Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0003294

Physical Location & Seq

Genomic Coordinates Forward (+)

20623376 .. 20625752

Gene Structure 2377 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1247900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGCGTCATCCACCTTCAGCGGCGATGAAACGGCACCGTTCTTCGGCTTTCTCGGCGCGGCGGCCGCCCTCGTCTTTTCCTGCATGGGAGCGGCGTACGGGACGGCGAAGAGCGGCGTGGGAGTGGCGTCGATGGGGGTGATGAGGCCGGAGCTGGTGATGAAGTCGATTGTTCCGGTTGTTATGGCGGGAGTGTTGGGTATCTACGGTTTGATCATTGCTGTGATTATCAGCACTGGGATTAACCCAAAGGCCAAATCTTACTACCTCTTCGATGGGTACGCCCACCTCTCCTCCGGTCTCGCTTGTGGACTTGCCGGACTTTCCGCCGGAATGGCCATCGGCATCGTCGGCGATGCCGGTGTTAGGGCAAACGCACAACAGCCCAAGCTTTTTGTTGGGATGATTCTCATTCTCATCTTTGCTGAAGCTTTGGCTTTGTACGGTCTTATTGTCGGTATCATCCTTTCATCCCGATCTGGACAGTCCAGAGCAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000220 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006885 GO:0007035 GO:0008150 GO:0008324 GO:0009987 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015672 GO:0016020 GO:0016021 GO:0016462 GO:0016469 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019725 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030003 GO:0030004 GO:0030641 GO:0031090 GO:0031224 GO:0032991 GO:0033176 GO:0033177 GO:0033179 GO:0034220 GO:0036442 GO:0042592 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044769 GO:0045851 GO:0046961 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051452 GO:0051453 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098796 GO:0098805 GO:0099131 GO:0099132 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04142 ko04145 ko04721 ko04966 ko05110 ko05120 ko05152 ko05323 map00190 map01100 map04142 map04145 map04721 map04966 map05110 map05120 map05152 map05323

Pfam Domains

Protein Families

ATP-synt_C

Protein Analysis

167

Amino Acids

16.73

Weight (kDa)

8.62

Isoelectric Point (pI)

