Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0003294

Physical Location & Seq

Genomic Coordinates Forward (+)

961604 .. 963189

Gene Structure 1586 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1016300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGTCTTCTTCAACCTTCAGTGGCGATGAAACGGCACCGTTCTTCGGGTTCCTCGGCGCCGCCGCGGCCCTCGTCTTCTCCTGTATGGGAGCTGCATATGGGACGGCGAAGAGCGGAGTAGGAGTGGCGTCGATGGGAGTGATGAGGCCGGAGCTGGTGATGAAGTCGATCGTGCCGGTAGTTATGGCGGGAGTGTTGGGTATTTACGGGCTCATTATCGCCGTCATCATCAGTACCGGTATCAACCCCAAGGCTAAGTCCTATTACCTTTTCGATGGCTATGCTCATCTTTCCTCTGGTCTAGCTTGCGGCCTTGCCGGTCTATCTGCCGGTATGGCTATTGGCATTGTCGGTGATGCCGGTGTTAGAGCCAATGCACAACAGCCAAAGCTTTTCGTTGGGATGATCCTCATTCTCATTTTTGCTGAAGCACTGGCACTGTACGGTCTGATTGTTGGTATCATTCTCTCTTCCCGATCGGGTCAGTCAAGAGCTGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000220 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006885 GO:0007035 GO:0008150 GO:0008324 GO:0009987 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015672 GO:0016020 GO:0016021 GO:0016462 GO:0016469 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019725 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030003 GO:0030004 GO:0030641 GO:0031090 GO:0031224 GO:0032991 GO:0033176 GO:0033177 GO:0033179 GO:0034220 GO:0036442 GO:0042592 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044769 GO:0045851 GO:0046961 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051452 GO:0051453 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098796 GO:0098805 GO:0099131 GO:0099132 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04142 ko04145 ko04721 ko04966 ko05110 ko05120 ko05152 ko05323 map00190 map01100 map04142 map04145 map04721 map04966 map05110 map05120 map05152 map05323

Pfam Domains

Protein Families

ATP-synt_C

Protein Analysis

167

Amino Acids

16.75

Weight (kDa)

8.62

Isoelectric Point (pI)

