Rmu_sc0013354.1_g000012

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013354.1
OG0012084
Physical Location & Seq
Forward (+)
37556 .. 39328
1773 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013354.1_g000012.1.cds

Sequence Viewer

Length: 1773 bp
atggcagacaaaaggcgatcctttcgcttccggttcccttggcgtaatagtccccgttctaaagaagaaccagagccacgcccaacacctaaaacccaaaaccctgcccagtcaaccaccacagtagcccctgagaggccaccatttcggccagcaggaaaaactccggcaaagggctctccttcgcaagctcagaggccacaaaaaactgatcttccaccatctcgtgcagccagtgagtccccaaagactcaattcccgtctcgtttatctccatcaaagaactcacatcccaccactcaacaaaggtctcccccatcagctacctcgtctcaatctcaactattacaagaggaagcaatatctcagccacagaaacctcgacgaaaaatacaagtcatatctgaaactgattccagtgctgaggacagtactcctagagaaacaacctctcatactcatgaaacttcccctaagagtataaaggtatttgcttcatctgataaatcagattctgataccctcaatggacatcacaagcagctttcggaatcagatgcagagtcaaaagagcacaaagaagcagagaaagtagtgcaggtaccggcagtagaagaaaagaccaatgatgcaggttacacagaaccattgcaagaaagggtcactcaacttcctgctgcagcaagagactcgggaaatcaggccaaagacccacttggagatgcattgcaagcagaccagcgaaaggagaagcaagaacaggtcactgaacttcatgctggagcaatagacccaggaaatcacaccaaagacccacttggagttgcattgcaagaagatcagcaacacgagaagcaagaaagggtcgctgaacttcatgctgcagcaacagactcaggaaataacaccaaagaccaacttggagttgcatcgctagcagatcagcaacacgagaagcaagaaagggttgctgaacttcatactgcagcaacagactcaggaaatcacaccaaagaccaacttggagtcgcatcgcaagcagatcagcaacacaagaagcaagaaagggtcgctgaacttcatgctgcagcaacagactcaggaaatcacaccaaagacccacctggagctgcattgcaagcagatcagcaacaggagaagaaagaaaattttgacagaaaggagatgctggccaccaccagctctgataagaaacctatcaaaactgagaggagctcctcaagggtgtatattcgaaagatggttgcatcgactggggaacgacctcccccaaataaagaaatcagggaagatgtttccaaggttgataagctggccatcgggcagcaaatgcttgataaggcagttggtgctgtgaccttaactggcaaaaacagaggagcagtaatgctcttaagctcagaaccagaaaaacgagaagaaccagtccacatatgccgcggttacaagctcaatccagatgataatgaagctactactgatggagaggtaagcaatgaggaagaaattttcgaggaccagatattcaaaggagatcaacaatacatcaacagcaatgtccagagcatcaataactctattgtgtgcagtagttctgtcacggaaaggaatccaggtgttgctgttttttcttcaaacccaccagaatccatcgattcaaataaagaatcagactccctccaaacacacaaggctcaagtcatccaaactcctgctgataagcttactcatgaatccactgtaagacggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

590

Amino Acids

64.9

Weight (kDa)

6.07

Isoelectric Point (pI)

