Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0003294

Physical Location & Seq

Genomic Coordinates Forward (+)

15835427 .. 15836830

Gene Structure 1404 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g21770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGCTCAGTCCACAGACGACTCAGAAATTTTACAAGAAGCAAGTGGCACCACACCGTCGCACTTTACAAGCGACAAAAGTCGCGTGTGTGAATCCAAATCTCTGTGTCTCCATTCTCCGCGATCAGAATTTCCCAAATCTGAGAAACTTCACCCAATCGCTAATCGGAACACCCAAAAGATGGCGTCATCCACCTTCAGCGGCGACGAAACGGCACCGTTCTTCGGCTTTCTTGGCGCGGCGGCCGCCCTCGTCTTTTCCTGCATGGGAGCGGCGTACGGGACGGCGAAGAGTGGCGTGGGAGTGGCGTCGATGGGGGTGATGAGGCCGGAGCTGGTGATGAAGTCGATTGTTCCGGTTGTTATGGCGGGAGTGTTGGGTATCTACGGTTTGATCATTGCTGTGATTATCAGCACTGGGATTAACCCAAAGGCCAAATCTTACTACCTCTTCGATGGGTACGCCCACCTCTCCTCCGGTCTCGCTTGTGGACTCGCCGGACTTTCCGCCGGAATGGCCATCGGCATCGTCGGCGATGCCGGTGTTAGGGCAAACGCACAACAGCCCAAGCTTTTTGTTGGGATGATTCTCATTCTCATCTTTGCTGAAGCTTTGGCTTTGTACGGTCTTATTGTCGGTATCATCCTTTCATCCCGATCTGGACAGTCCAGAGCAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000220 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006885 GO:0007035 GO:0008150 GO:0008324 GO:0009987 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015672 GO:0016020 GO:0016021 GO:0016462 GO:0016469 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019725 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030003 GO:0030004 GO:0030641 GO:0031090 GO:0031224 GO:0032991 GO:0033176 GO:0033177 GO:0033179 GO:0034220 GO:0036442 GO:0042592 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044769 GO:0045851 GO:0046961 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051452 GO:0051453 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098796 GO:0098805 GO:0099131 GO:0099132 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04142 ko04145 ko04721 ko04966 ko05110 ko05120 ko05152 ko05323 map00190 map01100 map04142 map04145 map04721 map04966 map05110 map05120 map05152 map05323

Pfam Domains

Protein Families

ATP-synt_C

Protein Analysis

227

Amino Acids

23.39

Weight (kDa)

8.34

Isoelectric Point (pI)