37.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP-synt_C	PF00137	18 - 77	3.9e-15	ATP synthase subunit C
ATP-synt_C	PF00137	98 - 156	3.1e-18	ATP synthase subunit C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003294)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75630 AT1G75630
fragaria_vesca	FvH4_2g27050
malus_domestica	MD02G1134600.v1.1 MD08G1017400.v1.1 MD08G1161900.v1.1 MD15G1016300.v1.1 MD15G1247900.v1.1 MD15G1347200.v1.1
prunus_persica	Prupe.1G370100_v2.0.a1 Prupe.1G370100_v2.0.a1 Prupe.1G494900_v2.0.a1 Prupe.7G166200_v2.0.a1 Prupe.8G083200_v2.0.a1
pyrus_communis	pycom02g10620 pycom08g01520 pycom15g01430 pycom15g21770 pycom15g31150
rosa_chinensis	RchiOBHm_Chr6g0295951 RchiOBHm_Chr6g0302211
rosa_laevigata	RLG00000011753
rosa_multiflora	Rmu_sc0000529.1_g000004 Rmu_sc0003633.1_g000001
rosa_roxburghii	Rroxscaffold_7G00165990
rosa_rugosa	Rorug06G0255300 Rorug06G0313100
rosa_samantha	Rh6AG369000 Rh6BG376800 Rh6BG476700 Rh6CG382900 Rh6CG438500 Rh6DG369500 Rh6DG425500
rosa_wichuraiana	Rw6G032180 Rw6G036870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	34, 56
AccBSI	CCGCTC	1 cut(s)	114
AccII	CGCG	1 cut(s)	65
AciI	CCGC	6 cut(s)	60, 63, 65, 114, 188, 309
AclWI	GGATC	1 cut(s)	400
AcuI	CTGAAG	1 cut(s)	447
AcyI	GRCGYC	2 cut(s)	57, 128
AfaI	GTAC	2 cut(s)	235, 443
AfiI	CCNNNNNNNGG	1 cut(s)	44
AgeI	ACCGGT	1 cut(s)	236
AgsI	TTSAA	1 cut(s)	12
AluBI	AGCT	5 cut(s)	92, 154, 305, 391, 494
AluI	AGCT	5 cut(s)	92, 154, 305, 391, 494
AlwI	GGATC	1 cut(s)	400
AoxI	GGCC	3 cut(s)	66, 146, 310
ApeKI	GCWGC	1 cut(s)	92
AsiGI	ACCGGT	1 cut(s)	236
AspLEI	GCGC	1 cut(s)	59
AspS9I	GGNCC	1 cut(s)	67
AsuHPI	GGTGA	2 cut(s)	169, 365
BanI	GGYRCC	2 cut(s)	34, 56
BanII	GRGCYC	1 cut(s)	213
BbsI	GAAGAC	1 cut(s)	67
BbvI	GCAGC	1 cut(s)	79
BccI	CCATC	2 cut(s)	127, 269
BceAI	ACGGC	3 cut(s)	48, 120, 206
BcgI	CGANNNNNNTGC	2 cut(s)	263, 297
BfaI	CTAG	2 cut(s)	302, 499
BfoI	RGCGCY	1 cut(s)	60
BglI	GCCNNNNNGGC	2 cut(s)	65, 335
BisI	GCNGC	5 cut(s)	60, 63, 66, 93, 310
BlsI	GCNGC	5 cut(s)	61, 64, 67, 94, 311
BmgT120I	GGNCC	1 cut(s)	67
BmiI	GGNNCC	3 cut(s)	36, 50, 58
BmsI	GCATC	1 cut(s)	346
BpiI	GAAGAC	1 cut(s)	67
BsaHI	GRCGYC	2 cut(s)	57, 128
BsaJI	CCNNGG	3 cut(s)	52, 63, 249
BsaWI	WCCGGW	1 cut(s)	236
BsaXI	ACNNNNNCTCC	2 cut(s)	108, 138
Bsc4I	CCNNNNNNNGG	1 cut(s)	44
Bse118I	RCCGGY	5 cut(s)	175, 236, 317, 329, 359
Bse1I	ACTGG	1 cut(s)	438
BseDI	CCNNGG	3 cut(s)	52, 63, 249
BseGI	GGATG	1 cut(s)	408
BseLI	CCNNNNNNNGG	1 cut(s)	44
BseNI	ACTGG	1 cut(s)	438
BseXI	GCAGC	1 cut(s)	79