59.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012084)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G75260
fragaria_vesca FvH4_2g39641
malus_domestica MD08G1030100.v1.1 MD15G1025500.v1.1
prunus_persica Prupe.1G377800_v2.0.a1
pyrus_communis pycom08g02390 pycom15g02190
rosa_chinensis RchiOBHm_Chr6g0301251
rosa_laevigata RLG00000011267
rosa_multiflora Rmu_sc0013354.1_g000012
rosa_roxburghii Rroxscaffold_171G00441310 Rroxscaffold_7G00167040
rosa_rugosa Rorug06G0302700
rosa_samantha Rh6AG416100 Rh6BG422800 Rh6BG422900 Rh6CG430500 Rh6DG416100
rosa_wichuraiana Rw6G036030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 589, 623
Acc65I GGTACC 1 cut(s) 601
AccB1I GGYRCC 1 cut(s) 601
AccII CGCG 1 cut(s) 1461
AciI CCGC 2 cut(s) 1459, 1461
AclWI GGATC 1 cut(s) 12
AcoI YGGCCR 3 cut(s) 149, 1191, 1335
AcsI RAATTY 2 cut(s) 1168, 1527
AfaI GTAC 2 cut(s) 433, 603
AfiI CCNNNNNNNGG 3 cut(s) 135, 173, 745
AflII CTTAAG 1 cut(s) 1414
AgsI TTSAA 3 cut(s) 1549, 1656, 1680
AjnI CCWGG 3 cut(s) 793, 1123, 1633
Alw21I GWGCWC 2 cut(s) 576, 1238
Alw26I GTCTC 4 cut(s) 267, 315, 336, 681
AlwI GGATC 1 cut(s) 12
AlwNI CAGNNNCTG 1 cut(s) 515
Ama87I CYCGRG 1 cut(s) 691
AoxI GGCC 6 cut(s) 137, 149, 197, 702, 1191, 1335
ApoI RAATTY 2 cut(s) 1168, 1527
Asp718I GGTACC 1 cut(s) 601
AspS9I GGNCC 1 cut(s) 1537
AsuII TTCGAA 1 cut(s) 1255
AsuNHI GCTAGC 1 cut(s) 934
AvaI CYCGRG 1 cut(s) 691
AvaII GGWCC 1 cut(s) 1537
BalI TGGCCA 2 cut(s) 1193, 1337
BanI GGYRCC 1 cut(s) 601
BanII GRGCYC 2 cut(s) 179, 1238
BauI CACGAG 3 cut(s) 225, 848, 950
Bbv12I GWGCWC 2 cut(s) 576, 1238
BbvCI CCTCAGC 1 cut(s) 423
BccI CCATC 7 cut(s) 229, 283, 325, 1255, 1346, 1496, 1679
BcgI CGANNNNNNTGC 2 cut(s) 672, 706
BciT130I CCWGG 3 cut(s) 795, 1125, 1635
BcoDI GTCTC 4 cut(s) 267, 315, 336, 681
BfaI CTAG 2 cut(s) 438, 935
BfmI CTRYAG 4 cut(s) 678, 882, 984, 1086
BfrI CTTAAG 1 cut(s) 1414
BfuAI ACCTGC 2 cut(s) 589, 623
BmcAI AGTACT 1 cut(s) 433
Bme1390I CCNGG 3 cut(s) 795, 1125, 1635
Bme18I GGWCC 1 cut(s) 1537
BmeT110I CYCGRG 1 cut(s) 691
BmgT120I GGNCC 1 cut(s) 1537
BmiI GGNNCC 2 cut(s) 35, 603
BmrFI CCNGG 3 cut(s) 795, 1125, 1635
BmrI ACTGGG 2 cut(s) 103, 1284
BmsI GCATC 8 cut(s) 547, 619, 712, 938, 1040, 1176, 1277, 1596
BmtI GCTAGC 1 cut(s) 938
