AT1G76420

Protein CUP-SHAPED COTYLEDON

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0013567
Physical Location & Seq
Reverse (-)
28671806 .. 28674045
2240 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G76420.1

Sequence Viewer

Length: 1005 bp
ATGATGCTTGCGGTGGAAGATGTGTTAAGCGAACTCGCCGGAGAAGAAAGGAACGAGAGAGGATTGCCACCTGGCTTCCGGTTTCACCCGACGGACGAAGAGCTCATTACCTTCTACTTAGCTTCCAAAATCTTCCATGGTGGTCTCTCCGGCATTCACATTTCCGAAGTTGATCTCAACCGCTGTGAACCTTGGGAGCTACCAGAAATGGCGAAGATGGGAGAGAGAGAGTGGTACTTTTATAGTCTAAGGGACAGGAAATATCCGACAGGTTTGAGGACTAACAGAGCAACTACTGCTGGATACTGGAAAGCTACCGGCAAAGATAAGGAAGTCTTCTCCGGCGGAGGAGGACAGCTTGTTGGGATGAAGAAGACGTTGGTGTTCTACAAAGGTAGGGCTCCACGTGGCCTCAAGACTAAGTGGGTCATGCATGAGTATCGCCTCGAAAACGACCATTCACACCGCCACACGTGTAAGGAGGAATGGGTGATTTGCAGAGTGTTCAATAAAACAGGAGACAGAAAAAATGTTGGATTAATCCATAACCAAATCAGCTACCTTCATAACCATTCACTCTCAACAACACATCATCATCATCATGAAGCCTTACCTTTGCTTATAGAACCTTCCAACAAAACCCTAACCAACTTCCCATCACTACTCTACGATGATCCACACCAAAACTACAATAATAACAACTTCCTTCATGGATCATCAGGCCACAACATCGACGAGCTCAAAGCCTTAATCAACCCTGTCGTCTCTCAGCTCAACGGTATCATCTTTCCTTCAGGGAACAACAACAACGACGAAGACGACTTCGACTTTAACCTCGGCGTGAAAACAGAGCAGTCTTCGAACGGTAACGAAATTGACGTACGAGATTACTTGGAGAACCCTCTGTTTCAGGAAGCGAGTTATGGTCTGTTGGGTTTTTCGTCTTCTCCTGGACCTCTTCACATGCTACTAGATTCTCCATGTCCTTTAGGATTCCAGCTGTAG

Protein Analysis

334

Amino Acids

38.02

Weight (kDa)

6.01

Isoelectric Point (pI)

