Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0003294

Physical Location & Seq

Genomic Coordinates Reverse (-)

18992727 .. 18995974

Gene Structure 3248 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1161900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGCTTCTTCTACCTTCAGCGGCGACGAAACCGCTCCCTTCTTCGGCTTCCTCGGCGCCGCCGCAGCCCTCGTCTTCTCCTGCATGGGCGCCGCCTATGGGACGGCCAAGAGCGGTGTGGGCGTGGCCTCCATGGGAGTGATGCGGCCGGAGCTCGTGATGAAATCGATCGTTCCGGTGGTTATGGCGGGAGTGCTCGGGATCTATGGGCTTATTATAGCTGTTATTATTAGTACCGGGATTAACCCGAAGGCCAAATCTTATTATCTGTTTGATGGGTATGCTCACTTGTCATCTGGCCTTGCTTGCGGTCTGGCCGGACTCTCCGCCGGAATGGCGATTGGGATTGTCGGTGACGCCGGTGTCCGAGCTAATGCACAGCAGCCCAAGCTCTTTGTTGGTATGATTCTTATCCTCATCTTTGCTGAAGCTCTTGCCTTGTATGGTCTCATCGTGGGGATCATCCTCTCATCCCGATCAGGGCAATCTCGTGCAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000220 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006885 GO:0007035 GO:0008150 GO:0008324 GO:0009987 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015672 GO:0016020 GO:0016021 GO:0016462 GO:0016469 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019725 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030003 GO:0030004 GO:0030641 GO:0031090 GO:0031224 GO:0032991 GO:0033176 GO:0033177 GO:0033179 GO:0034220 GO:0036442 GO:0042592 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044769 GO:0045851 GO:0046961 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051452 GO:0051453 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098796 GO:0098805 GO:0099131 GO:0099132 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04142 ko04145 ko04721 ko04966 ko05110 ko05120 ko05152 ko05323 map00190 map01100 map04142 map04145 map04721 map04966 map05110 map05120 map05152 map05323

Pfam Domains

Protein Families

ATP-synt_C

Protein Analysis

167

Amino Acids

16.73

Weight (kDa)

8.62

Isoelectric Point (pI)