BmuI ACTGGG 2 cut(s) 103, 1284
BplI GAGNNNNNCTC 2 cut(s) 1220, 1252
BpmI CTGGAG 2 cut(s) 801, 1146
Bpu10I CCTNAGC 1 cut(s) 423
Bpu14I TTCGAA 1 cut(s) 1255
BpuEI CTTGAG 2 cut(s) 1225, 1701
Bsa29I ATCGAT 1 cut(s) 1674
BsaI GGTCTC 1 cut(s) 315
BsaJI CCNNGG 4 cut(s) 38, 793, 1320, 1459
BsaWI WCCGGW 1 cut(s) 30
Bsc4I CCNNNNNNNGG 3 cut(s) 135, 173, 745
Bse118I RCCGGY 1 cut(s) 604
Bse1I ACTGG 6 cut(s) 109, 234, 417, 1279, 1390, 1445
Bse3DI GCAATG 6 cut(s) 647, 725, 827, 1133, 1522, 1582
BseBI CCWGG 3 cut(s) 795, 1125, 1635
BseCI ATCGAT 1 cut(s) 1674
BseDI CCNNGG 4 cut(s) 38, 793, 1320, 1459
BseGI GGATG 2 cut(s) 289, 1722
BseLI CCNNNNNNNGG 3 cut(s) 135, 173, 745
BseMI GCAATG 6 cut(s) 647, 725, 827, 1133, 1522, 1582
BseMII CTCAG 9 cut(s) 123, 206, 380, 414, 909, 1011, 1113, 1218, 1434
BseNI ACTGG 6 cut(s) 109, 234, 417, 1279, 1390, 1445
BseRI GAGGAG 3 cut(s) 1228, 1246, 1413
BsgI GTGCAG 3 cut(s) 249, 617, 1627
Bsh1236I CGCG 1 cut(s) 1461
BshFI GGCC 6 cut(s) 139, 151, 199, 704, 1193, 1337
BshNI GGYRCC 1 cut(s) 601
BshVI ATCGAT 1 cut(s) 1674
BsiHKAI GWGCWC 2 cut(s) 576, 1238
BsiHKCI CYCGRG 1 cut(s) 691
BsiSI CCGG 3 cut(s) 31, 167, 605
BslFI GGGAC 2 cut(s) 36, 226
BslI CCNNNNNNNGG 3 cut(s) 135, 173, 745
BsmAI GTCTC 4 cut(s) 267, 315, 336, 681
BsmBI CGTCTC 2 cut(s) 267, 336
BsmFI GGGAC 2 cut(s) 36, 226
BsnI GGCC 6 cut(s) 139, 151, 199, 704, 1193, 1337
Bso31I GGTCTC 1 cut(s) 315
BsoBI CYCGRG 1 cut(s) 691
Bsp119I TTCGAA 1 cut(s) 1255
Bsp1286I GDGCHC 3 cut(s) 179, 576, 1238
Bsp143I GATC 7 cut(s) 17, 211, 838, 940, 1042, 1144, 1555
BspACI CCGC 2 cut(s) 1459, 1461
BspANI GGCC 6 cut(s) 139, 151, 199, 704, 1193, 1337
BspCNI CTCAG 9 cut(s) 124, 205, 379, 415, 908, 1010, 1112, 1219, 1433
BspDI ATCGAT 1 cut(s) 1674
BspFNI CGCG 1 cut(s) 1461
BspHI TCATGA 2 cut(s) 460, 1750
BspLI GGNNCC 2 cut(s) 35, 603
BspMAI CTGCAG 4 cut(s) 682, 886, 988, 1090
BspMI ACCTGC 2 cut(s) 589, 623
BspOI GCTAGC 1 cut(s) 938
BspPI GGATC 1 cut(s) 12
BspT104I TTCGAA 1 cut(s) 1255
BspT107I GGYRCC 1 cut(s) 601
BspTI CTTAAG 1 cut(s) 1414
BspTNI GGTCTC 1 cut(s) 315
BsrDI GCAATG 6 cut(s) 647, 725, 827, 1133, 1522, 1582
BsrFI RCCGGY 1 cut(s) 604
BsrI ACTGG 6 cut(s) 109, 234, 417, 1279, 1390, 1445
