Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0003294

Physical Location & Seq

Genomic Coordinates Forward (+)

1329727 .. 1331835

Gene Structure 2109 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1017400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGTCTTCTACAACCTTCAGCGGCGATGAAACGGCACCGTTCTTCGGGTTCCTCGGCGCCGCCGCGGCCCTCGTCTTCTCCTGCATGGGAGCTGCGTACGGGACGGCGAAGAGCGGAGTAGGAGTGGCGTCGATGGGTGTGATGAGGCCGGAGCTGGTGATGAAGTCGATCGTGCCGGTGGTTATGGCGGGAGTGTTGGGTATTTACGGACTTATCATCGCCGTTATCATCAGTACCGGTATCAATCCCAAGGCCAAACCCTATTACCTTTTCGATGGCTATGCTCATCTTTCCTCTGGTCTAGCTTGTGGCCTTGCTGGTCTCTCTGCCGGTATGGCTATCGGCATTGTCGGTGATGCCGGTGTTAGAGCCAATGCACAACAGCCAAAGCTTTTCGTTGGGATGATCCTCATTCTCATTTTTGCTGAAGCGCTTGCTCTGTACGGTCTGATTGTTGGTATCATTCTCTCTTCCCGATCGGGGCAGTCAAGAGCTGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000220 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006885 GO:0007035 GO:0008150 GO:0008324 GO:0009987 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015672 GO:0016020 GO:0016021 GO:0016462 GO:0016469 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019725 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030003 GO:0030004 GO:0030641 GO:0031090 GO:0031224 GO:0032991 GO:0033176 GO:0033177 GO:0033179 GO:0034220 GO:0036442 GO:0042592 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044769 GO:0045851 GO:0046961 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051452 GO:0051453 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098796 GO:0098805 GO:0099131 GO:0099132 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04142 ko04145 ko04721 ko04966 ko05110 ko05120 ko05152 ko05323 map00190 map01100 map04142 map04145 map04721 map04966 map05110 map05120 map05152 map05323

Pfam Domains

Protein Families

ATP-synt_C

Protein Analysis

167

Amino Acids

16.77

Weight (kDa)

8.62

Isoelectric Point (pI)

