MD15G1025500.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0012084
Physical Location & Seq
Reverse (-)
1489357 .. 1491099
1743 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1025500.v1.1.491

Sequence Viewer

Length: 1011 bp
ATGGCAAACAAAAAGCACTTTCGGTTCCCTTGGCGTAGGCGTAGTTCTCAAGTAGAGCCCGATCCAAGTCCAGTGGCTAAAACCAAAAACCCTGCCCAGACTACCACCTCAGCACCTGTTGAGCGACCACCATTTCGGCCTGCGGGGAAAGCCCCTGTGAAAGCCTCTCCTTCCCAAGCTCAGGCTCCATTGAAGATTGAACCTCCGCCACCATCACAGCCCCACACTCAAGAGGACTCTCAGCTTGCTTCCTTGTCTGCTGAATCTCCATCACCTGCCACTCAACCAGAACCAAGGGAGCCATATGCAGAAATCAGCACATCCGAAACTATTCCCAAAGCTCAGAATAATACTCCAACCGCAGAGCAAACTCATGCAGCTTCCACAGAAGCTGTAGAAACAGTTGCTTCACCCGAGAAGGCAGATCCTGATACCGTTGGCGGAGATCAAAAGCACCATGCCAAAACCCCAAAAGACAGAAGCACCTCAAGGGTGTCTAATCAGAAGATGGTTTCATTGACCGCGGAACAAGCTCCCCTGCATAAAGAAATCAAGGAAGATGCTTTGGAAATGAATAAGTTGGCCACTGAGGACCAAATGCTTGAAAAACCAGTTAGCGTCGTAACCCTATCTGGTGAAAACAGAGGAGCAACAATGCACAATAGCTCAGAACCAGAAAACGGAGAAGAATTCATGCCCATACACCGCAGTTATAAGACCAATCCAGATGACAGCCTGGAAGCTACTACTGATGGAGAGGAAAGCAGCGAGGGGGAAAATTTCGACCAGACGAGTAAAGATCATCAGAGGATAGCATATGTCAACAGCAATGTACAGGGTATCAATAATTCTGTCGTGTTCTATACTTCTGTCGCAGAAAGGAATCCAGGTGTTCAGTCGGTTTTTTCTCAAAAGCCAGCAGAATCCATCAAGCCAAACGGTAAATCAGAGCCCCTCGAAACACACAAGGCTGAAATAACCAAAACACCTGAGAAGCTTAGTCCACTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

337

Amino Acids

36.62

Weight (kDa)

5.57

Isoelectric Point (pI)