BssAI RCCGGY 1 cut(s) 604
BssECI CCNNGG 4 cut(s) 38, 793, 1320, 1459
BssMI GATC 7 cut(s) 17, 211, 838, 940, 1042, 1144, 1555
BssSI CACGAG 3 cut(s) 225, 848, 950
BssT1I CCWWGG 2 cut(s) 38, 1320
Bst2BI CACGAG 3 cut(s) 225, 848, 950
Bst2UI CCWGG 3 cut(s) 795, 1125, 1635
Bst4CI ACNGT 4 cut(s) 124, 431, 1762, 1770
BstAFI CTTAAG 1 cut(s) 1414
BstAPI GCANNNNNTGC 2 cut(s) 1351, 1370
BstBI TTCGAA 1 cut(s) 1255
BstC8I GCNNGC 8 cut(s) 153, 189, 732, 936, 1038, 1140, 1191, 1335
BstDSI CCRYGG 1 cut(s) 1459
BstF5I GGATG 2 cut(s) 289, 1722
BstFNI CGCG 1 cut(s) 1461
BstKTI GATC 7 cut(s) 20, 214, 841, 943, 1045, 1147, 1558
BstMAI GTCTC 4 cut(s) 267, 315, 336, 681
BstMBI GATC 7 cut(s) 17, 211, 838, 940, 1042, 1144, 1555
BstMWI GCNNNNNNNGC 6 cut(s) 731, 935, 1037, 1139, 1351, 1370
BstNI CCWGG 3 cut(s) 795, 1125, 1635
BstSCI CCNGG 3 cut(s) 793, 1123, 1633
BstSFI CTRYAG 4 cut(s) 678, 882, 984, 1086
BstUI CGCG 1 cut(s) 1461
Bsu15I ATCGAT 1 cut(s) 1674
BsuRI GGCC 6 cut(s) 139, 151, 199, 704, 1193, 1337
BsuTUI ATCGAT 1 cut(s) 1674
BtgI CCRYGG 1 cut(s) 1459
BtgZI GCGATG 2 cut(s) 915, 1017
BtsCI GGATG 2 cut(s) 289, 1722
BtsIMutI CAGTG 4 cut(s) 241, 424, 765, 1758
BveI ACCTGC 2 cut(s) 589, 623
Cac8I GCNNGC 8 cut(s) 153, 189, 732, 936, 1038, 1140, 1191, 1335
CaiI CAGNNNCTG 1 cut(s) 515
CciI TCATGA 2 cut(s) 460, 1750
Cfr10I RCCGGY 1 cut(s) 604
Cfr13I GGNCC 1 cut(s) 1537
Cfr42I CCGCGG 1 cut(s) 1462
ClaI ATCGAT 1 cut(s) 1674
Csp6I GTAC 2 cut(s) 432, 602
CviAII CATG 5 cut(s) 461, 776, 878, 1082, 1751
CviQI GTAC 2 cut(s) 432, 602
DpnI GATC 7 cut(s) 19, 213, 840, 942, 1044, 1146, 1557
DpnII GATC 7 cut(s) 17, 211, 838, 940, 1042, 1144, 1555
EaeI YGGCCR 3 cut(s) 149, 1191, 1335
Ecl136II GAGCTC 1 cut(s) 1236
Eco130I CCWWGG 2 cut(s) 38, 1320
Eco24I GRGCYC 2 cut(s) 179, 1238
Eco31I GGTCTC 1 cut(s) 315
Eco47I GGWCC 1 cut(s) 1537
Eco53kI GAGCTC 1 cut(s) 1236
Eco88I CYCGRG 1 cut(s) 691
EcoICRI GAGCTC 1 cut(s) 1236
EcoRII CCWGG 3 cut(s) 793, 1123, 1633
EcoT14I CCWWGG 2 cut(s) 38, 1320
EcoT22I ATGCAT 1 cut(s) 727
EcoT38I GRGCYC 2 cut(s) 179, 1238
ErhI CCWWGG 2 cut(s) 38, 1320
Esp3I CGTCTC 2 cut(s) 267, 336
FaeI CATG 5 cut(s) 464, 779, 881, 1085, 1754
FalI AAGNNNNNCTT 8 cut(s) 699, 731, 801, 833, 903, 935, 1005, 1037