45.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP-synt_C	PF00137	78 - 137	7.3e-15	ATP synthase subunit C
ATP-synt_C	PF00137	158 - 216	5.7e-18	ATP synthase subunit C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003294)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75630 AT1G75630
fragaria_vesca	FvH4_2g27050
malus_domestica	MD02G1134600.v1.1 MD08G1017400.v1.1 MD08G1161900.v1.1 MD15G1016300.v1.1 MD15G1247900.v1.1 MD15G1347200.v1.1
prunus_persica	Prupe.1G370100_v2.0.a1 Prupe.1G370100_v2.0.a1 Prupe.1G494900_v2.0.a1 Prupe.7G166200_v2.0.a1 Prupe.8G083200_v2.0.a1
pyrus_communis	pycom02g10620 pycom08g01520 pycom15g01430 pycom15g21770 pycom15g31150
rosa_chinensis	RchiOBHm_Chr6g0295951 RchiOBHm_Chr6g0302211
rosa_laevigata	RLG00000011753
rosa_multiflora	Rmu_sc0000529.1_g000004 Rmu_sc0003633.1_g000001
rosa_roxburghii	Rroxscaffold_7G00165990
rosa_rugosa	Rorug06G0255300 Rorug06G0313100
rosa_samantha	Rh6AG369000 Rh6BG376800 Rh6BG476700 Rh6CG382900 Rh6CG438500 Rh6DG369500 Rh6DG425500
rosa_wichuraiana	Rw6G032180 Rw6G036870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	47, 214
AccB7I	CCANNNNNTGG	1 cut(s)	181
AccBSI	CCGCTC	1 cut(s)	272
AccII	CGCG	3 cut(s)	84, 121, 239
AciI	CCGC	8 cut(s)	119, 201, 239, 242, 246, 272, 368, 507
AcoI	YGGCCR	2 cut(s)	243, 516
AcsI	RAATTY	2 cut(s)	27, 128
AcuI	CTGAAG	2 cut(s)	181, 627
AcyI	GRCGYC	2 cut(s)	185, 308
AfaI	GTAC	3 cut(s)	278, 461, 623
AfiI	CCNNNNNNNGG	3 cut(s)	181, 224, 546
AluBI	AGCT	3 cut(s)	334, 571, 611
AluI	AGCT	3 cut(s)	334, 571, 611
Alw26I	GTCTC	2 cut(s)	113, 485
AoxI	GGCC	4 cut(s)	243, 326, 432, 516
ApoI	RAATTY	2 cut(s)	27, 128
AspLEI	GCGC	1 cut(s)	239
AsuHPI	GGTGA	3 cut(s)	143, 331, 349
BalI	TGGCCA	1 cut(s)	518
BanI	GGYRCC	2 cut(s)	47, 214
BccI	CCATC	4 cut(s)	175, 307, 449, 527
BceAI	ACGGC	2 cut(s)	228, 300
BclI	TGATCA	1 cut(s)	393
BcoDI	GTCTC	2 cut(s)	113, 485
BglI	GCCNNNNNGGC	1 cut(s)	515
BisI	GCNGC	5 cut(s)	202, 240, 243, 246, 273
BlsI	GCNGC	5 cut(s)	203, 241, 244, 247, 274
BmiI	GGNNCC	2 cut(s)	49, 216
BmrI	ACTGGG	1 cut(s)	426
BmsI	GCATC	2 cut(s)	526, 534
BmuI	ACTGGG	1 cut(s)	426
BoxI	GACNNNNGTC	1 cut(s)	78
BsaHI	GRCGYC	2 cut(s)	185, 308
BsaI	GGTCTC	1 cut(s)	485
BsaWI	WCCGGW	2 cut(s)	355, 476
BsaXI	ACNNNNNCTCC	2 cut(s)	458, 488
Bsc4I	CCNNNNNNNGG	3 cut(s)	181, 224, 546
Bse118I	RCCGGY	1 cut(s)	539
Bse1I	ACTGG	1 cut(s)	421
Bse3DI	GCAATG	1 cut(s)	396
BseGI	GGATG	4 cut(s)	188, 588, 642, 650
BseLI	CCNNNNNNNGG	3 cut(s)	181, 224, 546
BseMI	GCAATG	1 cut(s)	396
BseMII	CTCAG	3 cut(s)	20, 36, 132
BseNI	ACTGG	1 cut(s)	421
BseRI	GAGGAG	1 cut(s)	463
BseX3I	CGGCCG	1 cut(s)	243
Bsh1236I	CGCG	3 cut(s)	84, 121, 239