34.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP-synt_C	PF00137	18 - 77	3.9e-15	ATP synthase subunit C
ATP-synt_C	PF00137	98 - 156	3.1e-18	ATP synthase subunit C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003294)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75630 AT1G75630
fragaria_vesca	FvH4_2g27050
malus_domestica	MD02G1134600.v1.1 MD08G1017400.v1.1 MD08G1161900.v1.1 MD15G1016300.v1.1 MD15G1247900.v1.1 MD15G1347200.v1.1
prunus_persica	Prupe.1G370100_v2.0.a1 Prupe.1G370100_v2.0.a1 Prupe.1G494900_v2.0.a1 Prupe.7G166200_v2.0.a1 Prupe.8G083200_v2.0.a1
pyrus_communis	pycom02g10620 pycom08g01520 pycom15g01430 pycom15g21770 pycom15g31150
rosa_chinensis	RchiOBHm_Chr6g0295951 RchiOBHm_Chr6g0302211
rosa_laevigata	RLG00000011753
rosa_multiflora	Rmu_sc0000529.1_g000004 Rmu_sc0003633.1_g000001
rosa_roxburghii	Rroxscaffold_7G00165990
rosa_rugosa	Rorug06G0255300 Rorug06G0313100
rosa_samantha	Rh6AG369000 Rh6BG376800 Rh6BG476700 Rh6CG382900 Rh6CG438500 Rh6DG369500 Rh6DG425500
rosa_wichuraiana	Rw6G032180 Rw6G036870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	34
AccBSI	CCGCTC	2 cut(s)	92, 114
AccII	CGCG	1 cut(s)	59
AciI	CCGC	8 cut(s)	21, 59, 62, 66, 92, 114, 188, 327
AcoI	YGGCCR	2 cut(s)	63, 336
AcuI	CTGAAG	1 cut(s)	447
AcyI	GRCGYC	2 cut(s)	5, 128
AfaI	GTAC	3 cut(s)	98, 281, 443
AfiI	CCNNNNNNNGG	2 cut(s)	44, 366
AluBI	AGCT	3 cut(s)	154, 391, 431
AluI	AGCT	3 cut(s)	154, 391, 431
Alw26I	GTCTC	1 cut(s)	305
AoxI	GGCC	4 cut(s)	63, 146, 252, 336
AspLEI	GCGC	1 cut(s)	59
AsuHPI	GGTGA	2 cut(s)	151, 169
BalI	TGGCCA	1 cut(s)	338
BanI	GGYRCC	1 cut(s)	34
BccI	CCATC	3 cut(s)	127, 269, 347
BceAI	ACGGC	2 cut(s)	48, 120
BclI	TGATCA	1 cut(s)	213
BcoDI	GTCTC	1 cut(s)	305
BglI	GCCNNNNNGGC	1 cut(s)	335
BisI	GCNGC	6 cut(s)	22, 60, 63, 66, 93, 115
BlsI	GCNGC	6 cut(s)	23, 61, 64, 67, 94, 116
BmiI	GGNNCC	1 cut(s)	36
BmrI	ACTGGG	1 cut(s)	246
BmsI	GCATC	2 cut(s)	346, 354
BmuI	ACTGGG	1 cut(s)	246
BsaHI	GRCGYC	2 cut(s)	5, 128
BsaI	GGTCTC	1 cut(s)	305
BsaWI	WCCGGW	2 cut(s)	175, 296
BsaXI	ACNNNNNCTCC	2 cut(s)	278, 308
Bsc4I	CCNNNNNNNGG	2 cut(s)	44, 366
Bse118I	RCCGGY	1 cut(s)	359
Bse1I	ACTGG	1 cut(s)	241
Bse3DI	GCAATG	1 cut(s)	216
BseGI	GGATG	4 cut(s)	8, 408, 462, 470
BseLI	CCNNNNNNNGG	2 cut(s)	44, 366
BseMI	GCAATG	1 cut(s)	216
BseNI	ACTGG	1 cut(s)	241