FaqI GGGAC 2 cut(s) 36, 226
FatI CATG 5 cut(s) 460, 775, 877, 1081, 1750
FauNDI CATATG 1 cut(s) 1454
FokI GGATG 2 cut(s) 276, 1709
FriOI GRGCYC 2 cut(s) 179, 1238
FspBI CTAG 2 cut(s) 438, 935
GsuI CTGGAG 2 cut(s) 801, 1146
HaeIII GGCC 6 cut(s) 139, 151, 199, 704, 1193, 1337
HapII CCGG 3 cut(s) 31, 167, 605
Hin1II CATG 5 cut(s) 464, 779, 881, 1085, 1754
HincII GTYRAC 1 cut(s) 114
HindII GTYRAC 1 cut(s) 114
HindIII AAGCTT 1 cut(s) 1742
HpaII CCGG 3 cut(s) 31, 167, 605
Hpy166II GTNNAC 2 cut(s) 114, 1450
Hpy188III TCNNGA 8 cut(s) 461, 693, 897, 999, 1101, 1478, 1582, 1751
Hpy8I GTNNAC 2 cut(s) 114, 1450
Hpy99I CGWCG 1 cut(s) 387
HpyAV CCTTC 1 cut(s) 192
HpyCH4III ACNGT 4 cut(s) 124, 431, 1762, 1770
HpyF10VI GCNNNNNNNGC 6 cut(s) 731, 935, 1037, 1139, 1351, 1370
Hsp92II CATG 5 cut(s) 464, 779, 881, 1085, 1754
KpnI GGTACC 1 cut(s) 605
KspI CCGCGG 1 cut(s) 1462
Kzo9I GATC 7 cut(s) 17, 211, 838, 940, 1042, 1144, 1555
LmnI GCTCC 5 cut(s) 782, 1127, 1233, 1241, 1400
LweI GCATC 8 cut(s) 547, 619, 712, 938, 1040, 1176, 1277, 1596
MaeI CTAG 2 cut(s) 438, 935
MaeIII GTNAC 6 cut(s) 635, 661, 763, 1375, 1463, 1618
MalI GATC 7 cut(s) 19, 213, 840, 942, 1044, 1146, 1557
MboI GATC 7 cut(s) 17, 211, 838, 940, 1042, 1144, 1555
MboII GAAGA 9 cut(s) 77, 206, 626, 848, 1171, 1322, 1451, 1535, 1644
MhlI GDGCHC 3 cut(s) 179, 576, 1238
MlsI TGGCCA 2 cut(s) 1193, 1337
MluCI AATT 3 cut(s) 254, 1168, 1527
MluNI TGGCCA 2 cut(s) 1193, 1337
MlyI GAGTC 9 cut(s) 244, 248, 572, 683, 887, 989, 1035, 1091, 1688
Mox20I TGGCCA 2 cut(s) 1193, 1337
Mph1103I ATGCAT 1 cut(s) 727
MscI TGGCCA 2 cut(s) 1193, 1337
MseI TTAA 2 cut(s) 1382, 1415
MslI CAYNNNNRTG 1 cut(s) 459
Msp20I TGGCCA 2 cut(s) 1193, 1337
MspA1I CMGCKG 1 cut(s) 1461
MspCI CTTAAG 1 cut(s) 1414
MspI CCGG 3 cut(s) 31, 167, 605
MspR9I CCNGG 3 cut(s) 795, 1125, 1635
MvaI CCWGG 3 cut(s) 795, 1125, 1635
MvnI CGCG 1 cut(s) 1461
MwoI GCNNNNNNNGC 6 cut(s) 731, 935, 1037, 1139, 1351, 1370
NdeI CATATG 1 cut(s) 1454
NdeII GATC 7 cut(s) 17, 211, 838, 940, 1042, 1144, 1555
NheI GCTAGC 1 cut(s) 934
NlaIII CATG 5 cut(s) 464, 779, 881, 1085, 1754
NlaIV GGNNCC 2 cut(s) 35, 603
NmuCI GTSAC 4 cut(s) 661, 763, 1375, 1618
NsiI ATGCAT 1 cut(s) 727
