Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003294

Physical Location & Seq

Genomic Coordinates Reverse (-)

41099293 .. 41101299

Gene Structure 2007 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G494900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGCTTCTTCTACCTTCAGCGGCGACGAAACCGCTCCTTTCTTCGGCTTCCTCGGAGCCGCCGCAGCTCTCGTCTTCTCCTGCATGGGTGCGGCTTACGGCACAGCAAAGAGTGGGGTGGGTGTGGCCTCCATGGGAGTGATGCGGCCTGAGCTGGTGATGAAATCGATCGTGCCGGTGGTTATGGCTGGAGTGCTTGGGATCTATGGGCTCATCATAGCTGTTATTATTAGCACCGGGATTAACCCAAAGGCCAAATCTTATTACCTCTTTGATGGGTACGCGCACTTGTCCTCTGGCCTTGCTTGTGGTCTCGCCGGACTGTCCGCCGGAATGGCCATTGGGATAGTCGGTGACGCCGGTGTCCGGGCTAATGCACAGCAGCCAAAGCTCTTCGTTGGTATGATTCTTATCCTTATCTTCGCCGAAGCTCTTGCCTTGTATGGCCTCATTGTGGGGATCATCCTCTCATCCCGATCAGGGCAATCTCGCGCAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000220 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006885 GO:0007035 GO:0008150 GO:0008324 GO:0009987 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015672 GO:0016020 GO:0016021 GO:0016462 GO:0016469 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019725 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030003 GO:0030004 GO:0030641 GO:0031090 GO:0031224 GO:0032991 GO:0033176 GO:0033177 GO:0033179 GO:0034220 GO:0036442 GO:0042592 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044769 GO:0045851 GO:0046961 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051452 GO:0051453 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098796 GO:0098805 GO:0099131 GO:0099132 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04142 ko04145 ko04721 ko04966 ko05110 ko05120 ko05152 ko05323 map00190 map01100 map04142 map04145 map04721 map04966 map05110 map05120 map05152 map05323

Pfam Domains

Protein Families

ATP-synt_C

Protein Analysis

167

Amino Acids

16.73

Weight (kDa)

8.62

Isoelectric Point (pI)

