Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003294

Physical Location & Seq

Genomic Coordinates Forward (+)

28400439 .. 28402355

Gene Structure 1917 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G75630.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGCTTCTTCAGGTTTCAGCGGCGATGAAACTGCGCCTTTCTTCGGATTCCTCGGCGCCGCCGCTGCGCTCGTTTTCTCCTGTATGGGAGCAGCGTACGGGACGGCGAAGAGTGGAGTTGGAGTTGCGTCGATGGGAGTGATGAGACCTGAACTTGTTATGAAATCGATTGTTCCTGTTGTCATGGCTGGTGTGTTAGGTATTTATGGTTTGATCATCGCTGTTATCATCAGTACTGGGATTAACCCCAAGGCCAAGTCTTATTACCTATTCGATGGCTATGCTCATCTCTCTTCTGGGCTAGCTTGTGGTCTTGCTGGTCTCTCTGCTGGTATGGCTATTGGAATCGTCGGTGATGCTGGTGTTAGAGCGAATGCGCAACAACCGAAGCTGTTTGTGGGAATGATTCTGATTCTCATCTTTGCGGAAGCGCTTGCACTGTATGGTCTCATTGTTGGTATCATCCTCTCATCTCGAGCTGGTCAGTCTAGAGCTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04142 ko04145 ko04721 ko04966 ko05110 ko05120 ko05152 ko05323 map00190 map01100 map04142 map04145 map04721 map04966 map05110 map05120 map05152 map05323

Pfam Domains

Protein Families

ATP-synt_C

Protein Analysis

166

Amino Acids

16.69

Weight (kDa)

8.62

Isoelectric Point (pI)

