Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0003294

Physical Location & Seq

Genomic Coordinates Forward (+)

56528284 .. 56529779

Gene Structure 1496 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG369500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGCTTCTTCTACTTTCAGCGGCGACGAGACCGCTCCCTTCTTCGGCTTCCTCGGCGCCGCCGCAGCTCTCGTCTTCTCCTGCATGGGCGCGGCGTACGGGACCGCCAAGAGTGGCGTGGGCGTGGCCTCCATGGGAGTGATGCGGCCGGAGCTGGTCATGAAATCGATCGTTCCGGTGGTCATGGCTGGAGTGCTTGGGATCTACGGGCTCATCATAGCTGTGATTATCAGCACCGGGATCAACCCAAAGGCCAAATCTTATTACCTGTTTGATGGATATGCTCACTTGTCCTCTGGCCTTGCTTGTGGCCTCGCTGGGCTTTCCGCCGGAATGGCTATCGGGATCGTCGGTGACGCCGGTGTCCGGGCTAATGCACAGCAGCCAAAGCTCTTTGTTGGCATGATCCTTATCCTCATCTTTGCTGAAGCTCTTGCTTTGTACGGTCTCATTGTTGGGATTATCCTCTCGTCCCGAGCAGGGCAATCTCGCGCAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000220 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006885 GO:0007035 GO:0008150 GO:0008324 GO:0009987 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015672 GO:0016020 GO:0016021 GO:0016462 GO:0016469 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019725 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030003 GO:0030004 GO:0030641 GO:0031090 GO:0031224 GO:0032991 GO:0033176 GO:0033177 GO:0033179 GO:0034220 GO:0036442 GO:0042592 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044769 GO:0045851 GO:0046961 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051452 GO:0051453 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098796 GO:0098805 GO:0099131 GO:0099132 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04142 ko04145 ko04721 ko04966 ko05110 ko05120 ko05152 ko05323 map00190 map01100 map04142 map04145 map04721 map04966 map05110 map05120 map05152 map05323

Pfam Domains

Protein Families

ATP-synt_C

Protein Analysis

166

Amino Acids

16.72

Weight (kDa)

8.62

Isoelectric Point (pI)

31.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP-synt_C	PF00137	18 - 77	3.9e-15	ATP synthase subunit C
ATP-synt_C	PF00137	98 - 156	3.1e-18	ATP synthase subunit C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003294)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75630 AT1G75630
fragaria_vesca	FvH4_2g27050
malus_domestica	MD02G1134600.v1.1 MD08G1017400.v1.1 MD08G1161900.v1.1 MD15G1016300.v1.1 MD15G1247900.v1.1 MD15G1347200.v1.1
prunus_persica	Prupe.1G370100_v2.0.a1 Prupe.1G370100_v2.0.a1 Prupe.1G494900_v2.0.a1 Prupe.7G166200_v2.0.a1 Prupe.8G083200_v2.0.a1
pyrus_communis	pycom02g10620 pycom08g01520 pycom15g01430 pycom15g21770 pycom15g31150
rosa_chinensis	RchiOBHm_Chr6g0295951 RchiOBHm_Chr6g0302211
rosa_laevigata	RLG00000011753
rosa_multiflora	Rmu_sc0000529.1_g000004 Rmu_sc0003633.1_g000001
rosa_roxburghii	Rroxscaffold_7G00165990
rosa_rugosa	Rorug06G0255300 Rorug06G0313100
rosa_samantha	Rh6AG369000 Rh6BG376800 Rh6BG476700 Rh6CG382900 Rh6CG438500 Rh6DG369500 Rh6DG425500
rosa_wichuraiana	Rw6G032180 Rw6G036870