35.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP-synt_C	PF00137	18 - 77	3.9e-15	ATP synthase subunit C
ATP-synt_C	PF00137	98 - 156	3.1e-18	ATP synthase subunit C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003294)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75630 AT1G75630
fragaria_vesca	FvH4_2g27050
malus_domestica	MD02G1134600.v1.1 MD08G1017400.v1.1 MD08G1161900.v1.1 MD15G1016300.v1.1 MD15G1247900.v1.1 MD15G1347200.v1.1
prunus_persica	Prupe.1G370100_v2.0.a1 Prupe.1G370100_v2.0.a1 Prupe.1G494900_v2.0.a1 Prupe.7G166200_v2.0.a1 Prupe.8G083200_v2.0.a1
pyrus_communis	pycom02g10620 pycom08g01520 pycom15g01430 pycom15g21770 pycom15g31150
rosa_chinensis	RchiOBHm_Chr6g0295951 RchiOBHm_Chr6g0302211
rosa_laevigata	RLG00000011753
rosa_multiflora	Rmu_sc0000529.1_g000004 Rmu_sc0003633.1_g000001
rosa_roxburghii	Rroxscaffold_7G00165990
rosa_rugosa	Rorug06G0255300 Rorug06G0313100
rosa_samantha	Rh6AG369000 Rh6BG376800 Rh6BG476700 Rh6CG382900 Rh6CG438500 Rh6DG369500 Rh6DG425500
rosa_wichuraiana	Rw6G032180 Rw6G036870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	34, 56
AccBSI	CCGCTC	1 cut(s)	114
AccII	CGCG	1 cut(s)	65
AciI	CCGC	6 cut(s)	21, 60, 63, 65, 114, 188
AclWI	GGATC	1 cut(s)	400
AcuI	CTGAAG	1 cut(s)	447
AcyI	GRCGYC	2 cut(s)	57, 128
AfaI	GTAC	3 cut(s)	98, 235, 443
AfeI	AGCGCT	1 cut(s)	432
AfiI	CCNNNNNNNGG	2 cut(s)	44, 480
AgeI	ACCGGT	1 cut(s)	236
AluBI	AGCT	5 cut(s)	92, 154, 305, 391, 494
AluI	AGCT	5 cut(s)	92, 154, 305, 391, 494
Alw26I	GTCTC	1 cut(s)	326
AlwI	GGATC	1 cut(s)	400
Aor51HI	AGCGCT	1 cut(s)	432
AoxI	GGCC	4 cut(s)	66, 146, 252, 310
ApeKI	GCWGC	1 cut(s)	92
AsiGI	ACCGGT	1 cut(s)	236
AspLEI	GCGC	2 cut(s)	59, 433
AspS9I	GGNCC	1 cut(s)	67
AsuHPI	GGTGA	2 cut(s)	169, 365
BanI	GGYRCC	2 cut(s)	34, 56
BbsI	GAAGAC	1 cut(s)	67
BbvI	GCAGC	1 cut(s)	79
BccI	CCATC	2 cut(s)	127, 269
BceAI	ACGGC	3 cut(s)	48, 120, 206
BcgI	CGANNNNNNTGC	2 cut(s)	263, 297
BcoDI	GTCTC	1 cut(s)	326
BfaI	CTAG	2 cut(s)	302, 499
BfoI	RGCGCY	2 cut(s)	60, 434
BglI	GCCNNNNNGGC	2 cut(s)	65, 335
BisI	GCNGC	5 cut(s)	22, 60, 63, 66, 93
BlsI	GCNGC	5 cut(s)	23, 61, 64, 67, 94
BmgT120I	GGNCC	1 cut(s)	67
BmiI	GGNNCC	3 cut(s)	36, 50, 58
BmsI	GCATC	1 cut(s)	346
BpiI	GAAGAC	1 cut(s)	67
BsaHI	GRCGYC	2 cut(s)	57, 128
BsaI	GGTCTC	1 cut(s)	326
BsaJI	CCNNGG	3 cut(s)	52, 63, 249
BsaWI	WCCGGW	1 cut(s)	236
BsaXI	ACNNNNNCTCC	2 cut(s)	108, 138
Bsc4I	CCNNNNNNNGG	2 cut(s)	44, 480
Bse118I	RCCGGY	4 cut(s)	175, 236, 329, 359
BseDI	CCNNGG	3 cut(s)	52, 63, 249
BseGI	GGATG	1 cut(s)	408
BseLI	CCNNNNNNNGG	2 cut(s)	44, 480
