Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0003294

Physical Location & Seq

Genomic Coordinates Forward (+)

21584161 .. 21586434

Gene Structure 2274 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g27050.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGCTTCCTCTTCTTTCAGCGGCGACGAGACCGCTCCCTTCTTCGGCTTCCTCGGCGCCGCCGCAGCTCTCGTCTTCTCCTGCATGGGCGCCGCGTACGGCACCGCGAAGAGCGGAGTCGGCGTGGCCTCGATGGGAGTGATGCGGCCGGAGCTGGTCATGAAATCGATCGTTCCGGTGGTTATGGCTGGAGTGCTTGGGATCTACGGGCTCATCATTGCTGTGATTATCAGCACCGGGATTAATCCCAAGGCCAAGTCTTATTACCTGTTTGATGGATATGCTCACTTGTCCTCTGGCCTTGCTTGTGGCCTCGCCGGGCTCTCCGCCGGAATGGCCATCGGGATCGTCGGTGACGCCGGTGTCCGGGCCAATGCACAGCAGCCAAAGCTCTTTGTTGGCATGATCCTTATCCTCATCTTTGCTGAAGCTCTTGCTTTGTACGGTCTCATTGTGGGGATTATTCTCTCATCCCGAGCAGGGCAATCTCGTGCAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000220 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006885 GO:0007035 GO:0008150 GO:0008324 GO:0009987 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015672 GO:0016020 GO:0016021 GO:0016462 GO:0016469 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019725 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030003 GO:0030004 GO:0030641 GO:0031090 GO:0031224 GO:0032991 GO:0033176 GO:0033177 GO:0033179 GO:0034220 GO:0036442 GO:0042592 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044769 GO:0045851 GO:0046961 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051452 GO:0051453 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098796 GO:0098805 GO:0099131 GO:0099132 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04142 ko04145 ko04721 ko04966 ko05110 ko05120 ko05152 ko05323 map00190 map01100 map04142 map04145 map04721 map04966 map05110 map05120 map05152 map05323

Pfam Domains

Protein Families

ATP-synt_C

Protein Analysis

167

Amino Acids

16.7

Weight (kDa)

8.62

Isoelectric Point (pI)