Bsh1236I	CGCG	1 cut(s)	65
Bsh1285I	CGRYCG	2 cut(s)	171, 479
BshFI	GGCC	3 cut(s)	68, 148, 312
BshNI	GGYRCC	2 cut(s)	34, 56
BshTI	ACCGGT	1 cut(s)	236
BsiEI	CGRYCG	2 cut(s)	171, 479
BsiSI	CCGG	6 cut(s)	149, 176, 237, 318, 330, 360
BslFI	GGGAC	1 cut(s)	115
BslI	CCNNNNNNNGG	1 cut(s)	44
BsmFI	GGGAC	1 cut(s)	115
BsnI	GGCC	3 cut(s)	68, 148, 312
Bsp1286I	GDGCHC	1 cut(s)	213
Bsp143I	GATC	3 cut(s)	168, 405, 476
BspACI	CCGC	6 cut(s)	60, 63, 65, 114, 188, 309
BspANI	GGCC	3 cut(s)	68, 148, 312
BspFNI	CGCG	1 cut(s)	65
BspLI	GGNNCC	3 cut(s)	36, 50, 58
BspPI	GGATC	1 cut(s)	400
BspQI	GCTCTTC	1 cut(s)	104
BspT107I	GGYRCC	2 cut(s)	34, 56
BsrBI	CCGCTC	1 cut(s)	114
BsrFI	RCCGGY	5 cut(s)	175, 236, 317, 329, 359
BsrI	ACTGG	1 cut(s)	438
BssAI	RCCGGY	5 cut(s)	175, 236, 317, 329, 359
BssECI	CCNNGG	3 cut(s)	52, 63, 249
BssMI	GATC	3 cut(s)	168, 405, 476
BssNI	GRCGYC	2 cut(s)	57, 128
BssT1I	CCWWGG	1 cut(s)	249
Bst4CI	ACNGT	3 cut(s)	39, 441, 446
Bst6I	CTCTTC	2 cut(s)	104, 475
BstACI	GRCGYC	2 cut(s)	57, 128
BstC8I	GCNNGC	1 cut(s)	307
BstDEI	CTNAG	1 cut(s)	255
BstDSI	CCRYGG	1 cut(s)	63
BstF5I	GGATG	1 cut(s)	408
BstFNI	CGCG	1 cut(s)	65
BstH2I	RGCGCY	1 cut(s)	60
BstHHI	GCGC	1 cut(s)	59
BstKTI	GATC	3 cut(s)	171, 408, 479
BstMBI	GATC	3 cut(s)	168, 405, 476
BstMCI	CGRYCG	2 cut(s)	171, 479
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 335
BstUI	CGCG	1 cut(s)	65
BstV1I	GCAGC	1 cut(s)	79
BstV2I	GAAGAC	1 cut(s)	67
BsuRI	GGCC	3 cut(s)	68, 148, 312
BtgI	CCRYGG	1 cut(s)	63
BtgZI	GCGATG	1 cut(s)	39
BtsCI	GGATG	1 cut(s)	408
BtsIMutI	CAGTG	3 cut(s)	25, 431, 437
Cac8I	GCNNGC	1 cut(s)	307
CfoI	GCGC	1 cut(s)	59
Cfr10I	RCCGGY	5 cut(s)	175, 236, 317, 329, 359
Cfr13I	GGNCC	1 cut(s)	67
Cfr42I	CCGCGG	1 cut(s)	66
CseI	GACGC	1 cut(s)	117
Csp6I	GTAC	2 cut(s)	234, 442
CspAI	ACCGGT	1 cut(s)	236
CviQI	GTAC	2 cut(s)	234, 442
DdeI	CTNAG	1 cut(s)	255
DinI	GGCGCC	1 cut(s)	58
DpnI	GATC	3 cut(s)	170, 407, 478
DpnII	GATC	3 cut(s)	168, 405, 476
Eam1104I	CTCTTC	2 cut(s)	104, 475
EarI	CTCTTC	2 cut(s)	104, 475
Eco130I	CCWWGG	1 cut(s)	249
Eco24I	GRGCYC	1 cut(s)	213
Eco57I	CTGAAG	1 cut(s)	447
EcoT14I	CCWWGG	1 cut(s)	249
EcoT38I	GRGCYC	1 cut(s)	213
EgeI	GGCGCC	1 cut(s)	58
EheI	GGCGCC	1 cut(s)	58
ErhI	CCWWGG	1 cut(s)	249
FaiI	YATR	6 cut(s)	86, 97, 99, 185, 282, 335
FaqI	GGGAC	1 cut(s)	115
FauI	CCCGC	1 cut(s)	181
FauNDI	CATATG	1 cut(s)	97
Fnu4HI	GCNGC	5 cut(s)	60, 63, 66, 93, 310
FokI	GGATG	1 cut(s)	415
FriOI	GRGCYC	1 cut(s)	213
Fsp4HI	GCNGC	5 cut(s)	60, 63, 66, 93, 310
FspBI	CTAG	2 cut(s)	302, 499
