Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003294

Physical Location & Seq

Genomic Coordinates Reverse (-)

46448264 .. 46452930

Gene Structure 4667 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0313100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2898 bp

ATGGCAGCAAAGGGGAAGCCATCAGTACAAGTGCAGAGGAACTTTGAGAGGTTTATAGCCATTCTAACATCTGCAGCATGTGAATGGTTTTTGATATTTCTTCTGTTTGTCGATGCACTGTTATCCTATCTGCTGACTAAGTTTGCGGTCTATTGCAACTTGCAAAAGCCCTGCATCTTGTGCTCAAGGTTTGAACATATTACTGGTAATGAAAGTTCTCAACTTTATGAGGATCTACTTTGCAGCAACCACATATCGAAGCTCACATCTTGGATAGCTAGTCAAATTTATGGCAATGGAATGCATGAAGATTATCTCTTTCCTTTCACCACAAGGGACAACTCCAACCGAGAAATGCACATGTTTTCAGTTGGTAATTCGGTATCAGATGTTGAAAGTTATAGTTCTCGGAGGCGTGTGCCAAGCAGAAGTTGTGTTCATAGTCCTGTTCACAGTTCTGTGGGTGTAGGGCAATGGTCTTGTTGCTGTAGTCTTTGGGGACATAGAGGAAAGTTTAAAGGACTAAAACTCAAATCATCTGGGACAAAACATGCCAAGCCTAATATTCCTTTGCCACGTTTGCCAAACAGTAGCCGTTCCAATCGAAGCCGGGATAGTTCAAAGAAGATCAGGGATAAGTCTCCGGCGTCAGCCACTAGTCGTTGTTCTGCAAAAGTAGGAGTTGATCCCTTGTTTCATGTAGGATACAGTGAATTGAAGTTCTTCTCTGATACTGACTCAGAGTTTCTGTTTTCTGATGGGGATGATGGTAGCGGTTTAACCAGTGTAAATCATGAGCCCAAGATGGAAGGTTTAGTACGTGCTTCACGATATCGGCCTAAAGCACCACCAAATGGTTTGAGGTCAGGAAGGCCTACCAAGCGTCCCCCCAAACCCAAGCGGTCACTTTCAGAACCATGGCCTGTTTTTAGGAAAGCCTATGATGTAAAATCCTTGGGTTCTGATAACGAATTTGAGACTGGCCTCAGTAAGCTTAACTGTCAACAATCCAATAGGAAGTCCAACCCTTCTGCATTACCTGAGCTCATTTCACTAGATGACATCCTTTCGTCACCCAATGTTCTAGAAAAGGATATTAATGGGACAGGGGACTTTGGATATGCATCTATCAATAAGAATGTTGAACTTCTGAAGTCTGTATGTGCAGCAGACGGAGCACCTGTTAAAAACGATCCAGCTCTTATAAAACCAAACCATAGTAAGGTAGATGCTGTGTCTGAGTCAGAGGTAAGTGTTAGGGCAAGAGATTCGTCTGGTACTACTACAGAAGCTCCTCTTATGAAACCAAACCCTAGTAATGTAAATGCTGTGTCCAAGTCACAGGGAAGTGTTCGAGAAAGAGATTCATCTGGTATTACTACTGAAGCTTTTATAAAACCAGACCATAATAAGGTAAATGTTGTGTCACAGTCAGAGGGAAATGTTAAGGAAAGAGCTTCATCCGGTATTACTACAGAAGCTCTTATACAACCAGACCATAGGAAGGTAAATCCTCTGTCTCAGTCAGACAGAAGTGTTAAGGAAAGAGATTCTTCTGGTGTTTCTAAAGAACAGCCAGCAGTGAAGGAACCCGATAGAGTTGATGAGGAAATGGAAGTGCTAGCTTCACAGGACTCTTCTGCTCGGGAGATTAACTTGTCAGCAAAGAATACAAGTTCGACAGTAGATGGTTGCGTGGGTGAAAAACAGACAACTGATGCCTCCAGCTCTAATGCAAAGCCAATGCTTCACACGTCAGCATCAGTAGAATCTGGTCTTGAATCGCTGGATGGAGGGTATGTCAGTGAAATTGAAGGTGAAAGTATAGTTGATCAGTTAAAACGACAGATTGATTATGACAGGAAATGCATAAAGGAGTTGTATAAGGAATTGGAAGAAGAAAGGAGTGCCGCTGCAATTGCTGCAAATCAGGCAATGGCCATGATCACAAAGCTCCAAGAAGAGAAAGCTGCATTCCATATGGAGGCCCTTCACTGCTTAAGAATGATGGAAGAGCAGGCTGAGTTTGATGTAGAGGCACTGGAGAAAGCCAATGATCTCCTGGCTGAAAAGGAGAAAGAGATACAGGACTTGGAAGCAGAGCTAGAATTTTCTAAGTTAGACTTACAAGATGAATCGATAATGGAGAATCCACTTGACAAAAGTTGTGATATGATGGGGGGGATTGACCTGGTGGAGAATACTGTTATGCCCGGTGTAAAAAACGATCTCAATGTTACTTGCAACTCAATGGCTACGGAGGTATCCACAGGCAGTAACCAACCTCCTTTTTCTGAAACTACTCTTTTAGAGTTTGAAGATGAAAAATTGTACATTTCAAATTGTTTGAAGAGCTTGGAGAGGAAGCTTTCTGAACTTTCCAGCAGAGGGGCTTCCTCCAAAATGCTTAATGGTGGGCATTCCCAAAAGCATATGGATGATGGACAAAATCAAGCAGAGACTCCTAGAAAAGAGAGGAGTCTATTAAATGATGGACAAAATCAAGAAGAGACTCCTAGGAAAGAGAGGAGTCTATTAAATGGCCAGCTTGAAGAGAATGTTCTGCATGGGCAAAAAGATTTACATATGTCTAACGGTAGCTCTGCTGCTCAAGAAGGGCCAACTGGTTGTGATGGCGGTGATGAATTAGAATGTGAAGACAATAATGCTGATTCCCATGGGGAAAAACATATCATGGATCCTGGAGAAATGGATTTGGTTATTCTGGAAAATGAAATCTCAGACCTTAATGATAGGTTGGAGGCACTTGAGACTGATCATGATTTTCTTGAGCACATGCTCTACTCTCTTCAAAATGGAGCAGAAGGACTACAATTTGTTCGAGAGATAGCTCATCAACTGCAAGAGTTGCGGAAGATAGGGACGGGTTTCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000220 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006885 GO:0007035 GO:0008150 GO:0008324 GO:0009987 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015672 GO:0016020 GO:0016021 GO:0016462 GO:0016469 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019725 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030003 GO:0030004 GO:0030641 GO:0031090 GO:0031224 GO:0032991 GO:0033176 GO:0033177 GO:0033179 GO:0034220 GO:0036442 GO:0042592 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044769 GO:0045851 GO:0046961 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051452 GO:0051453 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098796 GO:0098805 GO:0099131 GO:0099132 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04142 ko04145 ko04721 ko04966 ko05110 ko05120 ko05152 ko05323 map00190 map01100 map04142 map04145 map04721 map04966 map05110 map05120 map05152 map05323