32.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP-synt_C	PF00137	18 - 77	3.9e-15	ATP synthase subunit C
ATP-synt_C	PF00137	98 - 156	3.1e-18	ATP synthase subunit C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003294)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75630 AT1G75630
fragaria_vesca	FvH4_2g27050
malus_domestica	MD02G1134600.v1.1 MD08G1017400.v1.1 MD08G1161900.v1.1 MD15G1016300.v1.1 MD15G1247900.v1.1 MD15G1347200.v1.1
prunus_persica	Prupe.1G370100_v2.0.a1 Prupe.1G370100_v2.0.a1 Prupe.1G494900_v2.0.a1 Prupe.7G166200_v2.0.a1 Prupe.8G083200_v2.0.a1
pyrus_communis	pycom02g10620 pycom08g01520 pycom15g01430 pycom15g21770 pycom15g31150
rosa_chinensis	RchiOBHm_Chr6g0295951 RchiOBHm_Chr6g0302211
rosa_laevigata	RLG00000011753
rosa_multiflora	Rmu_sc0000529.1_g000004 Rmu_sc0003633.1_g000001
rosa_roxburghii	Rroxscaffold_7G00165990
rosa_rugosa	Rorug06G0255300 Rorug06G0313100
rosa_samantha	Rh6AG369000 Rh6BG376800 Rh6BG476700 Rh6CG382900 Rh6CG438500 Rh6DG369500 Rh6DG425500
rosa_wichuraiana	Rw6G032180 Rw6G036870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	362
AccB1I	GGYRCC	3 cut(s)	56, 89, 101
AccBSI	CCGCTC	2 cut(s)	35, 114
AccII	CGCG	2 cut(s)	95, 107
AciI	CCGC	9 cut(s)	21, 33, 60, 63, 93, 105, 114, 145, 327
AclWI	GGATC	3 cut(s)	209, 353, 400
AcoI	YGGCCR	2 cut(s)	146, 336
AcuI	CTGAAG	1 cut(s)	447
AcyI	GRCGYC	3 cut(s)	57, 90, 357
AfaI	GTAC	2 cut(s)	98, 443
AfiI	CCNNNNNNNGG	3 cut(s)	44, 366, 480
AluBI	AGCT	4 cut(s)	68, 154, 391, 431
AluI	AGCT	4 cut(s)	68, 154, 391, 431
Alw26I	GTCTC	2 cut(s)	23, 452
AlwI	GGATC	3 cut(s)	209, 353, 400
Ama87I	CYCGRG	1 cut(s)	474
AoxI	GGCC	7 cut(s)	126, 146, 252, 298, 310, 336, 369
ApeKI	GCWGC	2 cut(s)	65, 382
AseI	ATTAAT	1 cut(s)	243
AspLEI	GCGC	2 cut(s)	59, 92
AspS9I	GGNCC	1 cut(s)	369
AsuC2I	CCSGG	3 cut(s)	238, 319, 368
AsuHPI	GGTGA	1 cut(s)	365
AvaI	CYCGRG	1 cut(s)	474
BalI	TGGCCA	1 cut(s)	338
BanI	GGYRCC	3 cut(s)	56, 89, 101
BanII	GRGCYC	2 cut(s)	213, 324
BauI	CACGAG	1 cut(s)	489
BbsI	GAAGAC	1 cut(s)	67
BbvI	GCAGC	2 cut(s)	77, 394
BccI	CCATC	3 cut(s)	127, 269, 347
BceAI	ACGGC	1 cut(s)	115
BcnI	CCSGG	3 cut(s)	238, 319, 368
BcoDI	GTCTC	2 cut(s)	23, 452
BfoI	RGCGCY	2 cut(s)	60, 93
BglI	GCCNNNNNGGC	1 cut(s)	335
BisI	GCNGC	7 cut(s)	22, 60, 63, 66, 93, 146, 383
BlsI	GCNGC	7 cut(s)	23, 61, 64, 67, 94, 147, 384
Bme1390I	CCNGG	3 cut(s)	238, 319, 368
BmeT110I	CYCGRG	1 cut(s)	474
BmgT120I	GGNCC	1 cut(s)	369
