNNGC 9 cut(s) 146, 716, 812, 899, 919, 959, 1106, 1115, 1192
BstNI CCWGG 3 cut(s) 1260, 1476, 1634
BstSCI CCNGG 3 cut(s) 1258, 1474, 1632
BstSFI CTRYAG 3 cut(s) 765, 846, 948
BstSLI GKGCMC 2 cut(s) 1177, 1284
BstV1I GCAGC 9 cut(s) 227, 640, 751, 832, 860, 934, 962, 1247, 1673
BstV2I GAAGAC 1 cut(s) 1362
BstX2I RGATCY 1 cut(s) 1471
BstYI RGATCY 1 cut(s) 1471
BstZ17I GTATAC 1 cut(s) 464
Bsu36I CCTNAGG 1 cut(s) 456
BsuRI GGCC 2 cut(s) 124, 136
BtgZI GCGATG 1 cut(s) 1627
BtsCI GGATG 3 cut(s) 274, 311, 1563
BtsI GCAGTG 2 cut(s) 774, 1284
BtsIMutI CAGTG 6 cut(s) 226, 750, 774, 831, 933, 1284
BveI ACCTGC 1 cut(s) 316
Cac8I GCNNGC 6 cut(s) 138, 582, 717, 813, 900, 1167
CaiI CAGNNNCTG 2 cut(s) 497, 1055
Cfr10I RCCGGY 1 cut(s) 586
Cfr13I GGNCC 1 cut(s) 1369
CseI GACGC 3 cut(s) 968, 1417, 1667
Csp6I GTAC 2 cut(s) 57, 414
CviAII CATG 6 cut(s) 212, 650, 761, 842, 944, 1682
CviQI GTAC 2 cut(s) 57, 414
DdeI CTNAG 8 cut(s) 177, 348, 405, 456, 667, 778, 1252, 1648
DpnI GATC 8 cut(s) 380, 516, 638, 819, 906, 1191, 1389, 1473
DpnII GATC 8 cut(s) 378, 514, 636, 817, 904, 1189, 1387, 1471
EaeI YGGCCR 1 cut(s) 134
Eco130I CCWWGG 3 cut(s) 38, 883, 1152
Eco24I GRGCYC 1 cut(s) 558
Eco32I GATATC 1 cut(s) 1726
Eco47I GGWCC 1 cut(s) 1369
Eco81I CCTNAGG 1 cut(s) 456
EcoRII CCWGG 3 cut(s) 1258, 1474, 1632
EcoRV GATATC 1 cut(s) 1726
EcoT14I CCWWGG 3 cut(s) 38, 883, 1152
EcoT38I GRGCYC 1 cut(s) 558
ErhI CCWWGG 3 cut(s) 38, 883, 1152
Esp3I CGTCTC 2 cut(s) 252, 1019
FaeI CATG 6 cut(s) 215, 653, 764, 845, 947, 1685
FalI AAGNNNNNCTT 2 cut(s) 867, 899
FaqI GGGAC 3 cut(s) 36, 95, 211
FatI CATG 6 cut(s) 211, 649, 760, 841, 943, 1681
FauI CCCGC 2 cut(s) 1509, 1672
FbaI TGATCA 1 cut(s) 1189
FblI GTMKAC 1 cut(s) 463
FokI GGATG 3 cut(s) 261, 298, 1550
FriOI GRGCYC 1 cut(s) 558
FspBI CTAG 4 cut(s) 420, 1040, 1170, 1350
HaeIII GGCC 2 cut(s) 124, 136
HapII CCGG 4 cut(s) 31, 152, 399, 587
HgaI GACGC 3 cut(s) 968, 1417, 1667
Hin1I GRCGYC 1 cut(s) 1678
Hin1II CATG 6 cut(s) 215, 653, 764, 845, 947, 1685
HincII GTYRAC 1 cut(s) 96
HindII GTYRAC 1 cut(s) 96
HpaII CCGG 4 cut(s) 31, 152, 399, 587
HphI GGTGA 2 cut(s) 166, 297
Hpy166II GTNNAC 4 cut(s) 96, 464, 1175, 1282
Hpy188III TCNNGA 6 cut(s) 443, 455, 780, 821, 1310, 1423
Hpy8I GTNNAC 4 cut(s) 96, 464, 1175, 1282
Hpy99I CGWCG 1 cut(s) 369
HpyAV CCTTC 3 cut(s) 151, 177, 1708
HpyCH4III ACNGT 2 cut(s) 93, 106
HpyF10VI GCNNNNNNNGC 9 cut(s) 146, 716, 812, 899, 919, 959, 1106, 1115, 1192
HpyF3I CTNAG 8 cut(s) 177, 348, 405, 456, 667, 778, 1252, 1648
Hsp92I GRCGYC 1 cut(s) 1678
Hsp92II CATG 6 cut(s) 215, 653, 764, 845, 947, 1685
Ksp22I TGATCA 1 cut(s) 1189
Kzo9I GATC 8 cut(s) 378, 514, 636, 817, 904, 1189, 1387, 1471
LmnI GCTCC 4 cut(s) 154, 1123, 1232, 1398
Lsp1109I GCAGC 9 cut(s) 227, 640, 751, 832, 860, 934, 962, 1247, 1673
LweI GCATC 3 cut(s) 320, 1109, 1604
MaeI CTAG 4 cut(s) 420, 1040, 1170, 1350
MaeIII GTNAC 8 cut(s) 611, 748, 769, 829, 931, 1207, 1459, 1643
MalI GATC 8 cut(s) 380, 516, 638, 819, 906, 1191, 1389, 1473
MboI GATC 8 cut(s) 378, 514, 636, 817, 904, 1189, 1387, 1471
MboII GAAGA 5 cut(s) 608, 1021, 1154, 1283, 1367