Pfam Domains

Protein Families

ATP-synt_C

Protein Analysis

965

Amino Acids

106.53

Weight (kDa)

5.27

Isoelectric Point (pI)

45.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zein-binding	PF04576	612 - 702	2.7e-28	Zein-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003294)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75630 AT1G75630
fragaria_vesca	FvH4_2g27050
malus_domestica	MD02G1134600.v1.1 MD08G1017400.v1.1 MD08G1161900.v1.1 MD15G1016300.v1.1 MD15G1247900.v1.1 MD15G1347200.v1.1
prunus_persica	Prupe.1G370100_v2.0.a1 Prupe.1G370100_v2.0.a1 Prupe.1G494900_v2.0.a1 Prupe.7G166200_v2.0.a1 Prupe.8G083200_v2.0.a1
pyrus_communis	pycom02g10620 pycom08g01520 pycom15g01430 pycom15g21770 pycom15g31150
rosa_chinensis	RchiOBHm_Chr6g0295951 RchiOBHm_Chr6g0302211
rosa_laevigata	RLG00000011753
rosa_multiflora	Rmu_sc0000529.1_g000004 Rmu_sc0003633.1_g000001
rosa_roxburghii	Rroxscaffold_7G00165990
rosa_rugosa	Rorug06G0255300 Rorug06G0313100
rosa_samantha	Rh6AG369000 Rh6BG376800 Rh6BG476700 Rh6CG382900 Rh6CG438500 Rh6DG369500 Rh6DG425500
rosa_wichuraiana	Rw6G032180 Rw6G036870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1205, 1394
AccB7I	CCANNNNNTGG	1 cut(s)	854
AciI	CCGC	6 cut(s)	146, 774, 901, 1911, 2637, 2872
AclWI	GGATC	5 cut(s)	240, 680, 1187, 2693, 2706
AcoI	YGGCCR	2 cut(s)	1938, 2542
AcsI	RAATTY	3 cut(s)	285, 971, 2108
AcuI	CTGAAG	2 cut(s)	1172, 1404
AcyI	GRCGYC	1 cut(s)	647
AfaI	GTAC	4 cut(s)	27, 819, 1279, 2333
AfiI	CCNNNNNNNGG	6 cut(s)	854, 1222, 1411, 1504, 1984, 2388
AflII	CTTAAG	1 cut(s)	1999
AflIII	ACRYGT	2 cut(s)	360, 1752
AhlI	ACTAGT	1 cut(s)	656
AjiI	CACGTC	1 cut(s)	1755
AjnI	CCWGG	3 cut(s)	2061, 2190, 2701
Alw21I	GWGCWC	4 cut(s)	185, 1047, 1180, 2796
Alw26I	GTCTC	6 cut(s)	645, 971, 1524, 2453, 2504, 2765
AlwI	GGATC	5 cut(s)	240, 680, 1187, 2693, 2706
Ama87I	CYCGRG	1 cut(s)	1644
AoxI	GGCC	8 cut(s)	836, 872, 920, 982, 1938, 1986, 2542, 2618
ApeKI	GCWGC	8 cut(s)	5, 74, 243, 1166, 1913, 1922, 1970, 2606
ApoI	RAATTY	3 cut(s)	285, 971, 2108
AseI	ATTAAT	1 cut(s)	1098
Asp700I	GAANNNNTTC	1 cut(s)	722
AspA2I	CCTAGG	1 cut(s)	2516
AspS9I	GGNCC	2 cut(s)	1987, 2618
AsuC2I	CCSGG	2 cut(s)	611, 2214
AsuHPI	GGTGA	5 cut(s)	319, 1065, 1712, 1829, 2651
AsuNHI	GCTAGC	1 cut(s)	1621
AvaI	CYCGRG	1 cut(s)	1644
AvrII	CCTAGG	1 cut(s)	2516
BaeI	ACNNNNGTAYC	2 cut(s)	2247, 2280
BalI	TGGCCA	2 cut(s)	1940, 2544