BmiI	GGNNCC	3 cut(s)	58, 91, 103
BmrFI	CCNGG	3 cut(s)	238, 319, 368
BmsI	GCATC	1 cut(s)	132
BpiI	GAAGAC	1 cut(s)	67
BpmI	CTGGAG	1 cut(s)	210
BpuMI	CCSGG	3 cut(s)	238, 319, 368
Bsa29I	ATCGAT	1 cut(s)	167
BsaBI	GATNNNNATC	1 cut(s)	410
BsaHI	GRCGYC	3 cut(s)	57, 90, 357
BsaI	GGTCTC	2 cut(s)	23, 452
BsaJI	CCNNGG	2 cut(s)	52, 249
BsaWI	WCCGGW	1 cut(s)	175
BsaXI	ACNNNNNCTCC	2 cut(s)	108, 138
Bsc4I	CCNNNNNNNGG	3 cut(s)	44, 366, 480
Bse118I	RCCGGY	1 cut(s)	359
Bse3DI	GCAATG	1 cut(s)	216
Bse8I	GATNNNNATC	1 cut(s)	410
BseCI	ATCGAT	1 cut(s)	167
BseDI	CCNNGG	2 cut(s)	52, 249
BseGI	GGATG	1 cut(s)	470
BseJI	GATNNNNATC	1 cut(s)	410
BseLI	CCNNNNNNNGG	3 cut(s)	44, 366, 480
BseMI	GCAATG	1 cut(s)	216
BseX3I	CGGCCG	1 cut(s)	146
BseXI	GCAGC	2 cut(s)	77, 394
Bsh1236I	CGCG	2 cut(s)	95, 107
Bsh1285I	CGRYCG	2 cut(s)	149, 171
BshFI	GGCC	7 cut(s)	128, 148, 254, 300, 312, 338, 371
BshNI	GGYRCC	3 cut(s)	56, 89, 101
BshVI	ATCGAT	1 cut(s)	167
BsiEI	CGRYCG	2 cut(s)	149, 171
BsiHKCI	CYCGRG	1 cut(s)	474
BsiSI	CCGG	7 cut(s)	149, 176, 237, 318, 330, 360, 367
BsiWI	CGTACG	1 cut(s)	96
BslI	CCNNNNNNNGG	3 cut(s)	44, 366, 480
BsmAI	GTCTC	2 cut(s)	23, 452
BsnI	GGCC	7 cut(s)	128, 148, 254, 300, 312, 338, 371
Bso31I	GGTCTC	2 cut(s)	23, 452
BsoBI	CYCGRG	1 cut(s)	474
Bsp1286I	GDGCHC	2 cut(s)	213, 324
Bsp143I	GATC	4 cut(s)	168, 201, 345, 405
BspACI	CCGC	9 cut(s)	21, 33, 60, 63, 93, 105, 114, 145, 327
BspANI	GGCC	7 cut(s)	128, 148, 254, 300, 312, 338, 371
BspDI	ATCGAT	1 cut(s)	167
BspFNI	CGCG	2 cut(s)	95, 107
BspHI	TCATGA	1 cut(s)	159
BspLI	GGNNCC	3 cut(s)	58, 91, 103
BspPI	GGATC	3 cut(s)	209, 353, 400
BspQI	GCTCTTC	1 cut(s)	104
BspT107I	GGYRCC	3 cut(s)	56, 89, 101
BspTNI	GGTCTC	2 cut(s)	23, 452
BsrBI	CCGCTC	2 cut(s)	35, 114
BsrDI	GCAATG	1 cut(s)	216
BsrFI	RCCGGY	1 cut(s)	359
BssAI	RCCGGY	1 cut(s)	359
BssECI	CCNNGG	2 cut(s)	52, 249
BssMI	GATC	4 cut(s)	168, 201, 345, 405
BssNI	GRCGYC	3 cut(s)	57, 90, 357
BssSI	CACGAG	1 cut(s)	489
BssT1I	CCWWGG	1 cut(s)	249
Bst2BI	CACGAG	1 cut(s)	489
Bst4CI	ACNGT	1 cut(s)	446
Bst6I	CTCTTC	2 cut(s)	16, 104
BstACI	GRCGYC	3 cut(s)	57, 90, 357
BstF5I	GGATG	1 cut(s)	470
BstFNI	CGCG	2 cut(s)	95, 107
BstH2I	RGCGCY	2 cut(s)	60, 93
BstHHI	GCGC	2 cut(s)	59, 92
BstKTI	GATC	4 cut(s)	171, 204, 348, 408
BstMAI	GTCTC	2 cut(s)	23, 452
BstMBI	GATC	4 cut(s)	168, 201, 345, 405
BstMCI	CGRYCG	2 cut(s)	149, 171
BstMWI	GCNNNNNNNGC	6 cut(s)	54, 65, 120, 151, 335, 388