31.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP-synt_C	PF00137	18 - 77	5.8e-15	ATP synthase subunit C
ATP-synt_C	PF00137	155 - 190	1e-09	ATP synthase subunit C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003294)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75630 AT1G75630
fragaria_vesca	FvH4_2g27050
malus_domestica	MD02G1134600.v1.1 MD08G1017400.v1.1 MD08G1161900.v1.1 MD15G1016300.v1.1 MD15G1247900.v1.1 MD15G1347200.v1.1
prunus_persica	Prupe.1G370100_v2.0.a1 Prupe.1G370100_v2.0.a1 Prupe.1G494900_v2.0.a1 Prupe.7G166200_v2.0.a1 Prupe.8G083200_v2.0.a1
pyrus_communis	pycom02g10620 pycom08g01520 pycom15g01430 pycom15g21770 pycom15g31150
rosa_chinensis	RchiOBHm_Chr6g0295951 RchiOBHm_Chr6g0302211
rosa_laevigata	RLG00000011753
rosa_multiflora	Rmu_sc0000529.1_g000004 Rmu_sc0003633.1_g000001
rosa_roxburghii	Rroxscaffold_7G00165990
rosa_rugosa	Rorug06G0255300 Rorug06G0313100
rosa_samantha	Rh6AG369000 Rh6BG376800 Rh6BG476700 Rh6CG382900 Rh6CG438500 Rh6DG369500 Rh6DG425500
rosa_wichuraiana	Rw6G032180 Rw6G036870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	378
AccB1I	GGYRCC	1 cut(s)	56
AciI	CCGC	4 cut(s)	21, 60, 63, 425
AcyI	GRCGYC	1 cut(s)	57
AfaI	GTAC	2 cut(s)	98, 235
AfeI	AGCGCT	1 cut(s)	432
AfiI	CCNNNNNNNGG	1 cut(s)	44
AluBI	AGCT	4 cut(s)	305, 391, 479, 494
AluI	AGCT	4 cut(s)	305, 391, 479, 494
Alw26I	GTCTC	3 cut(s)	139, 326, 452
Ama87I	CYCGRG	1 cut(s)	474
Aor51HI	AGCGCT	1 cut(s)	432
AoxI	GGCC	1 cut(s)	252
ApeKI	GCWGC	2 cut(s)	65, 92
AspLEI	GCGC	5 cut(s)	37, 59, 70, 379, 433
AsuHPI	GGTGA	1 cut(s)	365
AsuNHI	GCTAGC	1 cut(s)	301
AvaI	CYCGRG	1 cut(s)	474
BanI	GGYRCC	1 cut(s)	56
BbvI	GCAGC	2 cut(s)	52, 104
BccI	CCATC	2 cut(s)	127, 269
BceAI	ACGGC	1 cut(s)	120
BcgI	CGANNNNNNTGC	4 cut(s)	14, 48, 263, 297
BclI	TGATCA	1 cut(s)	213
BcoDI	GTCTC	3 cut(s)	139, 326, 452
BfaI	CTAG	2 cut(s)	302, 489
BfoI	RGCGCY	2 cut(s)	60, 434
BisI	GCNGC	5 cut(s)	22, 60, 63, 66, 93
BlsI	GCNGC	5 cut(s)	23, 61, 64, 67, 94
BmcAI	AGTACT	1 cut(s)	235
BmeT110I	CYCGRG	1 cut(s)	474
BmiI	GGNNCC	1 cut(s)	58
BmrI	ACTGGG	1 cut(s)	246
BmsI	GCATC	1 cut(s)	346
BmtI	GCTAGC	1 cut(s)	305
BmuI	ACTGGG	1 cut(s)	246
Bsa29I	ATCGAT	1 cut(s)	167
BsaBI	GATNNNNATC	1 cut(s)	416
BsaHI	GRCGYC	1 cut(s)	57
BsaI	GGTCTC	3 cut(s)	139, 326, 452
BsaJI	CCNNGG	2 cut(s)	52, 249
BsaXI	ACNNNNNCTCC	2 cut(s)	108, 138
Bsc4I	CCNNNNNNNGG	1 cut(s)	44
Bse1I	ACTGG	1 cut(s)	241
Bse8I	GATNNNNATC	1 cut(s)	416
BseCI	ATCGAT	1 cut(s)	167
BseDI	CCNNGG	2 cut(s)	52, 249