34.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003294)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75630 AT1G75630
fragaria_vesca	FvH4_2g27050
malus_domestica	MD02G1134600.v1.1 MD08G1017400.v1.1 MD08G1161900.v1.1 MD15G1016300.v1.1 MD15G1247900.v1.1 MD15G1347200.v1.1
prunus_persica	Prupe.1G370100_v2.0.a1 Prupe.1G370100_v2.0.a1 Prupe.1G494900_v2.0.a1 Prupe.7G166200_v2.0.a1 Prupe.8G083200_v2.0.a1
pyrus_communis	pycom02g10620 pycom08g01520 pycom15g01430 pycom15g21770 pycom15g31150
rosa_chinensis	RchiOBHm_Chr6g0295951 RchiOBHm_Chr6g0302211
rosa_laevigata	RLG00000011753
rosa_multiflora	Rmu_sc0000529.1_g000004 Rmu_sc0003633.1_g000001
rosa_roxburghii	Rroxscaffold_7G00165990
rosa_rugosa	Rorug06G0255300 Rorug06G0313100
rosa_samantha	Rh6AG369000 Rh6BG376800 Rh6BG476700 Rh6CG382900 Rh6CG438500 Rh6DG369500 Rh6DG425500
rosa_wichuraiana	Rw6G032180 Rw6G036870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	362
AccBSI	CCGCTC	1 cut(s)	35
AccII	CGCG	2 cut(s)	284, 492
AciI	CCGC	7 cut(s)	21, 33, 60, 63, 92, 145, 327
AclWI	GGATC	2 cut(s)	209, 467
AcoI	YGGCCR	1 cut(s)	336
AcyI	GRCGYC	1 cut(s)	357
AfaI	GTAC	1 cut(s)	281
AfiI	CCNNNNNNNGG	4 cut(s)	44, 366, 454, 480
AluBI	AGCT	5 cut(s)	68, 154, 221, 391, 431
AluI	AGCT	5 cut(s)	68, 154, 221, 391, 431
Alw26I	GTCTC	1 cut(s)	317
AlwI	GGATC	2 cut(s)	209, 467
AoxI	GGCC	6 cut(s)	126, 146, 252, 298, 336, 445
ApeKI	GCWGC	2 cut(s)	65, 382
AspLEI	GCGC	2 cut(s)	286, 494
AsuC2I	CCSGG	2 cut(s)	238, 368
AsuHPI	GGTGA	2 cut(s)	169, 365
BalI	TGGCCA	1 cut(s)	338
BanII	GRGCYC	1 cut(s)	213
BbsI	GAAGAC	1 cut(s)	67
BbvI	GCAGC	2 cut(s)	77, 394
BccI	CCATC	1 cut(s)	269
BceAI	ACGGC	1 cut(s)	115
BcgI	CGANNNNNNTGC	2 cut(s)	416, 450
BcnI	CCSGG	2 cut(s)	238, 368
BcoDI	GTCTC	1 cut(s)	317
BglI	GCCNNNNNGGC	1 cut(s)	335
BisI	GCNGC	7 cut(s)	22, 60, 63, 66, 93, 146, 383
BlsI	GCNGC	7 cut(s)	23, 61, 64, 67, 94, 147, 384
Bme1390I	CCNGG	2 cut(s)	238, 368
BmiI	GGNNCC	1 cut(s)	58
BmrFI	CCNGG	2 cut(s)	238, 368
BmsI	GCATC	1 cut(s)	132
BpiI	GAAGAC	1 cut(s)	67
BpmI	CTGGAG	1 cut(s)	210
Bpu10I	CCTNAGC	1 cut(s)	150
BpuMI	CCSGG	2 cut(s)	238, 368
Bsa29I	ATCGAT	1 cut(s)	167
BsaBI	GATNNNNATC	1 cut(s)	410
BsaHI	GRCGYC	1 cut(s)	357
BsaI	GGTCTC	1 cut(s)	317
BsaJI	CCNNGG	2 cut(s)	52, 132
Bsc4I	CCNNNNNNNGG	4 cut(s)	44, 366, 454, 480
Bse118I	RCCGGY	2 cut(s)	175, 359
Bse8I	GATNNNNATC	1 cut(s)	410
BseCI	ATCGAT	1 cut(s)	167
BseDI	CCNNGG	2 cut(s)	52, 132
BseGI	GGATG	2 cut(s)	462, 470
BseJI	GATNNNNATC	1 cut(s)	410
BseLI	CCNNNNNNNGG	4 cut(s)	44, 366, 454, 480
BseMII	CTCAG	1 cut(s)	141
BseXI	GCAGC	2 cut(s)	77, 394
Bsh1236I	CGCG	2 cut(s)	284, 492
Bsh1285I	CGRYCG	1 cut(s)	171