BstSCI	CCNGG	3 cut(s)	236, 317, 366
BstUI	CGCG	2 cut(s)	95, 107
BstV1I	GCAGC	2 cut(s)	77, 394
BstV2I	GAAGAC	1 cut(s)	67
BstX2I	RGATCY	1 cut(s)	201
BstYI	RGATCY	1 cut(s)	201
BstZI	CGGCCG	1 cut(s)	146
Bsu15I	ATCGAT	1 cut(s)	167
BsuRI	GGCC	7 cut(s)	128, 148, 254, 300, 312, 338, 371
BsuTUI	ATCGAT	1 cut(s)	167
BtsCI	GGATG	1 cut(s)	470
CciI	TCATGA	1 cut(s)	159
CfoI	GCGC	2 cut(s)	59, 92
Cfr10I	RCCGGY	1 cut(s)	359
Cfr13I	GGNCC	1 cut(s)	369
ClaI	ATCGAT	1 cut(s)	167
CseI	GACGC	1 cut(s)	365
Csp6I	GTAC	2 cut(s)	97, 442
CviAII	CATG	3 cut(s)	85, 160, 403
CviQI	GTAC	2 cut(s)	97, 442
DinI	GGCGCC	2 cut(s)	58, 91
DpnI	GATC	4 cut(s)	170, 203, 347, 407
DpnII	GATC	4 cut(s)	168, 201, 345, 405
DrdI	GACNNNNNNGTC	1 cut(s)	362
DseDI	GACNNNNNNGTC	1 cut(s)	362
EaeI	YGGCCR	2 cut(s)	146, 336
EagI	CGGCCG	1 cut(s)	146
Eam1104I	CTCTTC	2 cut(s)	16, 104
EarI	CTCTTC	2 cut(s)	16, 104
EciI	GGCGGA	1 cut(s)	316
EclXI	CGGCCG	1 cut(s)	146
Eco130I	CCWWGG	1 cut(s)	249
Eco24I	GRGCYC	2 cut(s)	213, 324
Eco31I	GGTCTC	2 cut(s)	23, 452
Eco52I	CGGCCG	1 cut(s)	146
Eco57I	CTGAAG	1 cut(s)	447
Eco88I	CYCGRG	1 cut(s)	474
EcoT14I	CCWWGG	1 cut(s)	249
EcoT38I	GRGCYC	2 cut(s)	213, 324
EgeI	GGCGCC	2 cut(s)	58, 91
EheI	GGCGCC	2 cut(s)	58, 91
ErhI	CCWWGG	1 cut(s)	249
FaeI	CATG	3 cut(s)	88, 163, 406
FaiI	YATR	5 cut(s)	86, 161, 185, 282, 404
FatI	CATG	3 cut(s)	84, 159, 402
Fnu4HI	GCNGC	7 cut(s)	22, 60, 63, 66, 93, 146, 383
FokI	GGATG	1 cut(s)	457
FriOI	GRGCYC	2 cut(s)	213, 324
Fsp4HI	GCNGC	7 cut(s)	22, 60, 63, 66, 93, 146, 383
GlaI	GCGC	2 cut(s)	58, 91
GluI	GCNGC	7 cut(s)	22, 60, 63, 66, 93, 146, 383
GsuI	CTGGAG	1 cut(s)	210
HaeII	RGCGCY	2 cut(s)	60, 93
HaeIII	GGCC	7 cut(s)	128, 148, 254, 300, 312, 338, 371
HapII	CCGG	7 cut(s)	149, 176, 237, 318, 330, 360, 367
HgaI	GACGC	1 cut(s)	365
HhaI	GCGC	2 cut(s)	59, 92
Hin1I	GRCGYC	3 cut(s)	57, 90, 357
Hin1II	CATG	3 cut(s)	88, 163, 406
Hin6I	GCGC	2 cut(s)	57, 90
HinP1I	GCGC	2 cut(s)	57, 90
HinfI	GANTC	1 cut(s)	117
HpaII	CCGG	7 cut(s)	149, 176, 237, 318, 330, 360, 367
HphI	GGTGA	1 cut(s)	365
Hpy188III	TCNNGA	3 cut(s)	160, 343, 474
Hpy99I	CGWCG	2 cut(s)	29, 353
HpyAV	CCTTC	1 cut(s)	49
HpyCH4III	ACNGT	1 cut(s)	446
HpyCH4V	TGCA	3 cut(s)	84, 377, 494
HpyF10VI	GCNNNNNNNGC	6 cut(s)	54, 65, 120, 151, 335, 388
Hsp92I	GRCGYC	3 cut(s)	57, 90, 357
Hsp92II	CATG	3 cut(s)	88, 163, 406
HspAI	GCGC	2 cut(s)	57, 90
KasI	GGCGCC	2 cut(s)	56, 89
Kzo9I	GATC	4 cut(s)	168, 201, 345, 405