BseXI	GCAGC	1 cut(s)	79
Bsh1236I	CGCG	1 cut(s)	65
Bsh1285I	CGRYCG	2 cut(s)	171, 479
BshFI	GGCC	4 cut(s)	68, 148, 254, 312
BshNI	GGYRCC	2 cut(s)	34, 56
BshTI	ACCGGT	1 cut(s)	236
BsiEI	CGRYCG	2 cut(s)	171, 479
BsiSI	CCGG	5 cut(s)	149, 176, 237, 330, 360
BsiWI	CGTACG	1 cut(s)	96
BslFI	GGGAC	1 cut(s)	115
BslI	CCNNNNNNNGG	2 cut(s)	44, 480
BsmAI	GTCTC	1 cut(s)	326
BsmFI	GGGAC	1 cut(s)	115
BsnI	GGCC	4 cut(s)	68, 148, 254, 312
Bso31I	GGTCTC	1 cut(s)	326
Bsp143I	GATC	3 cut(s)	168, 405, 476
BspACI	CCGC	6 cut(s)	21, 60, 63, 65, 114, 188
BspANI	GGCC	4 cut(s)	68, 148, 254, 312
BspFNI	CGCG	1 cut(s)	65
BspLI	GGNNCC	3 cut(s)	36, 50, 58
BspPI	GGATC	1 cut(s)	400
BspQI	GCTCTTC	1 cut(s)	104
BspT107I	GGYRCC	2 cut(s)	34, 56
BspTNI	GGTCTC	1 cut(s)	326
BsrBI	CCGCTC	1 cut(s)	114
BsrFI	RCCGGY	4 cut(s)	175, 236, 329, 359
BssAI	RCCGGY	4 cut(s)	175, 236, 329, 359
BssECI	CCNNGG	3 cut(s)	52, 63, 249
BssMI	GATC	3 cut(s)	168, 405, 476
BssNI	GRCGYC	2 cut(s)	57, 128
BssT1I	CCWWGG	1 cut(s)	249
Bst4CI	ACNGT	2 cut(s)	39, 446
Bst6I	CTCTTC	2 cut(s)	104, 475
BstACI	GRCGYC	2 cut(s)	57, 128
BstC8I	GCNNGC	1 cut(s)	435
BstDSI	CCRYGG	1 cut(s)	63
BstF5I	GGATG	1 cut(s)	408
BstFNI	CGCG	1 cut(s)	65
BstH2I	RGCGCY	2 cut(s)	60, 434
BstHHI	GCGC	2 cut(s)	59, 433
BstKTI	GATC	3 cut(s)	171, 408, 479
BstMAI	GTCTC	1 cut(s)	326
BstMBI	GATC	3 cut(s)	168, 405, 476
BstMCI	CGRYCG	2 cut(s)	171, 479
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 335
BstUI	CGCG	1 cut(s)	65
BstV1I	GCAGC	1 cut(s)	79
BstV2I	GAAGAC	1 cut(s)	67
BsuRI	GGCC	4 cut(s)	68, 148, 254, 312
BtgI	CCRYGG	1 cut(s)	63
BtgZI	GCGATG	2 cut(s)	39, 202
BtsCI	GGATG	1 cut(s)	408
Cac8I	GCNNGC	1 cut(s)	435
CfoI	GCGC	2 cut(s)	59, 433
Cfr10I	RCCGGY	4 cut(s)	175, 236, 329, 359
Cfr13I	GGNCC	1 cut(s)	67
Cfr42I	CCGCGG	1 cut(s)	66
CseI	GACGC	1 cut(s)	117
Csp6I	GTAC	3 cut(s)	97, 234, 442
CspAI	ACCGGT	1 cut(s)	236
CviAII	CATG	1 cut(s)	85
CviQI	GTAC	3 cut(s)	97, 234, 442
DinI	GGCGCC	1 cut(s)	58
DpnI	GATC	3 cut(s)	170, 407, 478
DpnII	GATC	3 cut(s)	168, 405, 476
Eam1104I	CTCTTC	2 cut(s)	104, 475
EarI	CTCTTC	2 cut(s)	104, 475
Eco130I	CCWWGG	1 cut(s)	249
Eco31I	GGTCTC	1 cut(s)	326
Eco47III	AGCGCT	1 cut(s)	432
Eco57I	CTGAAG	1 cut(s)	447
EcoT14I	CCWWGG	1 cut(s)	249
EgeI	GGCGCC	1 cut(s)	58
EheI	GGCGCC	1 cut(s)	58
ErhI	CCWWGG	1 cut(s)	249
FaeI	CATG	1 cut(s)	88
FaiI	YATR	4 cut(s)	86, 185, 282, 335
FaqI	GGGAC	1 cut(s)	115
FatI	CATG	1 cut(s)	84
FauI	CCCGC	1 cut(s)	181
Fnu4HI	GCNGC	5 cut(s)	22, 60, 63, 66, 93
FokI	GGATG	1 cut(s)	415
Fsp4HI	GCNGC	5 cut(s)	22, 60, 63, 66, 93
FspBI	CTAG	2 cut(s)	302, 499