NspV TTCGAA 1 cut(s) 1255
PagI TCATGA 2 cut(s) 460, 1750
PfeI GAWTC 8 cut(s) 413, 512, 551, 1630, 1667, 1676, 1688, 1754
PleI GAGTC 9 cut(s) 244, 247, 571, 683, 887, 989, 1034, 1091, 1688
PpsI GAGTC 9 cut(s) 244, 247, 571, 683, 887, 989, 1034, 1091, 1688
Psp124BI GAGCTC 1 cut(s) 1238
Psp6I CCWGG 3 cut(s) 793, 1123, 1633
PspGI CCWGG 3 cut(s) 793, 1123, 1633
PspN4I GGNNCC 2 cut(s) 35, 603
PspPI GGNCC 1 cut(s) 1537
PstI CTGCAG 4 cut(s) 682, 886, 988, 1090
PstNI CAGNNNCTG 1 cut(s) 515
RsaI GTAC 2 cut(s) 433, 603
RsaNI GTAC 2 cut(s) 432, 602
RseI CAYNNNNRTG 1 cut(s) 459
SacI GAGCTC 1 cut(s) 1238
SacII CCGCGG 1 cut(s) 1462
SaqAI TTAA 2 cut(s) 1382, 1415
Sau3AI GATC 7 cut(s) 17, 211, 838, 940, 1042, 1144, 1555
Sau96I GGNCC 1 cut(s) 1537
ScaI AGTACT 1 cut(s) 433
SchI GAGTC 9 cut(s) 244, 248, 572, 683, 887, 989, 1035, 1091, 1688
ScrFI CCNGG 3 cut(s) 795, 1125, 1635
SduI GDGCHC 3 cut(s) 179, 576, 1238
SfaNI GCATC 8 cut(s) 547, 619, 712, 938, 1040, 1176, 1277, 1596
SfcI CTRYAG 4 cut(s) 678, 882, 984, 1086
Sfr303I CCGCGG 1 cut(s) 1462
SfuI TTCGAA 1 cut(s) 1255
SgrBI CCGCGG 1 cut(s) 1462
SinI GGWCC 1 cut(s) 1537
SmiMI CAYNNNNRTG 1 cut(s) 459
SmlI CTYRAG 3 cut(s) 1240, 1414, 1716
SmoI CTYRAG 3 cut(s) 1240, 1414, 1716
Sse9I AATT 3 cut(s) 254, 1168, 1527
SsiI CCGC 2 cut(s) 1459, 1461
SspMI CTAG 2 cut(s) 438, 935
SstI GAGCTC 1 cut(s) 1238
StyD4I CCNGG 3 cut(s) 793, 1123, 1633
StyI CCWWGG 2 cut(s) 38, 1320
TaaI ACNGT 4 cut(s) 124, 431, 1762, 1770
TaqI TCGA 5 cut(s) 382, 1255, 1271, 1533, 1674
TasI AATT 3 cut(s) 254, 1168, 1527
TatI WGTACW 1 cut(s) 431
TauI GCSGC 1 cut(s) 1461
TfiI GAWTC 8 cut(s) 413, 512, 551, 1630, 1667, 1676, 1688, 1754
Tru1I TTAA 2 cut(s) 1382, 1415
Tru9I TTAA 2 cut(s) 1382, 1415
TscAI CASTG 4 cut(s) 241, 424, 772, 1765
TseFI GTSAC 4 cut(s) 661, 763, 1375, 1618
Tsp45I GTSAC 4 cut(s) 661, 763, 1375, 1618
TspDTI ATGAA 8 cut(s) 477, 486, 764, 866, 968, 1070, 1503, 1767
TspGWI ACGGA 1 cut(s) 1637
TspRI CASTG 4 cut(s) 241, 424, 772, 1765
Vha464I CTTAAG 1 cut(s) 1414
VpaK11BI GGWCC 1 cut(s) 1537
XapI RAATTY 2 cut(s) 1168, 1527
XspI CTAG 2 cut(s) 438, 935
ZrmI AGTACT 1 cut(s) 433
Zsp2I ATGCAT 1 cut(s) 727
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.