MflI RGATCY 1 cut(s) 1471
MhlI GDGCHC 4 cut(s) 558, 1177, 1284, 1403
MluCI AATT 3 cut(s) 1294, 1516, 1731
MlyI GAGTC 8 cut(s) 52, 229, 233, 554, 659, 770, 1529, 1640
MseI TTAA 3 cut(s) 1214, 1247, 1738
MslI CAYNNNNRTG 2 cut(s) 1076, 1377
MspA1I CMGCKG 2 cut(s) 910, 1601
MspCI CTTAAG 1 cut(s) 1246
MspI CCGG 4 cut(s) 31, 152, 399, 587
MspR9I CCNGG 3 cut(s) 1260, 1476, 1634
Mva1269I GAATGC 1 cut(s) 16
MvaI CCWGG 3 cut(s) 1260, 1476, 1634
MwoI GCNNNNNNNGC 9 cut(s) 146, 716, 812, 899, 919, 959, 1106, 1115, 1192
NdeII GATC 8 cut(s) 378, 514, 636, 817, 904, 1189, 1387, 1471
NlaIII CATG 6 cut(s) 215, 653, 764, 845, 947, 1685
NlaIV GGNNCC 3 cut(s) 35, 585, 1473
NmeAIII GCCGAG 1 cut(s) 1654
NmuCI GTSAC 7 cut(s) 748, 769, 829, 931, 1207, 1459, 1643
OliI CACNNNNGTG 1 cut(s) 1076
PaqCI CACCTGC 1 cut(s) 316
PctI GAATGC 1 cut(s) 16
PfeI GAWTC 7 cut(s) 395, 494, 533, 1508, 1529, 1595, 1637
PflFI GACNNNGTC 1 cut(s) 544
PfoI TCCNGGA 1 cut(s) 1632
PleI GAGTC 8 cut(s) 51, 229, 232, 553, 659, 770, 1529, 1640
PpsI GAGTC 8 cut(s) 51, 229, 232, 553, 659, 770, 1529, 1640
Psp6I CCWGG 3 cut(s) 1258, 1474, 1632
PspGI CCWGG 3 cut(s) 1258, 1474, 1632
PspN4I GGNNCC 3 cut(s) 35, 585, 1473
PspPI GGNCC 1 cut(s) 1369
PstI CTGCAG 3 cut(s) 769, 850, 952
PstNI CAGNNNCTG 2 cut(s) 497, 1055
PsuI RGATCY 1 cut(s) 1471
PsyI GACNNNGTC 1 cut(s) 544
RsaI GTAC 2 cut(s) 58, 415
RsaNI GTAC 2 cut(s) 57, 414
RseI CAYNNNNRTG 2 cut(s) 1076, 1377
SaqAI TTAA 3 cut(s) 1214, 1247, 1738
Sau3AI GATC 8 cut(s) 378, 514, 636, 817, 904, 1189, 1387, 1471
Sau96I GGNCC 1 cut(s) 1369
ScaI AGTACT 1 cut(s) 415
SchI GAGTC 8 cut(s) 52, 229, 233, 554, 659, 770, 1529, 1640
ScrFI CCNGG 3 cut(s) 1260, 1476, 1634
SduI GDGCHC 4 cut(s) 558, 1177, 1284, 1403
SfaNI GCATC 3 cut(s) 320, 1109, 1604
SfcI CTRYAG 3 cut(s) 765, 846, 948
SinI GGWCC 1 cut(s) 1369
SmiMI CAYNNNNRTG 2 cut(s) 1076, 1377
SmlI CTYRAG 2 cut(s) 1246, 1557
SmoI CTYRAG 2 cut(s) 1246, 1557
Sse9I AATT 3 cut(s) 1294, 1516, 1731
SsiI CCGC 8 cut(s) 566, 657, 910, 1109, 1502, 1599, 1665, 1690
SspMI CTAG 4 cut(s) 420, 1040, 1170, 1350
StyD4I CCNGG 3 cut(s) 1258, 1474, 1632
StyI CCWWGG 3 cut(s) 38, 883, 1152
TaaI ACNGT 2 cut(s) 93, 106
TaqI TCGA 1 cut(s) 367
TasI AATT 3 cut(s) 1294, 1516, 1731
TatI WGTACW 1 cut(s) 413
TauI GCSGC 3 cut(s) 659, 913, 1692
TfiI GAWTC 7 cut(s) 395, 494, 533, 1508, 1529, 1595, 1637
Tru1I TTAA 3 cut(s) 1214, 1247, 1738
Tru9I TTAA 3 cut(s) 1214, 1247, 1738
TscAI CASTG 6 cut(s) 226, 757, 774, 838, 940, 1284
TseFI GTSAC 7 cut(s) 748, 769, 829, 931, 1207, 1459, 1643
TseI GCWGC 9 cut(s) 215, 653, 764, 845, 848, 947, 950, 1235, 1686
Tsp45I GTSAC 7 cut(s) 748, 769, 829, 931, 1207, 1459, 1643
TspDTI ATGAA 8 cut(s) 81, 468, 638, 830, 1256, 1335, 1482, 1608
TspGWI ACGGA 1 cut(s) 1478
TspRI CASTG 6 cut(s) 226, 757, 774, 838, 940, 1284
Tth111I GACNNNGTC 1 cut(s) 544
Vha464I CTTAAG 1 cut(s) 1246
VneI GTGCAC 2 cut(s) 1173, 1280
VpaK11BI GGWCC 1 cut(s) 1369
XmiI GTMKAC 1 cut(s) 463
XspI CTAG 4 cut(s) 420, 1040, 1170, 1350
ZrmI AGTACT 1 cut(s) 415
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.