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	362
AccB1I	GGYRCC	1 cut(s)	56
AccBSI	CCGCTC	1 cut(s)	35
AccII	CGCG	2 cut(s)	92, 492
AciI	CCGC	8 cut(s)	21, 33, 60, 63, 92, 105, 145, 327
AclWI	GGATC	4 cut(s)	209, 248, 353, 400
AcoI	YGGCCR	1 cut(s)	146
AcuI	CTGAAG	1 cut(s)	447
AcyI	GRCGYC	2 cut(s)	57, 357
AfaI	GTAC	2 cut(s)	98, 443
AfiI	CCNNNNNNNGG	3 cut(s)	44, 366, 480
AluBI	AGCT	5 cut(s)	68, 154, 221, 391, 431
AluI	AGCT	5 cut(s)	68, 154, 221, 391, 431
Alw26I	GTCTC	2 cut(s)	23, 452
AlwI	GGATC	4 cut(s)	209, 248, 353, 400
Ama87I	CYCGRG	1 cut(s)	474
AoxI	GGCC	5 cut(s)	126, 146, 252, 298, 310
ApeKI	GCWGC	2 cut(s)	65, 382
AspLEI	GCGC	3 cut(s)	59, 92, 494
AspS9I	GGNCC	1 cut(s)	102
AsuC2I	CCSGG	2 cut(s)	238, 368
AsuHPI	GGTGA	1 cut(s)	365
AvaI	CYCGRG	1 cut(s)	474
AvaII	GGWCC	1 cut(s)	102
BanI	GGYRCC	1 cut(s)	56
BanII	GRGCYC	1 cut(s)	213
BbsI	GAAGAC	1 cut(s)	67
BbvI	GCAGC	2 cut(s)	77, 394
BccI	CCATC	1 cut(s)	269
BcnI	CCSGG	2 cut(s)	238, 368
BcoDI	GTCTC	2 cut(s)	23, 452
BfoI	RGCGCY	1 cut(s)	60
BglI	GCCNNNNNGGC	1 cut(s)	335
BisI	GCNGC	7 cut(s)	22, 60, 63, 66, 93, 146, 383
BlsI	GCNGC	7 cut(s)	23, 61, 64, 67, 94, 147, 384
Bme1390I	CCNGG	2 cut(s)	238, 368
Bme18I	GGWCC	1 cut(s)	102
BmeT110I	CYCGRG	1 cut(s)	474
BmgT120I	GGNCC	1 cut(s)	102
BmiI	GGNNCC	2 cut(s)	58, 103
BmrFI	CCNGG	2 cut(s)	238, 368
BmsI	GCATC	1 cut(s)	132
BpiI	GAAGAC	1 cut(s)	67
BpmI	CTGGAG	1 cut(s)	210
BpuMI	CCSGG	2 cut(s)	238, 368
Bsa29I	ATCGAT	1 cut(s)	167
BsaBI	GATNNNNATC	1 cut(s)	410
BsaHI	GRCGYC	2 cut(s)	57, 357
BsaI	GGTCTC	2 cut(s)	23, 452
BsaJI	CCNNGG	2 cut(s)	52, 132
BsaWI	WCCGGW	1 cut(s)	175
Bsc4I	CCNNNNNNNGG	3 cut(s)	44, 366, 480
Bse118I	RCCGGY	1 cut(s)	359
Bse8I	GATNNNNATC	1 cut(s)	410
BseCI	ATCGAT	1 cut(s)	167
BseDI	CCNNGG	2 cut(s)	52, 132
BseJI	GATNNNNATC	1 cut(s)	410
BseLI	CCNNNNNNNGG	3 cut(s)	44, 366, 480
BseX3I	CGGCCG	1 cut(s)	146
BseXI	GCAGC	2 cut(s)	77, 394
BseYI	CCCAGC	1 cut(s)	317
Bsh1236I	CGCG	2 cut(s)	92, 492
Bsh1285I	CGRYCG	2 cut(s)	149, 171