Bsh1285I	CGRYCG	1 cut(s)	246
BshFI	GGCC	4 cut(s)	245, 328, 434, 518
BshNI	GGYRCC	2 cut(s)	47, 214
BsiEI	CGRYCG	1 cut(s)	246
BsiSI	CCGG	6 cut(s)	329, 356, 477, 498, 510, 540
BsiWI	CGTACG	1 cut(s)	276
BslFI	GGGAC	1 cut(s)	295
BslI	CCNNNNNNNGG	3 cut(s)	181, 224, 546
BsmAI	GTCTC	2 cut(s)	113, 485
BsmFI	GGGAC	1 cut(s)	295
BsnI	GGCC	4 cut(s)	245, 328, 434, 518
Bso31I	GGTCTC	1 cut(s)	485
Bsp143I	GATC	3 cut(s)	122, 393, 656
BspACI	CCGC	8 cut(s)	119, 201, 239, 242, 246, 272, 368, 507
BspANI	GGCC	4 cut(s)	245, 328, 434, 518
BspCNI	CTCAG	3 cut(s)	19, 35, 133
BspFNI	CGCG	3 cut(s)	84, 121, 239
BspLI	GGNNCC	2 cut(s)	49, 216
BspT107I	GGYRCC	2 cut(s)	47, 214
BspTNI	GGTCTC	1 cut(s)	485
BsrBI	CCGCTC	1 cut(s)	272
BsrDI	GCAATG	1 cut(s)	396
BsrFI	RCCGGY	1 cut(s)	539
BsrI	ACTGG	1 cut(s)	421
BssAI	RCCGGY	1 cut(s)	539
BssMI	GATC	3 cut(s)	122, 393, 656
BssNI	GRCGYC	2 cut(s)	185, 308
Bst4CI	ACNGT	5 cut(s)	57, 219, 389, 626, 666
Bst6I	CTCTTC	2 cut(s)	284, 455
BstACI	GRCGYC	2 cut(s)	185, 308
BstDEI	CTNAG	3 cut(s)	6, 22, 141
BstF5I	GGATG	4 cut(s)	188, 588, 642, 650
BstFNI	CGCG	3 cut(s)	84, 121, 239
BstHHI	GCGC	1 cut(s)	239
BstKTI	GATC	3 cut(s)	125, 396, 659
BstMAI	GTCTC	2 cut(s)	113, 485
BstMBI	GATC	3 cut(s)	122, 393, 656
BstMCI	CGRYCG	1 cut(s)	246
BstMWI	GCNNNNNNNGC	4 cut(s)	234, 245, 515, 531
BstPAI	GACNNNNGTC	1 cut(s)	78
BstUI	CGCG	3 cut(s)	84, 121, 239
BstZI	CGGCCG	1 cut(s)	243
BsuRI	GGCC	4 cut(s)	245, 328, 434, 518
BtgZI	GCGATG	1 cut(s)	549
BtsCI	GGATG	4 cut(s)	188, 588, 642, 650
BtsIMutI	CAGTG	1 cut(s)	414
CciNI	GCGGCCGC	1 cut(s)	243
CfoI	GCGC	1 cut(s)	239
Cfr10I	RCCGGY	1 cut(s)	539
CseI	GACGC	2 cut(s)	174, 297
Csp6I	GTAC	3 cut(s)	277, 460, 622
CviAII	CATG	1 cut(s)	265
CviQI	GTAC	3 cut(s)	277, 460, 622
DdeI	CTNAG	3 cut(s)	6, 22, 141
DpnI	GATC	3 cut(s)	124, 395, 658
DpnII	GATC	3 cut(s)	122, 393, 656
EaeI	YGGCCR	2 cut(s)	243, 516
EagI	CGGCCG	1 cut(s)	243
Eam1104I	CTCTTC	2 cut(s)	284, 455
EarI	CTCTTC	2 cut(s)	284, 455
EciI	GGCGGA	1 cut(s)	496
EclXI	CGGCCG	1 cut(s)	243
Eco31I	GGTCTC	1 cut(s)	485
Eco52I	CGGCCG	1 cut(s)	243
Eco57I	CTGAAG	2 cut(s)	181, 627
FaeI	CATG	1 cut(s)	268
FaiI	YATR	2 cut(s)	266, 365
FaqI	GGGAC	1 cut(s)	295
FatI	CATG	1 cut(s)	264
FauI	CCCGC	1 cut(s)	361
FbaI	TGATCA	1 cut(s)	393
Fnu4HI	GCNGC	5 cut(s)	202, 240, 243, 246, 273
FokI	GGATG	4 cut(s)	175, 595, 629, 637
Fsp4HI	GCNGC	5 cut(s)	202, 240, 243, 246, 273
GlaI	GCGC	1 cut(s)	238
GluI	GCNGC	5 cut(s)	202, 240, 243, 246, 273
HaeIII	GGCC	4 cut(s)	245, 328, 434, 518
HapII	CCGG	6 cut(s)	329, 356, 477, 498, 510, 540
HgaI	GACGC	2 cut(s)	174, 297
HhaI	GCGC	1 cut(s)	239
Hin1I	GRCGYC	2 cut(s)	185, 308