BshFI	GGCC	6 cut(s)	128, 148, 254, 300, 338, 447
BshVI	ATCGAT	1 cut(s)	167
BsiEI	CGRYCG	1 cut(s)	171
BsiSI	CCGG	6 cut(s)	176, 237, 318, 330, 360, 367
BslI	CCNNNNNNNGG	4 cut(s)	44, 366, 454, 480
BsmAI	GTCTC	1 cut(s)	317
BsnI	GGCC	6 cut(s)	128, 148, 254, 300, 338, 447
Bso31I	GGTCTC	1 cut(s)	317
Bsp1286I	GDGCHC	1 cut(s)	213
Bsp143I	GATC	4 cut(s)	168, 201, 459, 476
Bsp19I	CCATGG	1 cut(s)	132
BspACI	CCGC	7 cut(s)	21, 33, 60, 63, 92, 145, 327
BspANI	GGCC	6 cut(s)	128, 148, 254, 300, 338, 447
BspCNI	CTCAG	1 cut(s)	142
BspDI	ATCGAT	1 cut(s)	167
BspFNI	CGCG	2 cut(s)	284, 492
BspLI	GGNNCC	1 cut(s)	58
BspPI	GGATC	2 cut(s)	209, 467
BspQI	GCTCTTC	1 cut(s)	398
BspTNI	GGTCTC	1 cut(s)	317
BsrBI	CCGCTC	1 cut(s)	35
BsrFI	RCCGGY	2 cut(s)	175, 359
BssAI	RCCGGY	2 cut(s)	175, 359
BssECI	CCNNGG	2 cut(s)	52, 132
BssMI	GATC	4 cut(s)	168, 201, 459, 476
BssNI	GRCGYC	1 cut(s)	357
BssT1I	CCWWGG	1 cut(s)	132
Bst4CI	ACNGT	1 cut(s)	324
Bst6I	CTCTTC	1 cut(s)	398
BstACI	GRCGYC	1 cut(s)	357
BstDEI	CTNAG	1 cut(s)	150
BstDSI	CCRYGG	1 cut(s)	132
BstF5I	GGATG	2 cut(s)	462, 470
BstFNI	CGCG	2 cut(s)	284, 492
BstHHI	GCGC	2 cut(s)	286, 494
BstKTI	GATC	4 cut(s)	171, 204, 462, 479
BstMAI	GTCTC	1 cut(s)	317
BstMBI	GATC	4 cut(s)	168, 201, 459, 476
BstMCI	CGRYCG	1 cut(s)	171
BstMWI	GCNNNNNNNGC	4 cut(s)	65, 151, 335, 388
BstSCI	CCNGG	2 cut(s)	236, 366
BstUI	CGCG	2 cut(s)	284, 492
BstV1I	GCAGC	2 cut(s)	77, 394
BstV2I	GAAGAC	1 cut(s)	67
BstX2I	RGATCY	1 cut(s)	201
BstYI	RGATCY	1 cut(s)	201
Bsu15I	ATCGAT	1 cut(s)	167
BsuRI	GGCC	6 cut(s)	128, 148, 254, 300, 338, 447
BsuTUI	ATCGAT	1 cut(s)	167
BtgI	CCRYGG	1 cut(s)	132
BtsCI	GGATG	2 cut(s)	462, 470
CfoI	GCGC	2 cut(s)	286, 494
Cfr10I	RCCGGY	2 cut(s)	175, 359
ClaI	ATCGAT	1 cut(s)	167
CseI	GACGC	1 cut(s)	365
Csp6I	GTAC	1 cut(s)	280
CviAII	CATG	2 cut(s)	85, 133
CviQI	GTAC	1 cut(s)	280
DdeI	CTNAG	1 cut(s)	150
DpnI	GATC	4 cut(s)	170, 203, 461, 478
DpnII	GATC	4 cut(s)	168, 201, 459, 476
DrdI	GACNNNNNNGTC	1 cut(s)	362
DseDI	GACNNNNNNGTC	1 cut(s)	362
EaeI	YGGCCR	1 cut(s)	336
Eam1104I	CTCTTC	1 cut(s)	398
EarI	CTCTTC	1 cut(s)	398
EciI	GGCGGA	1 cut(s)	316
Eco130I	CCWWGG	1 cut(s)	132
Eco24I	GRGCYC	1 cut(s)	213
Eco31I	GGTCTC	1 cut(s)	317
EcoT14I	CCWWGG	1 cut(s)	132
EcoT38I	GRGCYC	1 cut(s)	213
ErhI	CCWWGG	1 cut(s)	132
FaeI	CATG	2 cut(s)	88, 136
FaiI	YATR	7 cut(s)	86, 134, 185, 207, 218, 404, 444
FatI	CATG	2 cut(s)	84, 132
Fnu4HI	GCNGC	7 cut(s)	22, 60, 63, 66, 93, 146, 383
FokI	GGATG	2 cut(s)	449, 457
FriOI	GRGCYC	1 cut(s)	213
Fsp4HI	GCNGC	7 cut(s)	22, 60, 63, 66, 93, 146, 383
GlaI	GCGC	2 cut(s)	285, 493
GluI	GCNGC	7 cut(s)	22, 60, 63, 66, 93, 146, 383
GsuI	CTGGAG	1 cut(s)	210
HaeIII	GGCC	6 cut(s)	128, 148, 254, 300, 338, 447