BshFI	GGCC	5 cut(s)	128, 148, 254, 300, 312
BshNI	GGYRCC	1 cut(s)	56
BshVI	ATCGAT	1 cut(s)	167
BsiEI	CGRYCG	2 cut(s)	149, 171
BsiHKCI	CYCGRG	1 cut(s)	474
BsiSI	CCGG	6 cut(s)	149, 176, 237, 330, 360, 367
BsiWI	CGTACG	1 cut(s)	96
BslFI	GGGAC	2 cut(s)	115, 457
BslI	CCNNNNNNNGG	3 cut(s)	44, 366, 480
BsmAI	GTCTC	2 cut(s)	23, 452
BsmFI	GGGAC	2 cut(s)	115, 457
BsnI	GGCC	5 cut(s)	128, 148, 254, 300, 312
Bso31I	GGTCTC	2 cut(s)	23, 452
BsoBI	CYCGRG	1 cut(s)	474
Bsp1286I	GDGCHC	1 cut(s)	213
Bsp143I	GATC	5 cut(s)	168, 201, 240, 345, 405
Bsp19I	CCATGG	1 cut(s)	132
BspACI	CCGC	8 cut(s)	21, 33, 60, 63, 92, 105, 145, 327
BspANI	GGCC	5 cut(s)	128, 148, 254, 300, 312
BspDI	ATCGAT	1 cut(s)	167
BspFNI	CGCG	2 cut(s)	92, 492
BspHI	TCATGA	1 cut(s)	159
BspLI	GGNNCC	2 cut(s)	58, 103
BspPI	GGATC	4 cut(s)	209, 248, 353, 400
BspT107I	GGYRCC	1 cut(s)	56
BspTNI	GGTCTC	2 cut(s)	23, 452
BsrBI	CCGCTC	1 cut(s)	35
BsrFI	RCCGGY	1 cut(s)	359
BssAI	RCCGGY	1 cut(s)	359
BssECI	CCNNGG	2 cut(s)	52, 132
BssMI	GATC	5 cut(s)	168, 201, 240, 345, 405
BssNI	GRCGYC	2 cut(s)	57, 357
BssT1I	CCWWGG	1 cut(s)	132
Bst4CI	ACNGT	1 cut(s)	446
BstACI	GRCGYC	2 cut(s)	57, 357
BstDSI	CCRYGG	1 cut(s)	132
BstFNI	CGCG	2 cut(s)	92, 492
BstH2I	RGCGCY	1 cut(s)	60
BstHHI	GCGC	3 cut(s)	59, 92, 494
BstKTI	GATC	5 cut(s)	171, 204, 243, 348, 408
BstMAI	GTCTC	2 cut(s)	23, 452
BstMBI	GATC	5 cut(s)	168, 201, 240, 345, 405
BstMCI	CGRYCG	2 cut(s)	149, 171
BstMWI	GCNNNNNNNGC	5 cut(s)	54, 65, 151, 335, 388
BstSCI	CCNGG	2 cut(s)	236, 366
BstUI	CGCG	2 cut(s)	92, 492
BstV1I	GCAGC	2 cut(s)	77, 394
BstV2I	GAAGAC	1 cut(s)	67
BstX2I	RGATCY	1 cut(s)	201
BstYI	RGATCY	1 cut(s)	201
BstZI	CGGCCG	1 cut(s)	146
Bsu15I	ATCGAT	1 cut(s)	167
BsuRI	GGCC	5 cut(s)	128, 148, 254, 300, 312
BsuTUI	ATCGAT	1 cut(s)	167
BtgI	CCRYGG	1 cut(s)	132
CciI	TCATGA	1 cut(s)	159
CfoI	GCGC	3 cut(s)	59, 92, 494
Cfr10I	RCCGGY	1 cut(s)	359
Cfr13I	GGNCC	1 cut(s)	102
ClaI	ATCGAT	1 cut(s)	167
CseI	GACGC	1 cut(s)	365
Csp6I	GTAC	2 cut(s)	97, 442