34.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP-synt_C	PF00137	18 - 77	3.9e-15	ATP synthase subunit C
ATP-synt_C	PF00137	98 - 156	3.1e-18	ATP synthase subunit C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003294)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75630 AT1G75630
fragaria_vesca	FvH4_2g27050
malus_domestica	MD02G1134600.v1.1 MD08G1017400.v1.1 MD08G1161900.v1.1 MD15G1016300.v1.1 MD15G1247900.v1.1 MD15G1347200.v1.1
prunus_persica	Prupe.1G370100_v2.0.a1 Prupe.1G370100_v2.0.a1 Prupe.1G494900_v2.0.a1 Prupe.7G166200_v2.0.a1 Prupe.8G083200_v2.0.a1
pyrus_communis	pycom02g10620 pycom08g01520 pycom15g01430 pycom15g21770 pycom15g31150
rosa_chinensis	RchiOBHm_Chr6g0295951 RchiOBHm_Chr6g0302211
rosa_laevigata	RLG00000011753
rosa_multiflora	Rmu_sc0000529.1_g000004 Rmu_sc0003633.1_g000001
rosa_roxburghii	Rroxscaffold_7G00165990
rosa_rugosa	Rorug06G0255300 Rorug06G0313100
rosa_samantha	Rh6AG369000 Rh6BG376800 Rh6BG476700 Rh6CG382900 Rh6CG438500 Rh6DG369500 Rh6DG425500
rosa_wichuraiana	Rw6G032180 Rw6G036870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	362
AccB1I	GGYRCC	2 cut(s)	56, 89
AccBSI	CCGCTC	2 cut(s)	35, 114
AclWI	GGATC	2 cut(s)	209, 467
AcoI	YGGCCR	3 cut(s)	105, 146, 315
AcuI	CTGAAG	1 cut(s)	447
AcyI	GRCGYC	3 cut(s)	57, 90, 357
AfaI	GTAC	1 cut(s)	235
AfiI	CCNNNNNNNGG	3 cut(s)	44, 99, 480
AluBI	AGCT	5 cut(s)	154, 221, 371, 391, 431
AluI	AGCT	5 cut(s)	154, 221, 371, 391, 431
Alw21I	GWGCWC	2 cut(s)	156, 198
Alw26I	GTCTC	1 cut(s)	452
AlwI	GGATC	2 cut(s)	209, 467
Ama87I	CYCGRG	1 cut(s)	197
AoxI	GGCC	6 cut(s)	105, 126, 146, 252, 298, 315
ApeKI	GCWGC	2 cut(s)	65, 382
AspLEI	GCGC	2 cut(s)	59, 92
AsuC2I	CCSGG	1 cut(s)	238
AsuHPI	GGTGA	1 cut(s)	365
AvaI	CYCGRG	1 cut(s)	197
BanI	GGYRCC	2 cut(s)	56, 89
BanII	GRGCYC	1 cut(s)	156
BauI	CACGAG	2 cut(s)	155, 489
BbsI	GAAGAC	1 cut(s)	67
Bbv12I	GWGCWC	2 cut(s)	156, 198
BbvI	GCAGC	2 cut(s)	77, 394
BccI	CCATC	1 cut(s)	269
BceAI	ACGGC	1 cut(s)	120
BcnI	CCSGG	1 cut(s)	238
BcoDI	GTCTC	1 cut(s)	452
BfoI	RGCGCY	2 cut(s)	60, 93
BglI	GCCNNNNNGGC	1 cut(s)	335
BisI	GCNGC	7 cut(s)	22, 60, 63, 66, 93, 146, 383
BlsI	GCNGC	7 cut(s)	23, 61, 64, 67, 94, 147, 384
Bme1390I	CCNGG	1 cut(s)	238
BmeT110I	CYCGRG	1 cut(s)	197
BmiI	GGNNCC	2 cut(s)	58, 91
BmrFI	CCNGG	1 cut(s)	238
BmsI	GCATC	1 cut(s)	132
BpiI	GAAGAC	1 cut(s)	67
BpuMI	CCSGG	1 cut(s)	238
Bsa29I	ATCGAT	1 cut(s)	167
BsaBI	GATNNNNATC	1 cut(s)	410
BsaHI	GRCGYC	3 cut(s)	57, 90, 357
BsaI	GGTCTC	1 cut(s)	452
BsaJI	CCNNGG	2 cut(s)	52, 132
BsaWI	WCCGGW	1 cut(s)	175
Bsc4I	CCNNNNNNNGG	3 cut(s)	44, 99, 480
Bse118I	RCCGGY	1 cut(s)	359
Bse8I	GATNNNNATC	1 cut(s)	410
BseCI	ATCGAT	1 cut(s)	167
BseDI	CCNNGG	2 cut(s)	52, 132
BseGI	GGATG	2 cut(s)	462, 470
BseJI	GATNNNNATC	1 cut(s)	410
BseLI	CCNNNNNNNGG	3 cut(s)	44, 99, 480
BseX3I	CGGCCG	1 cut(s)	146
BseXI	GCAGC	2 cut(s)	77, 394
Bsh1285I	CGRYCG	2 cut(s)	149, 171
BshFI	GGCC	6 cut(s)	107, 128, 148, 254, 300, 317