BseRI	GAGGAG	1 cut(s)	283
BseX3I	CGGCCG	1 cut(s)	63
Bsh1236I	CGCG	1 cut(s)	59
Bsh1285I	CGRYCG	1 cut(s)	66
BshFI	GGCC	4 cut(s)	65, 148, 254, 338
BshNI	GGYRCC	1 cut(s)	34
BsiEI	CGRYCG	1 cut(s)	66
BsiSI	CCGG	6 cut(s)	149, 176, 297, 318, 330, 360
BsiWI	CGTACG	1 cut(s)	96
BslFI	GGGAC	1 cut(s)	115
BslI	CCNNNNNNNGG	2 cut(s)	44, 366
BsmAI	GTCTC	1 cut(s)	305
BsmFI	GGGAC	1 cut(s)	115
BsnI	GGCC	4 cut(s)	65, 148, 254, 338
Bso31I	GGTCTC	1 cut(s)	305
Bsp143I	GATC	2 cut(s)	213, 476
BspACI	CCGC	8 cut(s)	21, 59, 62, 66, 92, 114, 188, 327
BspANI	GGCC	4 cut(s)	65, 148, 254, 338
BspFNI	CGCG	1 cut(s)	59
BspLI	GGNNCC	1 cut(s)	36
BspQI	GCTCTTC	1 cut(s)	104
BspT107I	GGYRCC	1 cut(s)	34
BspTNI	GGTCTC	1 cut(s)	305
BsrBI	CCGCTC	2 cut(s)	92, 114
BsrDI	GCAATG	1 cut(s)	216
BsrFI	RCCGGY	1 cut(s)	359
BsrI	ACTGG	1 cut(s)	241
BssAI	RCCGGY	1 cut(s)	359
BssMI	GATC	2 cut(s)	213, 476
BssNI	GRCGYC	2 cut(s)	5, 128
Bst4CI	ACNGT	4 cut(s)	39, 209, 446, 486
Bst6I	CTCTTC	2 cut(s)	104, 275
BstACI	GRCGYC	2 cut(s)	5, 128
BstF5I	GGATG	4 cut(s)	8, 408, 462, 470
BstFNI	CGCG	1 cut(s)	59
BstHHI	GCGC	1 cut(s)	59
BstKTI	GATC	2 cut(s)	216, 479
BstMAI	GTCTC	1 cut(s)	305
BstMBI	GATC	2 cut(s)	213, 476
BstMCI	CGRYCG	1 cut(s)	66
BstMWI	GCNNNNNNNGC	4 cut(s)	54, 65, 335, 351
BstUI	CGCG	1 cut(s)	59
BstZI	CGGCCG	1 cut(s)	63
BsuRI	GGCC	4 cut(s)	65, 148, 254, 338
BtgZI	GCGATG	2 cut(s)	39, 369
BtsCI	GGATG	4 cut(s)	8, 408, 462, 470
BtsIMutI	CAGTG	1 cut(s)	234
CciNI	GCGGCCGC	1 cut(s)	63
CfoI	GCGC	1 cut(s)	59
Cfr10I	RCCGGY	1 cut(s)	359
CseI	GACGC	1 cut(s)	117
Csp6I	GTAC	3 cut(s)	97, 280, 442
CviAII	CATG	1 cut(s)	85
CviQI	GTAC	3 cut(s)	97, 280, 442
DpnI	GATC	2 cut(s)	215, 478
DpnII	GATC	2 cut(s)	213, 476
EaeI	YGGCCR	2 cut(s)	63, 336
EagI	CGGCCG	1 cut(s)	63
Eam1104I	CTCTTC	2 cut(s)	104, 275
EarI	CTCTTC	2 cut(s)	104, 275
EciI	GGCGGA	1 cut(s)	316
EclXI	CGGCCG	1 cut(s)	63
Eco31I	GGTCTC	1 cut(s)	305
Eco52I	CGGCCG	1 cut(s)	63
Eco57I	CTGAAG	1 cut(s)	447
FaeI	CATG	1 cut(s)	88
FaiI	YATR	2 cut(s)	86, 185
FaqI	GGGAC	1 cut(s)	115
FatI	CATG	1 cut(s)	84
FauI	CCCGC	1 cut(s)	181
FbaI	TGATCA	1 cut(s)	213
Fnu4HI	GCNGC	6 cut(s)	22, 60, 63, 66, 93, 115
FokI	GGATG	3 cut(s)	415, 449, 457
Fsp4HI	GCNGC	6 cut(s)	22, 60, 63, 66, 93, 115
GlaI	GCGC	1 cut(s)	58
GluI	GCNGC	6 cut(s)	22, 60, 63, 66, 93, 115
HaeIII	GGCC	4 cut(s)	65, 148, 254, 338