CviAII	CATG	5 cut(s)	85, 133, 160, 184, 403
CviQI	GTAC	2 cut(s)	97, 442
DinI	GGCGCC	1 cut(s)	58
DpnI	GATC	5 cut(s)	170, 203, 242, 347, 407
DpnII	GATC	5 cut(s)	168, 201, 240, 345, 405
DrdI	GACNNNNNNGTC	1 cut(s)	362
DseDI	GACNNNNNNGTC	1 cut(s)	362
EaeI	YGGCCR	1 cut(s)	146
EagI	CGGCCG	1 cut(s)	146
EciI	GGCGGA	1 cut(s)	316
EclXI	CGGCCG	1 cut(s)	146
Eco130I	CCWWGG	1 cut(s)	132
Eco24I	GRGCYC	1 cut(s)	213
Eco31I	GGTCTC	2 cut(s)	23, 452
Eco47I	GGWCC	1 cut(s)	102
Eco52I	CGGCCG	1 cut(s)	146
Eco57I	CTGAAG	1 cut(s)	447
Eco88I	CYCGRG	1 cut(s)	474
EcoT14I	CCWWGG	1 cut(s)	132
EcoT38I	GRGCYC	1 cut(s)	213
EgeI	GGCGCC	1 cut(s)	58
EheI	GGCGCC	1 cut(s)	58
ErhI	CCWWGG	1 cut(s)	132
FaeI	CATG	5 cut(s)	88, 136, 163, 187, 406
FaiI	YATR	7 cut(s)	86, 134, 161, 185, 218, 282, 404
FaqI	GGGAC	2 cut(s)	115, 457
FatI	CATG	5 cut(s)	84, 132, 159, 183, 402
Fnu4HI	GCNGC	7 cut(s)	22, 60, 63, 66, 93, 146, 383
FriOI	GRGCYC	1 cut(s)	213
Fsp4HI	GCNGC	7 cut(s)	22, 60, 63, 66, 93, 146, 383
GlaI	GCGC	3 cut(s)	58, 91, 493
GluI	GCNGC	7 cut(s)	22, 60, 63, 66, 93, 146, 383
GsaI	CCCAGC	1 cut(s)	321
GsuI	CTGGAG	1 cut(s)	210
HaeII	RGCGCY	1 cut(s)	60
HaeIII	GGCC	5 cut(s)	128, 148, 254, 300, 312
HapII	CCGG	6 cut(s)	149, 176, 237, 330, 360, 367
HgaI	GACGC	1 cut(s)	365
HhaI	GCGC	3 cut(s)	59, 92, 494
Hin1I	GRCGYC	2 cut(s)	57, 357
Hin1II	CATG	5 cut(s)	88, 136, 163, 187, 406
Hin6I	GCGC	3 cut(s)	57, 90, 492
HinP1I	GCGC	3 cut(s)	57, 90, 492
HpaII	CCGG	6 cut(s)	149, 176, 237, 330, 360, 367
HphI	GGTGA	1 cut(s)	365
Hpy188III	TCNNGA	3 cut(s)	160, 343, 474
Hpy99I	CGWCG	2 cut(s)	29, 353
HpyAV	CCTTC	1 cut(s)	49
HpyCH4III	ACNGT	1 cut(s)	446
HpyCH4V	TGCA	2 cut(s)	84, 377
HpyF10VI	GCNNNNNNNGC	5 cut(s)	54, 65, 151, 335, 388
Hsp92I	GRCGYC	2 cut(s)	57, 357
Hsp92II	CATG	5 cut(s)	88, 136, 163, 187, 406
HspAI	GCGC	3 cut(s)	57, 90, 492
KasI	GGCGCC	1 cut(s)	56
Kzo9I	GATC	5 cut(s)	168, 201, 240, 345, 405
LmnI	GCTCC	2 cut(s)	40, 151
Lsp1109I	GCAGC	2 cut(s)	77, 394
LweI	GCATC	1 cut(s)	132