BamHI	GGATCC	1 cut(s)	2698
BanII	GRGCYC	2 cut(s)	801, 1047
BarI	GAAGNNNNNNTAC	4 cut(s)	801, 833, 1470, 1502
BbsI	GAAGAC	1 cut(s)	2664
Bbv12I	GWGCWC	4 cut(s)	185, 1047, 1180, 2796
BbvI	GCAGC	8 cut(s)	17, 86, 255, 1178, 1900, 1909, 1957, 2593
BceAI	ACGGC	1 cut(s)	579
BcgI	CGANNNNNNTGC	2 cut(s)	1251, 1285
BciT130I	CCWGG	3 cut(s)	2063, 2192, 2703
BciVI	GTATCC	2 cut(s)	698, 2275
BclI	TGATCA	3 cut(s)	1831, 1944, 2776
BcnI	CCSGG	2 cut(s)	611, 2214
BcoDI	GTCTC	6 cut(s)	645, 971, 1524, 2453, 2504, 2765
BcuI	ACTAGT	1 cut(s)	656
BfaI	CTAG	9 cut(s)	279, 657, 1055, 1085, 1314, 1622, 2105, 2466, 2517
BfmI	CTRYAG	4 cut(s)	72, 487, 1284, 1473
BfrI	CTTAAG	1 cut(s)	1999
BfuI	GTATCC	2 cut(s)	698, 2275
BisI	GCNGC	9 cut(s)	6, 75, 244, 1167, 1911, 1914, 1923, 1971, 2607
BlnI	CCTAGG	1 cut(s)	2516
BlsI	GCNGC	9 cut(s)	7, 76, 245, 1168, 1912, 1915, 1924, 1972, 2608
Bme1390I	CCNGG	5 cut(s)	611, 2063, 2192, 2214, 2703
BmeT110I	CYCGRG	1 cut(s)	1644
BmgBI	CACGTC	1 cut(s)	1755
BmgT120I	GGNCC	2 cut(s)	1987, 2618
BmiI	GGNNCC	2 cut(s)	1590, 2700
BmrFI	CCNGG	5 cut(s)	611, 2063, 2192, 2214, 2703
BmsI	GCATC	6 cut(s)	103, 183, 1133, 1219, 1708, 1769
BmtI	GCTAGC	1 cut(s)	1625
BpiI	GAAGAC	1 cut(s)	2664
BpmI	CTGGAG	3 cut(s)	1708, 2063, 2724
Bpu10I	CCTNAGC	1 cut(s)	1041
BpuEI	CTTGAG	4 cut(s)	169, 2595, 2789, 2810
BpuMI	CCSGG	2 cut(s)	611, 2214
Bsa29I	ATCGAT	1 cut(s)	2138
BsaAI	YACGTR	1 cut(s)	821
BsaBI	GATNNNNATC	1 cut(s)	1123
BsaHI	GRCGYC	1 cut(s)	647
BsaJI	CCNNGG	4 cut(s)	917, 954, 2516, 2677
BsaWI	WCCGGW	1 cut(s)	1463
BsaXI	ACNNNNNCTCC	6 cut(s)	1167, 1197, 1276, 1306, 1785, 1815
Bsc4I	CCNNNNNNNGG	6 cut(s)	854, 1222, 1411, 1504, 1984, 2388
Bse1I	ACTGG	5 cut(s)	208, 783, 985, 2046, 2629
Bse3DI	GCAATG	3 cut(s)	301, 479, 1941
Bse8I	GATNNNNATC	1 cut(s)	1123
BseBI	CCWGG	3 cut(s)	2063, 2192, 2703
BseCI	ATCGAT	1 cut(s)	2138
BseDI	CCNNGG	4 cut(s)	917, 954, 2516, 2677
BseGI	GGATG	5 cut(s)	769, 1062, 1460, 1795, 2443
BseJI	GATNNNNATC	1 cut(s)	1123
BseLI	CCNNNNNNNGG	6 cut(s)	854, 1222, 1411, 1504, 1984, 2388
BseMI	GCAATG	3 cut(s)	301, 479, 1941
BseMII	CTCAG	7 cut(s)	753, 1000, 1032, 1230, 1535, 2013, 2754
BseNI	ACTGG	5 cut(s)	208, 783, 985, 2046, 2629
BseRI	GAGGAG	3 cut(s)	1284, 2491, 2542
BseXI	GCAGC	8 cut(s)	17, 86, 255, 1178, 1900, 1909, 1957, 2593
BsgI	GTGCAG	2 cut(s)	53, 1185
BshFI	GGCC	8 cut(s)	838, 874, 922, 984, 1940, 1988, 2544, 2620
BshVI	ATCGAT	1 cut(s)	2138