HapII	CCGG	6 cut(s)	149, 176, 297, 318, 330, 360
HgaI	GACGC	1 cut(s)	117
HhaI	GCGC	1 cut(s)	59
Hin1I	GRCGYC	2 cut(s)	5, 128
Hin1II	CATG	1 cut(s)	88
Hin6I	GCGC	1 cut(s)	57
HinP1I	GCGC	1 cut(s)	57
HindIII	AAGCTT	2 cut(s)	389, 429
HinfI	GANTC	1 cut(s)	406
HpaII	CCGG	6 cut(s)	149, 176, 297, 318, 330, 360
HphI	GGTGA	2 cut(s)	151, 169
Hpy166II	GTNNAC	1 cut(s)	311
Hpy188III	TCNNGA	3 cut(s)	474, 480, 489
Hpy8I	GTNNAC	1 cut(s)	311
Hpy99I	CGWCG	2 cut(s)	133, 353
HpyAV	CCTTC	1 cut(s)	25
HpyCH4III	ACNGT	4 cut(s)	39, 209, 446, 486
HpyCH4V	TGCA	1 cut(s)	84
HpyF10VI	GCNNNNNNNGC	4 cut(s)	54, 65, 335, 351
Hsp92I	GRCGYC	2 cut(s)	5, 128
Hsp92II	CATG	1 cut(s)	88
HspAI	GCGC	1 cut(s)	57
Ksp22I	TGATCA	1 cut(s)	213
Kzo9I	GATC	2 cut(s)	213, 476
LguI	GCTCTTC	1 cut(s)	104
LmnI	GCTCC	2 cut(s)	89, 151
LweI	GCATC	2 cut(s)	346, 354
MalI	GATC	2 cut(s)	215, 478
MbiI	CCGCTC	2 cut(s)	92, 114
MboI	GATC	2 cut(s)	213, 476
MboII	GAAGA	3 cut(s)	34, 121, 262
MlsI	TGGCCA	1 cut(s)	338
MluNI	TGGCCA	1 cut(s)	338
MnlI	CCTC	5 cut(s)	80, 138, 278, 299, 304
Mox20I	TGGCCA	1 cut(s)	338
MscI	TGGCCA	1 cut(s)	338
MseI	TTAA	1 cut(s)	243
MslI	CAYNNNNRTG	1 cut(s)	221
Msp20I	TGGCCA	1 cut(s)	338
MspA1I	CMGCKG	1 cut(s)	21
MspI	CCGG	6 cut(s)	149, 176, 297, 318, 330, 360
MvnI	CGCG	1 cut(s)	59
MwoI	GCNNNNNNNGC	4 cut(s)	54, 65, 335, 351
NdeII	GATC	2 cut(s)	213, 476
NlaIII	CATG	1 cut(s)	88
NlaIV	GGNNCC	1 cut(s)	36
NmeAIII	GCCGAG	1 cut(s)	33
NotI	GCGGCCGC	1 cut(s)	63
PciSI	GCTCTTC	1 cut(s)	104
PfeI	GAWTC	1 cut(s)	406
Pfl23II	CGTACG	1 cut(s)	96
PkrI	GCNGC	6 cut(s)	23, 61, 64, 67, 94, 116
PspLI	CGTACG	1 cut(s)	96
PspN4I	GGNNCC	1 cut(s)	36
RsaI	GTAC	3 cut(s)	98, 281, 443
RsaNI	GTAC	3 cut(s)	97, 280, 442
RseI	CAYNNNNRTG	1 cut(s)	221
SapI	GCTCTTC	1 cut(s)	104
SaqAI	TTAA	1 cut(s)	243
SatI	GCNGC	6 cut(s)	22, 60, 63, 66, 93, 115
Sau3AI	GATC	2 cut(s)	213, 476
SetI	ASST	6 cut(s)	17, 156, 270, 291, 393, 433
SfaNI	GCATC	2 cut(s)	346, 354
SmiMI	CAYNNNNRTG	1 cut(s)	221
SsiI	CCGC	8 cut(s)	21, 59, 62, 66, 92, 114, 188, 327
TaaI	ACNGT	4 cut(s)	39, 209, 446, 486
TaqI	TCGA	3 cut(s)	131, 167, 273
TauI	GCSGC	6 cut(s)	24, 62, 65, 68, 95, 117
TfiI	GAWTC	1 cut(s)	406
Tru1I	TTAA	1 cut(s)	243
Tru9I	TTAA	1 cut(s)	243
TscAI	CASTG	1 cut(s)	241
TspDTI	ATGAA	3 cut(s)	42, 176, 459
TspRI	CASTG	1 cut(s)	241

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.