BseGI	GGATG	1 cut(s)	462
BseJI	GATNNNNATC	1 cut(s)	416
BseLI	CCNNNNNNNGG	1 cut(s)	44
BseMII	CTCAG	1 cut(s)	486
BseNI	ACTGG	1 cut(s)	241
BseXI	GCAGC	2 cut(s)	52, 104
BshFI	GGCC	1 cut(s)	254
BshNI	GGYRCC	1 cut(s)	56
BshVI	ATCGAT	1 cut(s)	167
BsiHKCI	CYCGRG	1 cut(s)	474
BsiWI	CGTACG	1 cut(s)	96
BslFI	GGGAC	1 cut(s)	115
BslI	CCNNNNNNNGG	1 cut(s)	44
BsmAI	GTCTC	3 cut(s)	139, 326, 452
BsmFI	GGGAC	1 cut(s)	115
BsmI	GAATGC	1 cut(s)	379
BsnI	GGCC	1 cut(s)	254
Bso31I	GGTCTC	3 cut(s)	139, 326, 452
BsoBI	CYCGRG	1 cut(s)	474
Bsp143I	GATC	1 cut(s)	213
BspACI	CCGC	4 cut(s)	21, 60, 63, 425
BspANI	GGCC	1 cut(s)	254
BspCNI	CTCAG	1 cut(s)	487
BspDI	ATCGAT	1 cut(s)	167
BspLI	GGNNCC	1 cut(s)	58
BspOI	GCTAGC	1 cut(s)	305
BspT107I	GGYRCC	1 cut(s)	56
BspTNI	GGTCTC	3 cut(s)	139, 326, 452
BsrI	ACTGG	1 cut(s)	241
BssECI	CCNNGG	2 cut(s)	52, 249
BssMI	GATC	1 cut(s)	213
BssNI	GRCGYC	1 cut(s)	57
BssT1I	CCWWGG	1 cut(s)	249
Bst4CI	ACNGT	1 cut(s)	441
Bst6I	CTCTTC	2 cut(s)	104, 298
BstACI	GRCGYC	1 cut(s)	57
BstC8I	GCNNGC	2 cut(s)	303, 435
BstDEI	CTNAG	1 cut(s)	495
BstF5I	GGATG	1 cut(s)	462
BstH2I	RGCGCY	2 cut(s)	60, 434
BstHHI	GCGC	5 cut(s)	37, 59, 70, 379, 433
BstKTI	GATC	1 cut(s)	216
BstMAI	GTCTC	3 cut(s)	139, 326, 452
BstMBI	GATC	1 cut(s)	213
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 335
BstV1I	GCAGC	2 cut(s)	52, 104
Bsu15I	ATCGAT	1 cut(s)	167
BsuRI	GGCC	1 cut(s)	254
BsuTUI	ATCGAT	1 cut(s)	167
BtgZI	GCGATG	2 cut(s)	39, 202
BtsCI	GGATG	1 cut(s)	462
BtsIMutI	CAGTG	1 cut(s)	437
Cac8I	GCNNGC	2 cut(s)	303, 435
CfoI	GCGC	5 cut(s)	37, 59, 70, 379, 433
ClaI	ATCGAT	1 cut(s)	167
CseI	GACGC	1 cut(s)	117
Csp6I	GTAC	2 cut(s)	97, 234
CviAII	CATG	1 cut(s)	184
CviQI	GTAC	2 cut(s)	97, 234
DdeI	CTNAG	1 cut(s)	495
DinI	GGCGCC	1 cut(s)	58
DpnI	GATC	1 cut(s)	215
DpnII	GATC	1 cut(s)	213
Eam1104I	CTCTTC	2 cut(s)	104, 298
EarI	CTCTTC	2 cut(s)	104, 298
Eco130I	CCWWGG	1 cut(s)	249
Eco31I	GGTCTC	3 cut(s)	139, 326, 452
Eco47III	AGCGCT	1 cut(s)	432
Eco88I	CYCGRG	1 cut(s)	474
EcoT14I	CCWWGG	1 cut(s)	249
EgeI	GGCGCC	1 cut(s)	58
EheI	GGCGCC	1 cut(s)	58
ErhI	CCWWGG	1 cut(s)	249
FaeI	CATG	1 cut(s)	187
FaiI	YATR	7 cut(s)	86, 161, 185, 207, 282, 335, 444
FaqI	GGGAC	1 cut(s)	115
FatI	CATG	1 cut(s)	183
FbaI	TGATCA	1 cut(s)	213
Fnu4HI	GCNGC	5 cut(s)	22, 60, 63, 66, 93
FokI	GGATG	1 cut(s)	449
Fsp4HI	GCNGC	5 cut(s)	22, 60, 63, 66, 93
FspBI	CTAG	2 cut(s)	302, 489
FspI	TGCGCA	1 cut(s)	378
GlaI	GCGC	5 cut(s)	36, 58, 69, 378, 432
GluI	GCNGC	5 cut(s)	22, 60, 63, 66, 93