LguI	GCTCTTC	1 cut(s)	104
LmnI	GCTCC	2 cut(s)	40, 151
Lsp1109I	GCAGC	2 cut(s)	77, 394
LweI	GCATC	1 cut(s)	132
MaeIII	GTNAC	1 cut(s)	353
MalI	GATC	4 cut(s)	170, 203, 347, 407
MbiI	CCGCTC	2 cut(s)	35, 114
MboI	GATC	4 cut(s)	168, 201, 345, 405
MboII	GAAGA	4 cut(s)	3, 34, 67, 121
MflI	RGATCY	1 cut(s)	201
MhlI	GDGCHC	2 cut(s)	213, 324
MlsI	TGGCCA	1 cut(s)	338
MluNI	TGGCCA	1 cut(s)	338
Mly113I	GGCGCC	2 cut(s)	57, 90
MlyI	GAGTC	1 cut(s)	126
MnlI	CCTC	6 cut(s)	19, 62, 139, 304, 323, 425
Mox20I	TGGCCA	1 cut(s)	338
MscI	TGGCCA	1 cut(s)	338
MseI	TTAA	1 cut(s)	243
MslI	CAYNNNNRTG	1 cut(s)	221
Msp20I	TGGCCA	1 cut(s)	338
MspA1I	CMGCKG	1 cut(s)	21
MspI	CCGG	7 cut(s)	149, 176, 237, 318, 330, 360, 367
MspR9I	CCNGG	3 cut(s)	238, 319, 368
MvnI	CGCG	2 cut(s)	95, 107
MwoI	GCNNNNNNNGC	6 cut(s)	54, 65, 120, 151, 335, 388
NarI	GGCGCC	2 cut(s)	57, 90
NciI	CCSGG	3 cut(s)	238, 319, 368
NdeII	GATC	4 cut(s)	168, 201, 345, 405
NlaIII	CATG	3 cut(s)	88, 163, 406
NlaIV	GGNNCC	3 cut(s)	58, 91, 103
NmeAIII	GCCGAG	1 cut(s)	33
NmuCI	GTSAC	1 cut(s)	353
PagI	TCATGA	1 cut(s)	159
PciSI	GCTCTTC	1 cut(s)	104
Pfl23II	CGTACG	1 cut(s)	96
PkrI	GCNGC	7 cut(s)	23, 61, 64, 67, 94, 147, 384
Ple19I	CGATCG	1 cut(s)	171
PleI	GAGTC	1 cut(s)	125
PluTI	GGCGCC	2 cut(s)	60, 93
PpsI	GAGTC	1 cut(s)	125
PshBI	ATTAAT	1 cut(s)	243
PspLI	CGTACG	1 cut(s)	96
PspN4I	GGNNCC	3 cut(s)	58, 91, 103
PspPI	GGNCC	1 cut(s)	369
PsuI	RGATCY	1 cut(s)	201
PvuI	CGATCG	1 cut(s)	171
RsaI	GTAC	2 cut(s)	98, 443
RsaNI	GTAC	2 cut(s)	97, 442
RseI	CAYNNNNRTG	1 cut(s)	221
SapI	GCTCTTC	1 cut(s)	104
SaqAI	TTAA	1 cut(s)	243
SatI	GCNGC	7 cut(s)	22, 60, 63, 66, 93, 146, 383
Sau3AI	GATC	4 cut(s)	168, 201, 345, 405
Sau96I	GGNCC	1 cut(s)	369
SchI	GAGTC	1 cut(s)	126
ScrFI	CCNGG	3 cut(s)	238, 319, 368
SduI	GDGCHC	2 cut(s)	213, 324
SetI	ASST	5 cut(s)	70, 156, 270, 393, 433
SfaNI	GCATC	1 cut(s)	132
SfoI	GGCGCC	2 cut(s)	58, 91
SgrAI	CRCCGGYG	1 cut(s)	359
SmiMI	CAYNNNNRTG	1 cut(s)	221
SsiI	CCGC	9 cut(s)	21, 33, 60, 63, 93, 105, 114, 145, 327
SspDI	GGCGCC	2 cut(s)	56, 89
StyD4I	CCNGG	3 cut(s)	236, 317, 366
StyI	CCWWGG	1 cut(s)	249
TaaI	ACNGT	1 cut(s)	446
TaqI	TCGA	2 cut(s)	131, 167
TauI	GCSGC	5 cut(s)	24, 62, 65, 95, 148
Tru1I	TTAA	1 cut(s)	243
Tru9I	TTAA	1 cut(s)	243
TseFI	GTSAC	1 cut(s)	353
TseI	GCWGC	2 cut(s)	65, 382
Tsp45I	GTSAC	1 cut(s)	353
TspDTI	ATGAA	1 cut(s)	176
VspI	ATTAAT	1 cut(s)	243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.