BsiHKAI	GWGCWC	4 cut(s)	185, 1047, 1180, 2796
BsiHKCI	CYCGRG	1 cut(s)	1644
BsiSI	CCGG	4 cut(s)	610, 644, 1464, 2214
BslFI	GGGAC	6 cut(s)	350, 513, 556, 870, 1117, 1124
BslI	CCNNNNNNNGG	6 cut(s)	854, 1222, 1411, 1504, 1984, 2388
BsmAI	GTCTC	6 cut(s)	645, 971, 1524, 2453, 2504, 2765
BsmFI	GGGAC	6 cut(s)	350, 513, 556, 870, 1117, 1124
BsmI	GAATGC	3 cut(s)	306, 1973, 2419
BsnI	GGCC	8 cut(s)	838, 874, 922, 984, 1940, 1988, 2544, 2620
BsoBI	CYCGRG	1 cut(s)	1644
Bsp1286I	GDGCHC	5 cut(s)	185, 801, 1047, 1180, 2796
Bsp1407I	TGTACA	1 cut(s)	2331
Bsp19I	CCATGG	2 cut(s)	917, 2677
BspACI	CCGC	6 cut(s)	146, 774, 901, 1911, 2637, 2872
BspANI	GGCC	8 cut(s)	838, 874, 922, 984, 1940, 1988, 2544, 2620
BspCNI	CTCAG	7 cut(s)	752, 999, 1033, 1231, 1534, 2014, 2753
BspDI	ATCGAT	1 cut(s)	2138
BspHI	TCATGA	2 cut(s)	793, 2779
BspLI	GGNNCC	2 cut(s)	1590, 2700
BspMAI	CTGCAG	1 cut(s)	76
BspOI	GCTAGC	1 cut(s)	1625
BspPI	GGATC	5 cut(s)	240, 680, 1187, 2693, 2706
BspQI	GCTCTTC	2 cut(s)	2007, 2345
BspTI	CTTAAG	1 cut(s)	1999
BsrDI	GCAATG	3 cut(s)	301, 479, 1941
BsrGI	TGTACA	1 cut(s)	2331
BsrI	ACTGG	5 cut(s)	208, 783, 985, 2046, 2629
BssECI	CCNNGG	4 cut(s)	917, 954, 2516, 2677
BssNI	GRCGYC	1 cut(s)	647
BssT1I	CCWWGG	4 cut(s)	917, 954, 2516, 2677
Bst2UI	CCWGG	3 cut(s)	2063, 2192, 2703
Bst4CI	ACNGT	9 cut(s)	120, 455, 590, 710, 1001, 1431, 1684, 2206, 2597
Bst6I	CTCTTC	7 cut(s)	1642, 1956, 2007, 2345, 2502, 2547, 2814
BstACI	GRCGYC	1 cut(s)	647
BstAFI	CTTAAG	1 cut(s)	1999
BstAPI	GCANNNNNTGC	3 cut(s)	180, 1922, 2869
BstAUI	TGTACA	1 cut(s)	2331
BstBAI	YACGTR	1 cut(s)	821
BstC8I	GCNNGC	4 cut(s)	1578, 1623, 2019, 2546
BstDEI	CTNAG	9 cut(s)	138, 739, 986, 1041, 1239, 1521, 2022, 2115, 2740
BstDSI	CCRYGG	2 cut(s)	917, 2677
BstF5I	GGATG	5 cut(s)	769, 1062, 1460, 1795, 2443
BstMAI	GTCTC	6 cut(s)	645, 971, 1524, 2453, 2504, 2765
BstMWI	GCNNNNNNNGC	8 cut(s)	180, 580, 880, 1175, 1919, 1922, 1931, 2869
BstNI	CCWGG	3 cut(s)	2063, 2192, 2703
BstNSI	RCATGY	4 cut(s)	81, 364, 554, 2800
BstSCI	CCNGG	5 cut(s)	609, 2061, 2190, 2212, 2701
BstSFI	CTRYAG	4 cut(s)	72, 487, 1284, 1473
BstV1I	GCAGC	8 cut(s)	17, 86, 255, 1178, 1900, 1909, 1957, 2593
BstV2I	GAAGAC	1 cut(s)	2664
BstX2I	RGATCY	2 cut(s)	232, 2698
BstYI	RGATCY	2 cut(s)	232, 2698
Bsu15I	ATCGAT	1 cut(s)	2138
BsuI	GTATCC	2 cut(s)	698, 2275
BsuRI	GGCC	8 cut(s)	838, 874, 922, 984, 1940, 1988, 2544, 2620
BsuTUI	ATCGAT	1 cut(s)	2138
BtgI	CCRYGG	2 cut(s)	917, 2677