BshNI	GGYRCC	2 cut(s)	56, 89
BshVI	ATCGAT	1 cut(s)	167
BsiEI	CGRYCG	2 cut(s)	149, 171
BsiHKAI	GWGCWC	2 cut(s)	156, 198
BsiHKCI	CYCGRG	1 cut(s)	197
BsiSI	CCGG	6 cut(s)	149, 176, 237, 318, 330, 360
BslFI	GGGAC	1 cut(s)	115
BslI	CCNNNNNNNGG	3 cut(s)	44, 99, 480
BsmAI	GTCTC	1 cut(s)	452
BsmFI	GGGAC	1 cut(s)	115
BsnI	GGCC	6 cut(s)	107, 128, 148, 254, 300, 317
Bso31I	GGTCTC	1 cut(s)	452
BsoBI	CYCGRG	1 cut(s)	197
Bsp1286I	GDGCHC	2 cut(s)	156, 198
Bsp143I	GATC	4 cut(s)	168, 201, 459, 476
Bsp19I	CCATGG	1 cut(s)	132
BspANI	GGCC	6 cut(s)	107, 128, 148, 254, 300, 317
BspDI	ATCGAT	1 cut(s)	167
BspLI	GGNNCC	2 cut(s)	58, 91
BspPI	GGATC	2 cut(s)	209, 467
BspT107I	GGYRCC	2 cut(s)	56, 89
BspTNI	GGTCTC	1 cut(s)	452
BsrBI	CCGCTC	2 cut(s)	35, 114
BsrFI	RCCGGY	1 cut(s)	359
BssAI	RCCGGY	1 cut(s)	359
BssECI	CCNNGG	2 cut(s)	52, 132
BssMI	GATC	4 cut(s)	168, 201, 459, 476
BssNI	GRCGYC	3 cut(s)	57, 90, 357
BssSI	CACGAG	2 cut(s)	155, 489
BssT1I	CCWWGG	1 cut(s)	132
Bst2BI	CACGAG	2 cut(s)	155, 489
BstACI	GRCGYC	3 cut(s)	57, 90, 357
BstC8I	GCNNGC	1 cut(s)	307
BstDSI	CCRYGG	1 cut(s)	132
BstF5I	GGATG	2 cut(s)	462, 470
BstH2I	RGCGCY	2 cut(s)	60, 93
BstHHI	GCGC	2 cut(s)	59, 92
BstKTI	GATC	4 cut(s)	171, 204, 462, 479
BstMAI	GTCTC	1 cut(s)	452
BstMBI	GATC	4 cut(s)	168, 201, 459, 476
BstMCI	CGRYCG	2 cut(s)	149, 171
BstMWI	GCNNNNNNNGC	7 cut(s)	54, 65, 120, 151, 306, 335, 388
BstSCI	CCNGG	1 cut(s)	236
BstV1I	GCAGC	2 cut(s)	77, 394
BstV2I	GAAGAC	1 cut(s)	67
BstX2I	RGATCY	1 cut(s)	201
BstYI	RGATCY	1 cut(s)	201
BstZI	CGGCCG	1 cut(s)	146
Bsu15I	ATCGAT	1 cut(s)	167
BsuRI	GGCC	6 cut(s)	107, 128, 148, 254, 300, 317
BsuTUI	ATCGAT	1 cut(s)	167
BtgI	CCRYGG	1 cut(s)	132
BtsCI	GGATG	2 cut(s)	462, 470
Cac8I	GCNNGC	1 cut(s)	307
CfoI	GCGC	2 cut(s)	59, 92
Cfr10I	RCCGGY	1 cut(s)	359
ClaI	ATCGAT	1 cut(s)	167
CseI	GACGC	1 cut(s)	365
Csp6I	GTAC	1 cut(s)	234
CviAII	CATG	2 cut(s)	85, 133
CviQI	GTAC	1 cut(s)	234
DinI	GGCGCC	2 cut(s)	58, 91
DpnI	GATC	4 cut(s)	170, 203, 461, 478
DpnII	GATC	4 cut(s)	168, 201, 459, 476
DrdI	GACNNNNNNGTC	1 cut(s)	362
DseDI	GACNNNNNNGTC	1 cut(s)	362
EaeI	YGGCCR	3 cut(s)	105, 146, 315
EagI	CGGCCG	1 cut(s)	146
EciI	GGCGGA	1 cut(s)	316
Ecl136II	GAGCTC	1 cut(s)	154
EclXI	CGGCCG	1 cut(s)	146
Eco130I	CCWWGG	1 cut(s)	132
Eco24I	GRGCYC	1 cut(s)	156
Eco31I	GGTCTC	1 cut(s)	452
Eco52I	CGGCCG	1 cut(s)	146
Eco53kI	GAGCTC	1 cut(s)	154
Eco57I	CTGAAG	1 cut(s)	447
Eco88I	CYCGRG	1 cut(s)	197
EcoICRI	GAGCTC	1 cut(s)	154
EcoT14I	CCWWGG	1 cut(s)	132
EcoT38I	GRGCYC	1 cut(s)	156
EgeI	GGCGCC	2 cut(s)	58, 91
EheI	GGCGCC	2 cut(s)	58, 91
ErhI	CCWWGG	1 cut(s)	132
FaeI	CATG	2 cut(s)	88, 136
FaiI	YATR	9 cut(s)	86, 99, 134, 185, 207, 218, 282, 404, 444
FaqI	GGGAC	1 cut(s)	115
FatI	CATG	2 cut(s)	84, 132
FauI	CCCGC	1 cut(s)	181
Fnu4HI	GCNGC	7 cut(s)	22, 60, 63, 66, 93, 146, 383
FokI	GGATG	2 cut(s)	449, 457
FriOI	GRGCYC	1 cut(s)	156
Fsp4HI	GCNGC	7 cut(s)	22, 60, 63, 66, 93, 146, 383