GlaI	GCGC	1 cut(s)	58
GluI	GCNGC	5 cut(s)	60, 63, 66, 93, 310
HaeII	RGCGCY	1 cut(s)	60
HaeIII	GGCC	3 cut(s)	68, 148, 312
HapII	CCGG	6 cut(s)	149, 176, 237, 318, 330, 360
HgaI	GACGC	1 cut(s)	117
HhaI	GCGC	1 cut(s)	59
Hin1I	GRCGYC	2 cut(s)	57, 128
Hin6I	GCGC	1 cut(s)	57
HinP1I	GCGC	1 cut(s)	57
HindIII	AAGCTT	1 cut(s)	389
HpaII	CCGG	6 cut(s)	149, 176, 237, 318, 330, 360
HphI	GGTGA	2 cut(s)	169, 365
Hpy188I	TCNGA	1 cut(s)	450
Hpy188III	TCNNGA	2 cut(s)	474, 489
Hpy99I	CGWCG	1 cut(s)	133
HpyAV	CCTTC	1 cut(s)	25
HpyCH4III	ACNGT	3 cut(s)	39, 441, 446
HpyCH4V	TGCA	2 cut(s)	95, 377
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 335
HpyF3I	CTNAG	1 cut(s)	255
Hsp92I	GRCGYC	2 cut(s)	57, 128
HspAI	GCGC	1 cut(s)	57
KasI	GGCGCC	1 cut(s)	56
KspI	CCGCGG	1 cut(s)	66
Kzo9I	GATC	3 cut(s)	168, 405, 476
LguI	GCTCTTC	1 cut(s)	104
LmnI	GCTCC	2 cut(s)	89, 151
Lsp1109I	GCAGC	1 cut(s)	79
LweI	GCATC	1 cut(s)	346
MaeI	CTAG	2 cut(s)	302, 499
MalI	GATC	3 cut(s)	170, 407, 478
MbiI	CCGCTC	1 cut(s)	114
MboI	GATC	3 cut(s)	168, 405, 476
MboII	GAAGA	4 cut(s)	34, 67, 121, 462
MhlI	GDGCHC	1 cut(s)	213
Mly113I	GGCGCC	1 cut(s)	57
MnlI	CCTC	5 cut(s)	62, 80, 138, 304, 419
MspA1I	CMGCKG	1 cut(s)	65
MspI	CCGG	6 cut(s)	149, 176, 237, 318, 330, 360
MvnI	CGCG	1 cut(s)	65
MwoI	GCNNNNNNNGC	2 cut(s)	65, 335
NarI	GGCGCC	1 cut(s)	57
NdeI	CATATG	1 cut(s)	97
NdeII	GATC	3 cut(s)	168, 405, 476
NlaIV	GGNNCC	3 cut(s)	36, 50, 58
NmeAIII	GCCGAG	1 cut(s)	33
PciSI	GCTCTTC	1 cut(s)	104
PinAI	ACCGGT	1 cut(s)	236
PkrI	GCNGC	5 cut(s)	61, 64, 67, 94, 311
Ple19I	CGATCG	2 cut(s)	171, 479
PluTI	GGCGCC	1 cut(s)	60
PspN4I	GGNNCC	3 cut(s)	36, 50, 58
PspPI	GGNCC	1 cut(s)	67
PvuI	CGATCG	2 cut(s)	171, 479
RsaI	GTAC	2 cut(s)	235, 443
RsaNI	GTAC	2 cut(s)	234, 442
SacII	CCGCGG	1 cut(s)	66
SapI	GCTCTTC	1 cut(s)	104
SatI	GCNGC	5 cut(s)	60, 63, 66, 93, 310
Sau3AI	GATC	3 cut(s)	168, 405, 476
Sau96I	GGNCC	1 cut(s)	67
SduI	GDGCHC	1 cut(s)	213
SetI	ASST	7 cut(s)	17, 94, 156, 270, 307, 393, 496
SfaNI	GCATC	1 cut(s)	346
SfoI	GGCGCC	1 cut(s)	58
Sfr303I	CCGCGG	1 cut(s)	66
SgrBI	CCGCGG	1 cut(s)	66
SsiI	CCGC	6 cut(s)	60, 63, 65, 114, 188, 309
SspDI	GGCGCC	1 cut(s)	56
SspMI	CTAG	2 cut(s)	302, 499
StyI	CCWWGG	1 cut(s)	249
TaaI	ACNGT	3 cut(s)	39, 441, 446
TaqI	TCGA	3 cut(s)	131, 167, 273
TauI	GCSGC	4 cut(s)	62, 65, 68, 312
TscAI	CASTG	3 cut(s)	25, 438, 444
TseI	GCWGC	1 cut(s)	92
TspDTI	ATGAA	2 cut(s)	42, 176
TspRI	CASTG	3 cut(s)	25, 438, 444
XspI	CTAG	2 cut(s)	302, 499

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.