HapII	CCGG	6 cut(s)	176, 237, 318, 330, 360, 367
HgaI	GACGC	1 cut(s)	365
HhaI	GCGC	2 cut(s)	286, 494
Hin1I	GRCGYC	1 cut(s)	357
Hin1II	CATG	2 cut(s)	88, 136
Hin6I	GCGC	2 cut(s)	284, 492
HinP1I	GCGC	2 cut(s)	284, 492
HinfI	GANTC	1 cut(s)	406
HpaII	CCGG	6 cut(s)	176, 237, 318, 330, 360, 367
HphI	GGTGA	2 cut(s)	169, 365
Hpy188I	TCNGA	1 cut(s)	56
Hpy188III	TCNNGA	1 cut(s)	474
Hpy99I	CGWCG	1 cut(s)	29
HpyAV	CCTTC	1 cut(s)	25
HpyCH4III	ACNGT	1 cut(s)	324
HpyCH4V	TGCA	2 cut(s)	84, 377
HpyF10VI	GCNNNNNNNGC	4 cut(s)	65, 151, 335, 388
HpyF3I	CTNAG	1 cut(s)	150
Hsp92I	GRCGYC	1 cut(s)	357
Hsp92II	CATG	2 cut(s)	88, 136
HspAI	GCGC	2 cut(s)	284, 492
Kzo9I	GATC	4 cut(s)	168, 201, 459, 476
LguI	GCTCTTC	1 cut(s)	398
LmnI	GCTCC	2 cut(s)	40, 56
Lsp1109I	GCAGC	2 cut(s)	77, 394
LweI	GCATC	1 cut(s)	132
MaeIII	GTNAC	1 cut(s)	353
MalI	GATC	4 cut(s)	170, 203, 461, 478
MbiI	CCGCTC	1 cut(s)	35
MboI	GATC	4 cut(s)	168, 201, 459, 476
MboII	GAAGA	4 cut(s)	34, 67, 385, 412
MflI	RGATCY	1 cut(s)	201
MhlI	GDGCHC	1 cut(s)	213
MlsI	TGGCCA	1 cut(s)	338
MluNI	TGGCCA	1 cut(s)	338
MnlI	CCTC	6 cut(s)	62, 139, 278, 304, 458, 476
Mox20I	TGGCCA	1 cut(s)	338
MscI	TGGCCA	1 cut(s)	338
MseI	TTAA	2 cut(s)	243, 499
MslI	CAYNNNNRTG	1 cut(s)	137
Msp20I	TGGCCA	1 cut(s)	338
MspA1I	CMGCKG	1 cut(s)	21
MspI	CCGG	6 cut(s)	176, 237, 318, 330, 360, 367
MspR9I	CCNGG	2 cut(s)	238, 368
MvnI	CGCG	2 cut(s)	284, 492
MwoI	GCNNNNNNNGC	4 cut(s)	65, 151, 335, 388
NciI	CCSGG	2 cut(s)	238, 368
NcoI	CCATGG	1 cut(s)	132
NdeII	GATC	4 cut(s)	168, 201, 459, 476
NlaIII	CATG	2 cut(s)	88, 136
NlaIV	GGNNCC	1 cut(s)	58
NmuCI	GTSAC	1 cut(s)	353
PciSI	GCTCTTC	1 cut(s)	398
PfeI	GAWTC	1 cut(s)	406
PkrI	GCNGC	7 cut(s)	23, 61, 64, 67, 94, 147, 384
Ple19I	CGATCG	1 cut(s)	171
PspN4I	GGNNCC	1 cut(s)	58
PsuI	RGATCY	1 cut(s)	201
PvuI	CGATCG	1 cut(s)	171
RsaI	GTAC	1 cut(s)	281
RsaNI	GTAC	1 cut(s)	280
RseI	CAYNNNNRTG	1 cut(s)	137
SapI	GCTCTTC	1 cut(s)	398
SaqAI	TTAA	2 cut(s)	243, 499
SatI	GCNGC	7 cut(s)	22, 60, 63, 66, 93, 146, 383
Sau3AI	GATC	4 cut(s)	168, 201, 459, 476
ScrFI	CCNGG	2 cut(s)	238, 368
SduI	GDGCHC	1 cut(s)	213
SetI	ASST	7 cut(s)	17, 70, 156, 223, 270, 393, 433
SfaNI	GCATC	1 cut(s)	132
SgrAI	CRCCGGYG	1 cut(s)	359
SmiMI	CAYNNNNRTG	1 cut(s)	137
SsiI	CCGC	7 cut(s)	21, 33, 60, 63, 92, 145, 327
StyD4I	CCNGG	2 cut(s)	236, 366
StyI	CCWWGG	1 cut(s)	132
TaaI	ACNGT	1 cut(s)	324
TaqI	TCGA	1 cut(s)	167
TauI	GCSGC	5 cut(s)	24, 62, 65, 95, 148
TfiI	GAWTC	1 cut(s)	406
Tru1I	TTAA	2 cut(s)	243, 499
Tru9I	TTAA	2 cut(s)	243, 499
TseFI	GTSAC	1 cut(s)	353
TseI	GCWGC	2 cut(s)	65, 382
Tsp45I	GTSAC	1 cut(s)	353
TspDTI	ATGAA	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.