MaeIII	GTNAC	1 cut(s)	353
MalI	GATC	5 cut(s)	170, 203, 242, 347, 407
MbiI	CCGCTC	1 cut(s)	35
MboI	GATC	5 cut(s)	168, 201, 240, 345, 405
MboII	GAAGA	2 cut(s)	34, 67
MflI	RGATCY	1 cut(s)	201
MhlI	GDGCHC	1 cut(s)	213
Mly113I	GGCGCC	1 cut(s)	57
MnlI	CCTC	6 cut(s)	62, 139, 304, 323, 425, 476
MslI	CAYNNNNRTG	2 cut(s)	137, 221
MspA1I	CMGCKG	1 cut(s)	21
MspI	CCGG	6 cut(s)	149, 176, 237, 330, 360, 367
MspR9I	CCNGG	2 cut(s)	238, 368
MvnI	CGCG	2 cut(s)	92, 492
MwoI	GCNNNNNNNGC	5 cut(s)	54, 65, 151, 335, 388
NarI	GGCGCC	1 cut(s)	57
NciI	CCSGG	2 cut(s)	238, 368
NcoI	CCATGG	1 cut(s)	132
NdeII	GATC	5 cut(s)	168, 201, 240, 345, 405
NlaIII	CATG	5 cut(s)	88, 136, 163, 187, 406
NlaIV	GGNNCC	2 cut(s)	58, 103
NmeAIII	GCCGAG	1 cut(s)	33
NmuCI	GTSAC	1 cut(s)	353
PagI	TCATGA	1 cut(s)	159
Pfl23II	CGTACG	1 cut(s)	96
PkrI	GCNGC	7 cut(s)	23, 61, 64, 67, 94, 147, 384
Ple19I	CGATCG	1 cut(s)	171
PluTI	GGCGCC	1 cut(s)	60
PspFI	CCCAGC	1 cut(s)	317
PspLI	CGTACG	1 cut(s)	96
PspN4I	GGNNCC	2 cut(s)	58, 103
PspPI	GGNCC	1 cut(s)	102
PsuI	RGATCY	1 cut(s)	201
PvuI	CGATCG	1 cut(s)	171
RsaI	GTAC	2 cut(s)	98, 443
RsaNI	GTAC	2 cut(s)	97, 442
RseI	CAYNNNNRTG	2 cut(s)	137, 221
SatI	GCNGC	7 cut(s)	22, 60, 63, 66, 93, 146, 383
Sau3AI	GATC	5 cut(s)	168, 201, 240, 345, 405
Sau96I	GGNCC	1 cut(s)	102
ScrFI	CCNGG	2 cut(s)	238, 368
SduI	GDGCHC	1 cut(s)	213
SetI	ASST	6 cut(s)	70, 156, 223, 270, 393, 433
SfaNI	GCATC	1 cut(s)	132
SfoI	GGCGCC	1 cut(s)	58
SgrAI	CRCCGGYG	1 cut(s)	359
SinI	GGWCC	1 cut(s)	102
SmiMI	CAYNNNNRTG	2 cut(s)	137, 221
SsiI	CCGC	8 cut(s)	21, 33, 60, 63, 92, 105, 145, 327
SspDI	GGCGCC	1 cut(s)	56
StyD4I	CCNGG	2 cut(s)	236, 366
StyI	CCWWGG	1 cut(s)	132
TaaI	ACNGT	1 cut(s)	446
TaqI	TCGA	1 cut(s)	167
TauI	GCSGC	5 cut(s)	24, 62, 65, 95, 148
TseFI	GTSAC	1 cut(s)	353
TseI	GCWGC	2 cut(s)	65, 382
Tsp45I	GTSAC	1 cut(s)	353
TspDTI	ATGAA	1 cut(s)	176
VpaK11BI	GGWCC	1 cut(s)	102
XcmI	CCANNNNNNNNNTGG	1 cut(s)	115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.