Hin1II	CATG	1 cut(s)	268
Hin6I	GCGC	1 cut(s)	237
HinP1I	GCGC	1 cut(s)	237
HindIII	AAGCTT	2 cut(s)	569, 609
HinfI	GANTC	4 cut(s)	20, 92, 492, 586
HpaII	CCGG	6 cut(s)	329, 356, 477, 498, 510, 540
HphI	GGTGA	3 cut(s)	143, 331, 349
Hpy166II	GTNNAC	2 cut(s)	12, 491
Hpy188I	TCNGA	4 cut(s)	25, 127, 142, 168
Hpy188III	TCNNGA	3 cut(s)	654, 660, 669
Hpy8I	GTNNAC	2 cut(s)	12, 491
Hpy99I	CGWCG	4 cut(s)	61, 209, 313, 533
HpyAV	CCTTC	1 cut(s)	205
HpyCH4III	ACNGT	5 cut(s)	57, 219, 389, 626, 666
HpyCH4V	TGCA	1 cut(s)	264
HpyF10VI	GCNNNNNNNGC	4 cut(s)	234, 245, 515, 531
HpyF3I	CTNAG	3 cut(s)	6, 22, 141
Hsp92I	GRCGYC	2 cut(s)	185, 308
Hsp92II	CATG	1 cut(s)	268
HspAI	GCGC	1 cut(s)	237
Ksp22I	TGATCA	1 cut(s)	393
Kzo9I	GATC	3 cut(s)	122, 393, 656
LmnI	GCTCC	2 cut(s)	269, 331
LweI	GCATC	2 cut(s)	526, 534
MalI	GATC	3 cut(s)	124, 395, 658
MbiI	CCGCTC	1 cut(s)	272
MboI	GATC	3 cut(s)	122, 393, 656
MboII	GAAGA	3 cut(s)	214, 301, 442
MlsI	TGGCCA	1 cut(s)	518
MluCI	AATT	2 cut(s)	27, 128
MluNI	TGGCCA	1 cut(s)	518
MlyI	GAGTC	2 cut(s)	14, 486
MnlI	CCTC	5 cut(s)	260, 318, 458, 479, 484
Mox20I	TGGCCA	1 cut(s)	518
MscI	TGGCCA	1 cut(s)	518
MseI	TTAA	1 cut(s)	423
MslI	CAYNNNNRTG	1 cut(s)	401
Msp20I	TGGCCA	1 cut(s)	518
MspA1I	CMGCKG	1 cut(s)	201
MspI	CCGG	6 cut(s)	329, 356, 477, 498, 510, 540
MvnI	CGCG	3 cut(s)	84, 121, 239
MwoI	GCNNNNNNNGC	4 cut(s)	234, 245, 515, 531
NdeII	GATC	3 cut(s)	122, 393, 656
NlaIII	CATG	1 cut(s)	268
NlaIV	GGNNCC	2 cut(s)	49, 216
NotI	GCGGCCGC	1 cut(s)	243
PfeI	GAWTC	2 cut(s)	92, 586
Pfl23II	CGTACG	1 cut(s)	276
PflMI	CCANNNNNTGG	1 cut(s)	181
PkrI	GCNGC	5 cut(s)	203, 241, 244, 247, 274
PleI	GAGTC	2 cut(s)	14, 486
PpsI	GAGTC	2 cut(s)	14, 486
PshAI	GACNNNNGTC	1 cut(s)	78
PspLI	CGTACG	1 cut(s)	276
PspN4I	GGNNCC	2 cut(s)	49, 216
RsaI	GTAC	3 cut(s)	278, 461, 623
RsaNI	GTAC	3 cut(s)	277, 460, 622
RseI	CAYNNNNRTG	1 cut(s)	401
SaqAI	TTAA	1 cut(s)	423
SatI	GCNGC	5 cut(s)	202, 240, 243, 246, 273
Sau3AI	GATC	3 cut(s)	122, 393, 656
SchI	GAGTC	2 cut(s)	14, 486
SetI	ASST	6 cut(s)	197, 336, 450, 471, 573, 613
SfaNI	GCATC	2 cut(s)	526, 534
SmiMI	CAYNNNNRTG	1 cut(s)	401
Sse9I	AATT	2 cut(s)	27, 128
SsiI	CCGC	8 cut(s)	119, 201, 239, 242, 246, 272, 368, 507
TaaI	ACNGT	5 cut(s)	57, 219, 389, 626, 666
TaqI	TCGA	3 cut(s)	311, 347, 453
TasI	AATT	2 cut(s)	27, 128
TauI	GCSGC	5 cut(s)	204, 242, 245, 248, 275
TfiI	GAWTC	2 cut(s)	92, 586
Tru1I	TTAA	1 cut(s)	423
Tru9I	TTAA	1 cut(s)	423
TscAI	CASTG	1 cut(s)	421
TspDTI	ATGAA	2 cut(s)	356, 639
TspRI	CASTG	1 cut(s)	421
Van91I	CCANNNNNTGG	1 cut(s)	181
XapI	RAATTY	2 cut(s)	27, 128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.