GlaI	GCGC	2 cut(s)	58, 91
GluI	GCNGC	7 cut(s)	22, 60, 63, 66, 93, 146, 383
HaeII	RGCGCY	2 cut(s)	60, 93
HaeIII	GGCC	6 cut(s)	107, 128, 148, 254, 300, 317
HapII	CCGG	6 cut(s)	149, 176, 237, 318, 330, 360
HgaI	GACGC	1 cut(s)	365
HhaI	GCGC	2 cut(s)	59, 92
Hin1I	GRCGYC	3 cut(s)	57, 90, 357
Hin1II	CATG	2 cut(s)	88, 136
Hin6I	GCGC	2 cut(s)	57, 90
HinP1I	GCGC	2 cut(s)	57, 90
HinfI	GANTC	2 cut(s)	321, 406
HpaII	CCGG	6 cut(s)	149, 176, 237, 318, 330, 360
HphI	GGTGA	1 cut(s)	365
Hpy188I	TCNGA	1 cut(s)	368
Hpy188III	TCNNGA	3 cut(s)	157, 199, 474
Hpy99I	CGWCG	1 cut(s)	29
HpyAV	CCTTC	3 cut(s)	25, 49, 244
HpyCH4V	TGCA	3 cut(s)	84, 377, 494
HpyF10VI	GCNNNNNNNGC	7 cut(s)	54, 65, 120, 151, 306, 335, 388
Hsp92I	GRCGYC	3 cut(s)	57, 90, 357
Hsp92II	CATG	2 cut(s)	88, 136
HspAI	GCGC	2 cut(s)	57, 90
KasI	GGCGCC	2 cut(s)	56, 89
Kzo9I	GATC	4 cut(s)	168, 201, 459, 476
LmnI	GCTCC	2 cut(s)	40, 151
Lsp1109I	GCAGC	2 cut(s)	77, 394
LweI	GCATC	1 cut(s)	132
MaeIII	GTNAC	1 cut(s)	353
MalI	GATC	4 cut(s)	170, 203, 461, 478
MbiI	CCGCTC	2 cut(s)	35, 114
MboI	GATC	4 cut(s)	168, 201, 459, 476
MboII	GAAGA	2 cut(s)	34, 67
MflI	RGATCY	1 cut(s)	201
MhlI	GDGCHC	2 cut(s)	156, 198
Mly113I	GGCGCC	2 cut(s)	57, 90
MlyI	GAGTC	1 cut(s)	315
MnlI	CCTC	5 cut(s)	62, 80, 139, 425, 476
MseI	TTAA	2 cut(s)	243, 499
MslI	CAYNNNNRTG	1 cut(s)	137
MspA1I	CMGCKG	1 cut(s)	21
MspI	CCGG	6 cut(s)	149, 176, 237, 318, 330, 360
MspR9I	CCNGG	1 cut(s)	238
MwoI	GCNNNNNNNGC	7 cut(s)	54, 65, 120, 151, 306, 335, 388
NarI	GGCGCC	2 cut(s)	57, 90
NciI	CCSGG	1 cut(s)	238
NcoI	CCATGG	1 cut(s)	132
NdeII	GATC	4 cut(s)	168, 201, 459, 476
NlaIII	CATG	2 cut(s)	88, 136
NlaIV	GGNNCC	2 cut(s)	58, 91
NmeAIII	GCCGAG	1 cut(s)	33
NmuCI	GTSAC	1 cut(s)	353
PfeI	GAWTC	1 cut(s)	406
PkrI	GCNGC	7 cut(s)	23, 61, 64, 67, 94, 147, 384
Ple19I	CGATCG	1 cut(s)	171
PleI	GAGTC	1 cut(s)	315
PluTI	GGCGCC	2 cut(s)	60, 93
PpsI	GAGTC	1 cut(s)	315
Psp124BI	GAGCTC	1 cut(s)	156
PspN4I	GGNNCC	2 cut(s)	58, 91
PsuI	RGATCY	1 cut(s)	201
PvuI	CGATCG	1 cut(s)	171
RsaI	GTAC	1 cut(s)	235
RsaNI	GTAC	1 cut(s)	234
RseI	CAYNNNNRTG	1 cut(s)	137
SacI	GAGCTC	1 cut(s)	156
SaqAI	TTAA	2 cut(s)	243, 499
SatI	GCNGC	7 cut(s)	22, 60, 63, 66, 93, 146, 383
Sau3AI	GATC	4 cut(s)	168, 201, 459, 476
SchI	GAGTC	1 cut(s)	315
ScrFI	CCNGG	1 cut(s)	238
SduI	GDGCHC	2 cut(s)	156, 198
SetI	ASST	6 cut(s)	17, 156, 223, 373, 393, 433
SfaNI	GCATC	1 cut(s)	132
SfoI	GGCGCC	2 cut(s)	58, 91
SgrAI	CRCCGGYG	1 cut(s)	359
SmiMI	CAYNNNNRTG	1 cut(s)	137
SspDI	GGCGCC	2 cut(s)	56, 89
SstI	GAGCTC	1 cut(s)	156
StyD4I	CCNGG	1 cut(s)	236
StyI	CCWWGG	1 cut(s)	132
TaqI	TCGA	1 cut(s)	167
TauI	GCSGC	5 cut(s)	24, 62, 65, 95, 148
TfiI	GAWTC	1 cut(s)	406
Tru1I	TTAA	2 cut(s)	243, 499
Tru9I	TTAA	2 cut(s)	243, 499
TseFI	GTSAC	1 cut(s)	353
TseI	GCWGC	2 cut(s)	65, 382
Tsp45I	GTSAC	1 cut(s)	353
TspDTI	ATGAA	1 cut(s)	176
XcmI	CCANNNNNNNNNTGG	1 cut(s)	115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.