BtrI	CACGTC	1 cut(s)	1755
BtsCI	GGATG	5 cut(s)	769, 1062, 1460, 1795, 2443
BtsI	GCAGTG	2 cut(s)	1587, 1993
BtsIMutI	CAGTG	7 cut(s)	116, 715, 790, 1587, 1810, 1993, 2039
Cac8I	GCNNGC	4 cut(s)	1578, 1623, 2019, 2546
CciI	TCATGA	2 cut(s)	793, 2779
Cfr13I	GGNCC	2 cut(s)	1987, 2618
ClaI	ATCGAT	1 cut(s)	2138
CseI	GACGC	2 cut(s)	636, 872
CsiI	ACCWGGT	1 cut(s)	2190
Csp6I	GTAC	4 cut(s)	26, 818, 1278, 2332
CviQI	GTAC	4 cut(s)	26, 818, 1278, 2332
DdeI	CTNAG	9 cut(s)	138, 739, 986, 1041, 1239, 1521, 2022, 2115, 2740
DraI	TTTAAA	1 cut(s)	517
EaeI	YGGCCR	2 cut(s)	1938, 2542
Eam1104I	CTCTTC	7 cut(s)	1642, 1956, 2007, 2345, 2502, 2547, 2814
EarI	CTCTTC	7 cut(s)	1642, 1956, 2007, 2345, 2502, 2547, 2814
Ecl136II	GAGCTC	1 cut(s)	1045
Eco130I	CCWWGG	4 cut(s)	917, 954, 2516, 2677
Eco147I	AGGCCT	1 cut(s)	874
Eco24I	GRGCYC	2 cut(s)	801, 1047
Eco32I	GATATC	1 cut(s)	833
Eco53kI	GAGCTC	1 cut(s)	1045
Eco57I	CTGAAG	2 cut(s)	1172, 1404
Eco88I	CYCGRG	1 cut(s)	1644
EcoICRI	GAGCTC	1 cut(s)	1045
EcoO109I	RGGNCCY	1 cut(s)	1987
EcoRII	CCWGG	3 cut(s)	2061, 2190, 2701
EcoRV	GATATC	1 cut(s)	833
EcoT14I	CCWWGG	4 cut(s)	917, 954, 2516, 2677
EcoT22I	ATGCAT	3 cut(s)	306, 1126, 1871
EcoT38I	GRGCYC	2 cut(s)	801, 1047
ErhI	CCWWGG	4 cut(s)	917, 954, 2516, 2677
FalI	AAGNNNNNCTT	6 cut(s)	1281, 1313, 1537, 1569, 2108, 2140
FaqI	GGGAC	6 cut(s)	350, 513, 556, 870, 1117, 1124
FauNDI	CATATG	3 cut(s)	1980, 2433, 2586
FbaI	TGATCA	3 cut(s)	1831, 1944, 2776
Fnu4HI	GCNGC	9 cut(s)	6, 75, 244, 1167, 1911, 1914, 1923, 1971, 2607
FokI	GGATG	5 cut(s)	776, 1049, 1447, 1802, 2450
FriOI	GRGCYC	2 cut(s)	801, 1047
Fsp4HI	GCNGC	9 cut(s)	6, 75, 244, 1167, 1911, 1914, 1923, 1971, 2607
FspBI	CTAG	9 cut(s)	279, 657, 1055, 1085, 1314, 1622, 2105, 2466, 2517
GluI	GCNGC	9 cut(s)	6, 75, 244, 1167, 1911, 1914, 1923, 1971, 2607
GsuI	CTGGAG	3 cut(s)	1708, 2063, 2724
HaeIII	GGCC	8 cut(s)	838, 874, 922, 984, 1940, 1988, 2544, 2620
HapII	CCGG	4 cut(s)	610, 644, 1464, 2214
HgaI	GACGC	2 cut(s)	636, 872
Hin1I	GRCGYC	1 cut(s)	647
HincII	GTYRAC	1 cut(s)	1004
HindII	GTYRAC	1 cut(s)	1004
HindIII	AAGCTT	3 cut(s)	992, 1386, 2366
HpaII	CCGG	4 cut(s)	610, 644, 1464, 2214
HphI	GGTGA	5 cut(s)	319, 1065, 1712, 1829, 2651
Hpy166II	GTNNAC	2 cut(s)	451, 1004
Hpy8I	GTNNAC	2 cut(s)	451, 1004
HpyAV	CCTTC	9 cut(s)	803, 864, 1038, 1498, 1579, 1808, 2000, 2609, 2819
HpyCH4III	ACNGT	9 cut(s)	120, 455, 590, 710, 1001, 1431, 1684, 2206, 2597