66.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012084)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G75260
fragaria_vesca FvH4_2g39641
malus_domestica MD08G1030100.v1.1 MD15G1025500.v1.1
prunus_persica Prupe.1G377800_v2.0.a1
pyrus_communis pycom08g02390 pycom15g02190
rosa_chinensis RchiOBHm_Chr6g0301251
rosa_laevigata RLG00000011267
rosa_multiflora Rmu_sc0013354.1_g000012
rosa_roxburghii Rroxscaffold_171G00441310 Rroxscaffold_7G00167040
rosa_rugosa Rorug06G0302700
rosa_samantha Rh6AG416100 Rh6BG422800 Rh6BG422900 Rh6CG430500 Rh6DG416100
rosa_wichuraiana Rw6G036030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 714
AarI CACCTGC 1 cut(s) 283
Acc36I ACCTGC 1 cut(s) 283
AccII CGCG 1 cut(s) 524
AciI CCGC 7 cut(s) 143, 206, 360, 441, 522, 524, 706
AclWI GGATC 2 cut(s) 56, 419
AcoI YGGCCR 1 cut(s) 582
AcsI RAATTY 2 cut(s) 689, 778
AfaI GTAC 1 cut(s) 834
AfiI CCNNNNNNNGG 2 cut(s) 181, 680
AgsI TTSAA 3 cut(s) 193, 200, 605
AjnI CCWGG 2 cut(s) 735, 886
AluBI AGCT 9 cut(s) 179, 244, 341, 380, 392, 533, 666, 743, 997
AluI AGCT 9 cut(s) 179, 244, 341, 380, 392, 533, 666, 743, 997
AlwI GGATC 2 cut(s) 56, 419
AlwNI CAGNNNCTG 3 cut(s) 116, 392, 428
Ama87I CYCGRG 1 cut(s) 413
AoxI GGCC 2 cut(s) 137, 582
ApeKI GCWGC 2 cut(s) 377, 765
ApoI RAATTY 2 cut(s) 689, 778
ArsI GACNNNNNNTTYG 2 cut(s) 117, 149
Asp700I GAANNNNTTC 1 cut(s) 330
AspS9I GGNCC 1 cut(s) 592
AsuHPI GGTGA 3 cut(s) 264, 402, 647
AvaI CYCGRG 1 cut(s) 413
AvaII GGWCC 1 cut(s) 592
BalI TGGCCA 1 cut(s) 584
BanII GRGCYC 2 cut(s) 60, 954
BbvCI CCTCAGC 1 cut(s) 109
BbvI GCAGC 2 cut(s) 389, 777
BccI CCATC 5 cut(s) 220, 277, 502, 746, 935
BciT130I CCWGG 2 cut(s) 737, 888
BfmI CTRYAG 1 cut(s) 393
BfuAI ACCTGC 1 cut(s) 283
BisI GCNGC 2 cut(s) 378, 766
BlsI GCNGC 2 cut(s) 379, 767
Bme1390I CCNGG 2 cut(s) 737, 888
Bme18I GGWCC 1 cut(s) 592
BmeT110I CYCGRG 1 cut(s) 413
BmgT120I GGNCC 1 cut(s) 592
BmiI GGNNCC 3 cut(s) 26, 186, 300
BmrFI CCNGG 2 cut(s) 737, 888
BmsI GCATC 1 cut(s) 550
Bpu10I CCTNAGC 2 cut(s) 109, 180
BpuEI CTTGAG 3 cut(s) 33, 213, 472
BsaJI CCNNGG 3 cut(s) 29, 293, 522
Bsc4I CCNNNNNNNGG 2 cut(s) 181, 680
Bse1I ACTGG 2 cut(s) 71, 611
Bse3DI GCAATG 1 cut(s) 835
BseBI CCWGG 2 cut(s) 737, 888
BseDI CCNNGG 3 cut(s) 29, 293, 522
BseGI GGATG 1 cut(s) 320
BseLI CCNNNNNNNGG 2 cut(s) 181, 680
BseMI GCAATG 1 cut(s) 835
BseMII CTCAG 7 cut(s) 123, 194, 254, 356, 579, 681, 981
BseNI ACTGG 2 cut(s) 71, 611
BseRI GAGGAG 1 cut(s) 660
BseXI GCAGC 2 cut(s) 389, 777
Bsh1236I CGCG 1 cut(s) 524
BshFI GGCC 2 cut(s) 139, 584
BsiHKCI CYCGRG 1 cut(s) 413
BslI CCNNNNNNNGG 2 cut(s) 181, 680
BsnI GGCC 2 cut(s) 139, 584
BsoBI CYCGRG 1 cut(s) 413