GlaI	GCGC	2 cut(s)	58, 432
GluI	GCNGC	5 cut(s)	22, 60, 63, 66, 93
HaeII	RGCGCY	2 cut(s)	60, 434
HaeIII	GGCC	4 cut(s)	68, 148, 254, 312
HapII	CCGG	5 cut(s)	149, 176, 237, 330, 360
HgaI	GACGC	1 cut(s)	117
HhaI	GCGC	2 cut(s)	59, 433
Hin1I	GRCGYC	2 cut(s)	57, 128
Hin1II	CATG	1 cut(s)	88
Hin6I	GCGC	2 cut(s)	57, 431
HinP1I	GCGC	2 cut(s)	57, 431
HindIII	AAGCTT	1 cut(s)	389
HpaII	CCGG	5 cut(s)	149, 176, 237, 330, 360
HphI	GGTGA	2 cut(s)	169, 365
Hpy188I	TCNGA	1 cut(s)	450
Hpy188III	TCNNGA	2 cut(s)	474, 489
Hpy99I	CGWCG	1 cut(s)	133
HpyAV	CCTTC	1 cut(s)	25
HpyCH4III	ACNGT	2 cut(s)	39, 446
HpyCH4V	TGCA	2 cut(s)	84, 377
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 335
Hsp92I	GRCGYC	2 cut(s)	57, 128
Hsp92II	CATG	1 cut(s)	88
HspAI	GCGC	2 cut(s)	57, 431
KasI	GGCGCC	1 cut(s)	56
KspI	CCGCGG	1 cut(s)	66
Kzo9I	GATC	3 cut(s)	168, 405, 476
LguI	GCTCTTC	1 cut(s)	104
LmnI	GCTCC	2 cut(s)	89, 151
LpnPI	CCDG	9 cut(s)	94, 140, 162, 189, 250, 282, 303, 343, 373
Lsp1109I	GCAGC	1 cut(s)	79
LweI	GCATC	1 cut(s)	346
MaeI	CTAG	2 cut(s)	302, 499
MalI	GATC	3 cut(s)	170, 407, 478
MbiI	CCGCTC	1 cut(s)	114
MboI	GATC	3 cut(s)	168, 405, 476
MboII	GAAGA	4 cut(s)	34, 67, 121, 462
Mly113I	GGCGCC	1 cut(s)	57
MnlI	CCTC	5 cut(s)	62, 80, 138, 304, 419
MspA1I	CMGCKG	2 cut(s)	21, 65
MspI	CCGG	5 cut(s)	149, 176, 237, 330, 360
MvnI	CGCG	1 cut(s)	65
MwoI	GCNNNNNNNGC	2 cut(s)	65, 335
NarI	GGCGCC	1 cut(s)	57
NdeII	GATC	3 cut(s)	168, 405, 476
NlaIII	CATG	1 cut(s)	88
NlaIV	GGNNCC	3 cut(s)	36, 50, 58
NmeAIII	GCCGAG	1 cut(s)	33
PciSI	GCTCTTC	1 cut(s)	104
Pfl23II	CGTACG	1 cut(s)	96
PinAI	ACCGGT	1 cut(s)	236
PkrI	GCNGC	5 cut(s)	23, 61, 64, 67, 94
Ple19I	CGATCG	2 cut(s)	171, 479
PluTI	GGCGCC	1 cut(s)	60
PspLI	CGTACG	1 cut(s)	96
PspN4I	GGNNCC	3 cut(s)	36, 50, 58
PspPI	GGNCC	1 cut(s)	67
PvuI	CGATCG	2 cut(s)	171, 479
RsaI	GTAC	3 cut(s)	98, 235, 443
RsaNI	GTAC	3 cut(s)	97, 234, 442
SacII	CCGCGG	1 cut(s)	66
SapI	GCTCTTC	1 cut(s)	104
SatI	GCNGC	5 cut(s)	22, 60, 63, 66, 93
Sau3AI	GATC	3 cut(s)	168, 405, 476
Sau96I	GGNCC	1 cut(s)	67
SetI	ASST	7 cut(s)	17, 94, 156, 270, 307, 393, 496
SfaNI	GCATC	1 cut(s)	346
SfoI	GGCGCC	1 cut(s)	58
Sfr303I	CCGCGG	1 cut(s)	66
SgrBI	CCGCGG	1 cut(s)	66
SsiI	CCGC	6 cut(s)	21, 60, 63, 65, 114, 188
SspDI	GGCGCC	1 cut(s)	56
SspMI	CTAG	2 cut(s)	302, 499
StyI	CCWWGG	1 cut(s)	249
TaaI	ACNGT	2 cut(s)	39, 446
TaqI	TCGA	3 cut(s)	131, 167, 273
TauI	GCSGC	4 cut(s)	24, 62, 65, 68
TseI	GCWGC	1 cut(s)	92
TspDTI	ATGAA	2 cut(s)	42, 176
TspGWI	ACGGA	1 cut(s)	222
XspI	CTAG	2 cut(s)	302, 499

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.