HpyCH4IV	ACGT	3 cut(s)	577, 820, 1754
HpyF10VI	GCNNNNNNNGC	8 cut(s)	180, 580, 880, 1175, 1919, 1922, 1931, 2869
HpyF3I	CTNAG	9 cut(s)	138, 739, 986, 1041, 1239, 1521, 2022, 2115, 2740
HpySE526I	ACGT	3 cut(s)	577, 820, 1754
Hsp92I	GRCGYC	1 cut(s)	647
Ksp22I	TGATCA	3 cut(s)	1831, 1944, 2776
LguI	GCTCTTC	2 cut(s)	2007, 2345
LmnI	GCTCC	4 cut(s)	1175, 1297, 1959, 2819
Lsp1109I	GCAGC	8 cut(s)	17, 86, 255, 1178, 1900, 1909, 1957, 2593
LweI	GCATC	6 cut(s)	103, 183, 1133, 1219, 1708, 1769
MabI	ACCWGGT	1 cut(s)	2190
MaeI	CTAG	9 cut(s)	279, 657, 1055, 1085, 1314, 1622, 2105, 2466, 2517
MaeII	ACGT	3 cut(s)	577, 820, 1754
MaeIII	GTNAC	6 cut(s)	903, 1071, 1338, 1425, 2236, 2276
MfeI	CAATTG	1 cut(s)	1917
MflI	RGATCY	2 cut(s)	232, 2698
MhlI	GDGCHC	5 cut(s)	185, 801, 1047, 1180, 2796
MlsI	TGGCCA	2 cut(s)	1940, 2544
MluNI	TGGCCA	2 cut(s)	1940, 2544
MlyI	GAGTC	7 cut(s)	731, 1250, 1628, 2455, 2488, 2506, 2539
MmeI	TCCRAC	3 cut(s)	369, 1047, 2739
Mox20I	TGGCCA	2 cut(s)	1940, 2544
Mph1103I	ATGCAT	3 cut(s)	306, 1126, 1871
MroXI	GAANNNNTTC	1 cut(s)	722
MscI	TGGCCA	2 cut(s)	1940, 2544
MslI	CAYNNNNRTG	2 cut(s)	82, 2436
Msp20I	TGGCCA	2 cut(s)	1940, 2544
MspA1I	CMGCKG	1 cut(s)	1913
MspCI	CTTAAG	1 cut(s)	1999
MspI	CCGG	4 cut(s)	610, 644, 1464, 2214
MspR9I	CCNGG	5 cut(s)	611, 2063, 2192, 2214, 2703
MunI	CAATTG	1 cut(s)	1917
Mva1269I	GAATGC	3 cut(s)	306, 1973, 2419
MvaI	CCWGG	3 cut(s)	2063, 2192, 2703
MwoI	GCNNNNNNNGC	8 cut(s)	180, 580, 880, 1175, 1919, 1922, 1931, 2869
NciI	CCSGG	2 cut(s)	611, 2214
NcoI	CCATGG	2 cut(s)	917, 2677
NdeI	CATATG	3 cut(s)	1980, 2433, 2586
NheI	GCTAGC	1 cut(s)	1621
NlaIV	GGNNCC	2 cut(s)	1590, 2700
NmuCI	GTSAC	4 cut(s)	903, 1071, 1338, 1425
NsiI	ATGCAT	3 cut(s)	306, 1126, 1871
NspI	RCATGY	4 cut(s)	81, 364, 554, 2800
PagI	TCATGA	2 cut(s)	793, 2779
PceI	AGGCCT	1 cut(s)	874
PciI	ACATGT	1 cut(s)	360
PciSI	GCTCTTC	2 cut(s)	2007, 2345
PcsI	WCGNNNNNNNCGW	1 cut(s)	826
PctI	GAATGC	3 cut(s)	306, 1973, 2419
PdmI	GAANNNNTTC	1 cut(s)	722
PfeI	GAWTC	8 cut(s)	1268, 1364, 1550, 1769, 1781, 2135, 2149, 2672
PflMI	CCANNNNNTGG	1 cut(s)	854
PfoI	TCCNGGA	1 cut(s)	2701
PkrI	GCNGC	9 cut(s)	7, 76, 245, 1168, 1912, 1915, 1924, 1972, 2608
PleI	GAGTC	7 cut(s)	731, 1249, 1628, 2455, 2487, 2506, 2538
PpsI	GAGTC	7 cut(s)	731, 1249, 1628, 2455, 2487, 2506, 2538
Ppu21I	YACGTR	1 cut(s)	821
PscI	ACATGT	1 cut(s)	360
PshBI	ATTAAT	1 cut(s)	1098