Bsp1286I GDGCHC 2 cut(s) 60, 954
Bsp1407I TGTACA 1 cut(s) 832
Bsp143I GATC 4 cut(s) 61, 424, 445, 799
BspACI CCGC 7 cut(s) 143, 206, 360, 441, 522, 524, 706
BspANI GGCC 2 cut(s) 139, 584
BspCNI CTCAG 7 cut(s) 122, 193, 253, 355, 580, 680, 982
BspFNI CGCG 1 cut(s) 524
BspLI GGNNCC 3 cut(s) 26, 186, 300
BspMI ACCTGC 1 cut(s) 283
BspPI GGATC 2 cut(s) 56, 419
BsrDI GCAATG 1 cut(s) 835
BsrGI TGTACA 1 cut(s) 832
BsrI ACTGG 2 cut(s) 71, 611
BssECI CCNNGG 3 cut(s) 29, 293, 522
BssMI GATC 4 cut(s) 61, 424, 445, 799
BssT1I CCWWGG 2 cut(s) 29, 293
Bst2UI CCWGG 2 cut(s) 737, 888
Bst4CI ACNGT 4 cut(s) 403, 436, 941, 1008
BstAUI TGTACA 1 cut(s) 832
BstC8I GCNNGC 3 cut(s) 141, 246, 918
BstDEI CTNAG 8 cut(s) 109, 180, 240, 342, 588, 667, 990, 998
BstDSI CCRYGG 1 cut(s) 522
BstF5I GGATG 1 cut(s) 320
BstFNI CGCG 1 cut(s) 524
BstKTI GATC 4 cut(s) 64, 427, 448, 802
BstMBI GATC 4 cut(s) 61, 424, 445, 799
BstMWI GCNNNNNNNGC 2 cut(s) 149, 530
BstNI CCWGG 2 cut(s) 737, 888
BstSCI CCNGG 2 cut(s) 735, 886
BstSFI CTRYAG 1 cut(s) 393
BstUI CGCG 1 cut(s) 524
BstV1I GCAGC 2 cut(s) 389, 777
BstX2I RGATCY 1 cut(s) 424
BstYI RGATCY 1 cut(s) 424
BsuRI GGCC 2 cut(s) 139, 584
BtgI CCRYGG 1 cut(s) 522
BtsCI GGATG 1 cut(s) 320
BtsIMutI CAGTG 3 cut(s) 78, 585, 1004
BveI ACCTGC 1 cut(s) 283
Cac8I GCNNGC 3 cut(s) 141, 246, 918
CaiI CAGNNNCTG 3 cut(s) 116, 392, 428
Cfr13I GGNCC 1 cut(s) 592
Cfr42I CCGCGG 1 cut(s) 525
CseI GACGC 1 cut(s) 607
Csp6I GTAC 1 cut(s) 833
CspCI CAANNNNNGTGG 2 cut(s) 54, 89
CviAII CATG 3 cut(s) 374, 458, 694
CviQI GTAC 1 cut(s) 833
DdeI CTNAG 8 cut(s) 109, 180, 240, 342, 588, 667, 990, 998
DpnI GATC 4 cut(s) 63, 426, 447, 801
DpnII GATC 4 cut(s) 61, 424, 445, 799
EaeI YGGCCR 1 cut(s) 582
EciI GGCGGA 2 cut(s) 195, 456
Eco130I CCWWGG 2 cut(s) 29, 293
Eco24I GRGCYC 2 cut(s) 60, 954
Eco47I GGWCC 1 cut(s) 592
Eco88I CYCGRG 1 cut(s) 413
EcoRI GAATTC 1 cut(s) 689
EcoRII CCWGG 2 cut(s) 735, 886
EcoT14I CCWWGG 2 cut(s) 29, 293
EcoT38I GRGCYC 2 cut(s) 60, 954
ErhI CCWWGG 2 cut(s) 29, 293
FaeI CATG 3 cut(s) 377, 461, 697
FatI CATG 3 cut(s) 373, 457, 693
FauI CCCGC 1 cut(s) 136
FauNDI CATATG 2 cut(s) 304, 817
Fnu4HI GCNGC 2 cut(s) 378, 766
FokI GGATG 1 cut(s) 307
FriOI GRGCYC 2 cut(s) 60, 954
Fsp4HI GCNGC 2 cut(s) 378, 766
GluI GCNGC 2 cut(s) 378, 766
HaeIII GGCC 2 cut(s) 139, 584
HgaI GACGC 1 cut(s) 607
Hin1II CATG 3 cut(s) 377, 461, 697
HincII GTYRAC 1 cut(s) 823
HindII GTYRAC 1 cut(s) 823
HindIII AAGCTT 1 cut(s) 995
HinfI GANTC 4 cut(s) 236, 263, 883, 923
HphI GGTGA 3 cut(s) 264, 402, 647
Hpy166II GTNNAC 2 cut(s) 823, 1004
Hpy188I TCNGA 6 cut(s) 325, 345, 504, 670, 807, 949
Hpy188III TCNNGA 3 cut(s) 230, 428, 725