HaeII	RGCGCY	2 cut(s)	60, 434
HaeIII	GGCC	1 cut(s)	254
HgaI	GACGC	1 cut(s)	117
HhaI	GCGC	5 cut(s)	37, 59, 70, 379, 433
Hin1I	GRCGYC	1 cut(s)	57
Hin1II	CATG	1 cut(s)	187
Hin6I	GCGC	5 cut(s)	35, 57, 68, 377, 431
HinP1I	GCGC	5 cut(s)	35, 57, 68, 377, 431
HinfI	GANTC	4 cut(s)	48, 345, 406, 412
HphI	GGTGA	1 cut(s)	365
Hpy188I	TCNGA	2 cut(s)	47, 411
Hpy188III	TCNNGA	2 cut(s)	474, 489
Hpy99I	CGWCG	2 cut(s)	133, 353
HpyCH4III	ACNGT	1 cut(s)	441
HpyCH4V	TGCA	1 cut(s)	437
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 335
HpyF3I	CTNAG	1 cut(s)	495
Hsp92I	GRCGYC	1 cut(s)	57
Hsp92II	CATG	1 cut(s)	187
HspAI	GCGC	5 cut(s)	35, 57, 68, 377, 431
KasI	GGCGCC	1 cut(s)	56
Ksp22I	TGATCA	1 cut(s)	213
Kzo9I	GATC	1 cut(s)	213
LmnI	GCTCC	1 cut(s)	89
Lsp1109I	GCAGC	2 cut(s)	52, 104
LweI	GCATC	1 cut(s)	346
MaeI	CTAG	2 cut(s)	302, 489
MalI	GATC	1 cut(s)	215
MboI	GATC	1 cut(s)	213
MboII	GAAGA	3 cut(s)	34, 121, 285
Mly113I	GGCGCC	1 cut(s)	57
MmeI	TCCRAC	1 cut(s)	100
MnlI	CCTC	2 cut(s)	62, 476
MseI	TTAA	1 cut(s)	243
MspA1I	CMGCKG	2 cut(s)	21, 65
Mva1269I	GAATGC	1 cut(s)	379
MwoI	GCNNNNNNNGC	2 cut(s)	65, 335
NarI	GGCGCC	1 cut(s)	57
NdeII	GATC	1 cut(s)	213
NheI	GCTAGC	1 cut(s)	301
NlaIII	CATG	1 cut(s)	187
NlaIV	GGNNCC	1 cut(s)	58
NmeAIII	GCCGAG	1 cut(s)	33
NsbI	TGCGCA	1 cut(s)	378
PaeR7I	CTCGAG	1 cut(s)	474
PctI	GAATGC	1 cut(s)	379
PfeI	GAWTC	4 cut(s)	48, 345, 406, 412
Pfl23II	CGTACG	1 cut(s)	96
PkrI	GCNGC	5 cut(s)	23, 61, 64, 67, 94
PluTI	GGCGCC	1 cut(s)	60
PspLI	CGTACG	1 cut(s)	96
PspN4I	GGNNCC	1 cut(s)	58
RsaI	GTAC	2 cut(s)	98, 235
RsaNI	GTAC	2 cut(s)	97, 234
SaqAI	TTAA	1 cut(s)	243
SatI	GCNGC	5 cut(s)	22, 60, 63, 66, 93
Sau3AI	GATC	1 cut(s)	213
ScaI	AGTACT	1 cut(s)	235
SetI	ASST	8 cut(s)	16, 151, 202, 270, 307, 393, 481, 496
SfaNI	GCATC	1 cut(s)	346
SfoI	GGCGCC	1 cut(s)	58
Sfr274I	CTCGAG	1 cut(s)	474
SlaI	CTCGAG	1 cut(s)	474
SmlI	CTYRAG	1 cut(s)	474
SmoI	CTYRAG	1 cut(s)	474
SsiI	CCGC	4 cut(s)	21, 60, 63, 425
SspDI	GGCGCC	1 cut(s)	56
SspMI	CTAG	2 cut(s)	302, 489
StyI	CCWWGG	1 cut(s)	249
TaaI	ACNGT	1 cut(s)	441
TaqI	TCGA	4 cut(s)	131, 167, 273, 475
TatI	WGTACW	1 cut(s)	233
TauI	GCSGC	3 cut(s)	24, 62, 65
TfiI	GAWTC	4 cut(s)	48, 345, 406, 412
Tru1I	TTAA	1 cut(s)	243
Tru9I	TTAA	1 cut(s)	243
TscAI	CASTG	1 cut(s)	444
TseI	GCWGC	2 cut(s)	65, 92
TspDTI	ATGAA	2 cut(s)	42, 176
TspRI	CASTG	1 cut(s)	444
XbaI	TCTAGA	1 cut(s)	488
XhoI	CTCGAG	1 cut(s)	474
XspI	CTAG	2 cut(s)	302, 489
ZrmI	AGTACT	1 cut(s)	235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.