PsiI	TTATAA	2 cut(s)	1205, 1394
Psp124BI	GAGCTC	1 cut(s)	1047
Psp6I	CCWGG	3 cut(s)	2061, 2190, 2701
PspGI	CCWGG	3 cut(s)	2061, 2190, 2701
PspN4I	GGNNCC	2 cut(s)	1590, 2700
PspPI	GGNCC	2 cut(s)	1987, 2618
PsrI	GAACNNNNNNTAC	2 cut(s)	199, 231
PstI	CTGCAG	1 cut(s)	76
PsuI	RGATCY	2 cut(s)	232, 2698
RsaI	GTAC	4 cut(s)	27, 819, 1279, 2333
RsaNI	GTAC	4 cut(s)	26, 818, 1278, 2332
RseI	CAYNNNNRTG	2 cut(s)	82, 2436
SacI	GAGCTC	1 cut(s)	1047
SapI	GCTCTTC	2 cut(s)	2007, 2345
SatI	GCNGC	9 cut(s)	6, 75, 244, 1167, 1911, 1914, 1923, 1971, 2607
Sau96I	GGNCC	2 cut(s)	1987, 2618
SchI	GAGTC	7 cut(s)	731, 1250, 1628, 2455, 2488, 2506, 2539
ScrFI	CCNGG	5 cut(s)	611, 2063, 2192, 2214, 2703
SduI	GDGCHC	5 cut(s)	185, 801, 1047, 1180, 2796
SexAI	ACCWGGT	1 cut(s)	2190
SfaNI	GCATC	6 cut(s)	103, 183, 1133, 1219, 1708, 1769
SfcI	CTRYAG	4 cut(s)	72, 487, 1284, 1473
SmiMI	CAYNNNNRTG	2 cut(s)	82, 2436
SmlI	CTYRAG	5 cut(s)	184, 1999, 2610, 2768, 2789
SmoI	CTYRAG	5 cut(s)	184, 1999, 2610, 2768, 2789
SpeI	ACTAGT	1 cut(s)	656
SseBI	AGGCCT	1 cut(s)	874
SsiI	CCGC	6 cut(s)	146, 774, 901, 1911, 2637, 2872
SspI	AATATT	1 cut(s)	565
SspMI	CTAG	9 cut(s)	279, 657, 1055, 1085, 1314, 1622, 2105, 2466, 2517
SstI	GAGCTC	1 cut(s)	1047
StuI	AGGCCT	1 cut(s)	874
StyD4I	CCNGG	5 cut(s)	609, 2061, 2190, 2212, 2701
StyI	CCWWGG	4 cut(s)	917, 954, 2516, 2677
TaaI	ACNGT	9 cut(s)	120, 455, 590, 710, 1001, 1431, 1684, 2206, 2597
TaiI	ACGT	3 cut(s)	580, 823, 1757
TaqI	TCGA	7 cut(s)	111, 257, 604, 1354, 1679, 2138, 2842
TatI	WGTACW	2 cut(s)	25, 2331
TauI	GCSGC	1 cut(s)	1913
TfiI	GAWTC	8 cut(s)	1268, 1364, 1550, 1769, 1781, 2135, 2149, 2672
TscAI	CASTG	7 cut(s)	123, 715, 790, 1587, 1810, 2000, 2046
TseFI	GTSAC	4 cut(s)	903, 1071, 1338, 1425
TseI	GCWGC	8 cut(s)	5, 74, 243, 1166, 1913, 1922, 1970, 2606
Tsp45I	GTSAC	4 cut(s)	903, 1071, 1338, 1425
TspGWI	ACGGA	2 cut(s)	1188, 2273
TspRI	CASTG	7 cut(s)	123, 715, 790, 1587, 1810, 2000, 2046
Van91I	CCANNNNNTGG	1 cut(s)	854
Vha464I	CTTAAG	1 cut(s)	1999
VspI	ATTAAT	1 cut(s)	1098
XapI	RAATTY	3 cut(s)	285, 971, 2108
XbaI	TCTAGA	1 cut(s)	1084
XceI	RCATGY	4 cut(s)	81, 364, 554, 2800
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2059
XmaJI	CCTAGG	1 cut(s)	2516
XmnI	GAANNNNTTC	1 cut(s)	722
XspI	CTAG	9 cut(s)	279, 657, 1055, 1085, 1314, 1622, 2105, 2466, 2517
Zsp2I	ATGCAT	3 cut(s)	306, 1126, 1871

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.