Hpy8I GTNNAC 2 cut(s) 823, 1004
Hpy99I CGWCG 1 cut(s) 623
HpyAV CCTTC 2 cut(s) 180, 412
HpyCH4III ACNGT 4 cut(s) 403, 436, 941, 1008
HpyCH4V TGCA 4 cut(s) 308, 377, 541, 658
HpyF10VI GCNNNNNNNGC 2 cut(s) 149, 530
HpyF3I CTNAG 8 cut(s) 109, 180, 240, 342, 588, 667, 990, 998
Hsp92II CATG 3 cut(s) 377, 461, 697
KspI CCGCGG 1 cut(s) 525
Kzo9I GATC 4 cut(s) 61, 424, 445, 799
LmnI GCTCC 4 cut(s) 190, 298, 538, 647
Lsp1109I GCAGC 2 cut(s) 389, 777
LweI GCATC 1 cut(s) 550
MaeIII GTNAC 1 cut(s) 622
MalI GATC 4 cut(s) 63, 426, 447, 801
MboI GATC 4 cut(s) 61, 424, 445, 799
MboII GAAGA 4 cut(s) 205, 517, 569, 698
MflI RGATCY 1 cut(s) 424
MhlI GDGCHC 2 cut(s) 60, 954
MlsI TGGCCA 1 cut(s) 584
MluCI AATT 3 cut(s) 689, 778, 847
MluNI TGGCCA 1 cut(s) 584
MlyI GAGTC 1 cut(s) 230
MmeI TCCRAC 1 cut(s) 380
Mox20I TGGCCA 1 cut(s) 584
MroXI GAANNNNTTC 1 cut(s) 330
MscI TGGCCA 1 cut(s) 584
Msp20I TGGCCA 1 cut(s) 584
MspA1I CMGCKG 1 cut(s) 524
MspR9I CCNGG 2 cut(s) 737, 888
MvaI CCWGG 2 cut(s) 737, 888
MvnI CGCG 1 cut(s) 524
MwoI GCNNNNNNNGC 2 cut(s) 149, 530
NdeI CATATG 2 cut(s) 304, 817
NdeII GATC 4 cut(s) 61, 424, 445, 799
NlaIII CATG 3 cut(s) 377, 461, 697
NlaIV GGNNCC 3 cut(s) 26, 186, 300
PaqCI CACCTGC 1 cut(s) 283
PdmI GAANNNNTTC 1 cut(s) 330
PfeI GAWTC 3 cut(s) 263, 883, 923
PkrI GCNGC 2 cut(s) 379, 767
PleI GAGTC 1 cut(s) 230
PpsI GAGTC 1 cut(s) 230
PsiI TTATAA 1 cut(s) 714
Psp6I CCWGG 2 cut(s) 735, 886
PspGI CCWGG 2 cut(s) 735, 886
PspN4I GGNNCC 3 cut(s) 26, 186, 300
PspPI GGNCC 1 cut(s) 592
PsrI GAACNNNNNNTAC 2 cut(s) 28, 60
PstNI CAGNNNCTG 3 cut(s) 116, 392, 428
PsuI RGATCY 1 cut(s) 424
RsaI GTAC 1 cut(s) 834
RsaNI GTAC 1 cut(s) 833
SacII CCGCGG 1 cut(s) 525
SatI GCNGC 2 cut(s) 378, 766
Sau3AI GATC 4 cut(s) 61, 424, 445, 799
Sau96I GGNCC 1 cut(s) 592
SchI GAGTC 1 cut(s) 230
ScrFI CCNGG 2 cut(s) 737, 888
SduI GDGCHC 2 cut(s) 60, 954
SfaNI GCATC 1 cut(s) 550
SfcI CTRYAG 1 cut(s) 393
Sfr303I CCGCGG 1 cut(s) 525
SgrBI CCGCGG 1 cut(s) 525
SinI GGWCC 1 cut(s) 592
SmlI CTYRAG 3 cut(s) 48, 228, 487
SmoI CTYRAG 3 cut(s) 48, 228, 487
Sse9I AATT 3 cut(s) 689, 778, 847
SsiI CCGC 7 cut(s) 143, 206, 360, 441, 522, 524, 706
StyD4I CCNGG 2 cut(s) 735, 886
StyI CCWWGG 2 cut(s) 29, 293
TaaI ACNGT 4 cut(s) 403, 436, 941, 1008
TaqI TCGA 2 cut(s) 783, 957
TasI AATT 3 cut(s) 689, 778, 847
TatI WGTACW 1 cut(s) 832
TfiI GAWTC 3 cut(s) 263, 883, 923
TscAI CASTG 3 cut(s) 78, 592, 1011
TseI GCWGC 2 cut(s) 377, 765
TspDTI ATGAA 3 cut(s) 504, 587, 682
TspGWI ACGGA 1 cut(s) 696
TspRI CASTG 3 cut(s) 78, 592, 1011
VpaK11BI GGWCC 1 cut(s) 592
XapI RAATTY 2 cut(s) 689, 778
XmnI GAANNNNTTC 1 cut(s) 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.