39.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 23 - 149 1.8e-46 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013567)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76420
fragaria_vesca FvH4_5g25960 FvH4_5g25960 FvH4_5g25960
malus_domestica MD06G1004900.v1.1
prunus_persica Prupe.5G006200_v2.0.a1
pyrus_communis pycom06g00440 pycom16g26170
rosa_chinensis RchiOBHm_Chr7g0216521
rosa_laevigata RLG00000002564
rosa_multiflora Rmu_sc0009638.1_g000003 Rmu_sc0009638.1_g000004
rosa_roxburghii Rroxscaffold_3G00243140
rosa_rugosa Rorug07G0160700
rosa_samantha Rh7AG300000 Rh7BG291900 Rh7CG318600
rosa_wichuraiana Rw7G025510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 11, 181, 345, 466
AclWI GGATC 2 cut(s) 668, 721
AcuI CTGAAG 1 cut(s) 777
AcvI CACGTG 2 cut(s) 407, 474
AfaI GTAC 2 cut(s) 236, 882
AflIII ACRYGT 2 cut(s) 471, 473
AgsI TTSAA 1 cut(s) 508
AjnI CCWGG 2 cut(s) 70, 949
AjuI GAANNNNNNNTTGG 2 cut(s) 362, 394
AluBI AGCT 9 cut(s) 103, 122, 199, 314, 358, 558, 739, 772, 1000
AluI AGCT 9 cut(s) 103, 122, 199, 314, 358, 558, 739, 772, 1000
Alw21I GWGCWC 2 cut(s) 105, 741
Alw26I GTCTC 3 cut(s) 149, 513, 769
AlwI GGATC 2 cut(s) 668, 721
AoxI GGCC 2 cut(s) 409, 721
AseI ATTAAT 1 cut(s) 539
AspS9I GGNCC 1 cut(s) 953
AsuHPI GGTGA 2 cut(s) 77, 502
AsuII TTCGAA 1 cut(s) 860
AvaII GGWCC 1 cut(s) 953
BanII GRGCYC 3 cut(s) 105, 403, 741
BbrPI CACGTG 2 cut(s) 407, 474
BbsI GAAGAC 5 cut(s) 328, 380, 822, 849, 936
Bbv12I GWGCWC 2 cut(s) 105, 741
BccI CCATC 2 cut(s) 211, 664
BcgI CGANNNNNNTGC 2 cut(s) 422, 456
BciT130I CCWGG 2 cut(s) 72, 951
BciVI GTATCC 1 cut(s) 296
BcoDI GTCTC 3 cut(s) 149, 513, 769
BfaI CTAG 1 cut(s) 971
BfmI CTRYAG 1 cut(s) 1001
BfuI GTATCC 1 cut(s) 296
Bme1390I CCNGG 2 cut(s) 72, 951
Bme18I GGWCC 1 cut(s) 953
BmgT120I GGNCC 1 cut(s) 953
BmiI GGNNCC 1 cut(s) 402
BmrFI CCNGG 2 cut(s) 72, 951
BpiI GAAGAC 5 cut(s) 328, 380, 822, 849, 936
Bpu14I TTCGAA 1 cut(s) 860
BpuEI CTTGAG 1 cut(s) 398
BsaAI YACGTR 2 cut(s) 407, 474
BsaI GGTCTC 1 cut(s) 149
BsaJI CCNNGG 3 cut(s) 136, 191, 835
BsaWI WCCGGW 1 cut(s) 78
Bse118I RCCGGY 1 cut(s) 317
Bse1I ACTGG 1 cut(s) 311
BseBI CCWGG 2 cut(s) 72, 951
BseDI CCNNGG 3 cut(s) 136, 191, 835
BseGI GGATG 1 cut(s) 372
BseMII CTCAG 1 cut(s) 782
BseNI ACTGG 1 cut(s) 311
BseRI GAGGAG 1 cut(s) 363
BshFI GGCC 2 cut(s) 411, 723
BsiHKAI GWGCWC 2 cut(s) 105, 741
BsiSI CCGG 5 cut(s) 39, 79, 150, 318, 342
BsiWI CGTACG 1 cut(s) 880
BslFI GGGAC 1 cut(s) 266
BsmAI GTCTC 3 cut(s) 149, 513, 769
BsmBI CGTCTC 1 cut(s) 769
BsmFI GGGAC 1 cut(s) 266
BsmI GAATGC 1 cut(s) 153
BsnI GGCC 2 cut(s) 411, 723
Bso31I GGTCTC 1 cut(s) 149
Bsp119I TTCGAA 1 cut(s) 860
Bsp1286I GDGCHC 3 cut(s) 105, 403, 741
Bsp143I GATC 3 cut(s) 172, 673, 713
Bsp19I CCATGG 1 cut(s) 136
BspACI CCGC 4 cut(s) 11, 181, 345, 466
BspANI GGCC 2 cut(s) 411, 723
BspCNI CTCAG 1 cut(s) 781
BspHI TCATGA 1 cut(s) 601
BspLI GGNNCC 1 cut(s) 402
BspPI GGATC 2 cut(s) 668, 721
BspQI GCTCTTC 1 cut(s) 93
BspT104I TTCGAA 1 cut(s) 860
BspTNI GGTCTC 1 cut(s) 149
BsrFI RCCGGY 1 cut(s) 317
BsrI ACTGG 1 cut(s) 311
BssAI RCCGGY 1 cut(s) 317
BssECI CCNNGG 3 cut(s) 136, 191, 835
BssMI GATC 3 cut(s) 172, 673, 713
BssT1I CCWWGG 2 cut(s) 136, 191
Bst2UI CCWGG 2 cut(s) 72, 951
Bst4CI ACNGT 2 cut(s) 779, 866
Bst6I CTCTTC 2 cut(s) 93, 963
BstAPI GCANNNNNTGC 1 cut(s) 296
BstBAI YACGTR 2 cut(s) 407, 474
BstBI TTCGAA 1 cut(s) 860
BstC8I GCNNGC 1 cut(s) 9
BstDEI CTNAG 4 cut(s) 118, 248, 420, 768
BstDSI CCRYGG 1 cut(s) 136
BstF5I GGATG 1 cut(s) 372
BstKTI GATC 3 cut(s) 175, 676, 716
BstMAI GTCTC 3 cut(s) 149, 513, 769
BstMBI GATC 3 cut(s) 172, 673, 713
BstMWI GCNNNNNNNGC 1 cut(s) 296
BstNI CCWGG 2 cut(s) 72, 951
BstNSI RCATGY 1 cut(s) 967
BstSCI CCNGG 2 cut(s) 70, 949
BstSFI CTRYAG 1 cut(s) 1001
BstV2I GAAGAC 5 cut(s) 328, 380, 822, 849, 936
BsuI GTATCC 1 cut(s) 296
BsuRI GGCC 2 cut(s) 411, 723
BtgI CCRYGG 1 cut(s) 136
BtsCI GGATG 1 cut(s) 372
Cac8I GCNNGC 1 cut(s) 9
CciI TCATGA 1 cut(s) 601
Cfr10I RCCGGY 1 cut(s) 317
Cfr13I GGNCC 1 cut(s) 953
Csp6I GTAC 2 cut(s) 235, 881
CviAII CATG 7 cut(s) 137, 430, 434, 602, 710, 964, 981
CviQI GTAC 2 cut(s) 235, 881
DdeI CTNAG 4 cut(s) 118, 248, 420, 768
DpnI GATC 3 cut(s) 174, 675, 715
DpnII GATC 3 cut(s) 172, 673, 713
Eam1104I CTCTTC 2 cut(s) 93, 963
EarI CTCTTC 2 cut(s) 93, 963
EciI GGCGGA 1 cut(s) 360
Ecl136II GAGCTC 2 cut(s) 103, 739
Eco130I CCWWGG 2 cut(s) 136, 191
Eco24I GRGCYC 3 cut(s) 105, 403, 741
Eco31I GGTCTC 1 cut(s) 149
Eco47I GGWCC 1 cut(s) 953
Eco53kI GAGCTC 2 cut(s) 103, 739
Eco57I CTGAAG 1 cut(s) 777
Eco72I CACGTG 2 cut(s) 407, 474
EcoICRI GAGCTC 2 cut(s) 103, 739
EcoRII CCWGG 2 cut(s) 70, 949
EcoT14I CCWWGG 2 cut(s) 136, 191
EcoT22I ATGCAT 1 cut(s) 435
EcoT38I GRGCYC 3 cut(s) 105, 403, 741
ErhI CCWWGG 2 cut(s) 136, 191
Esp3I CGTCTC 1 cut(s) 769
FaeI CATG 7 cut(s) 140, 433, 437, 605, 713, 967, 984
FalI AAGNNNNNCTT 2 cut(s) 320, 352
FaqI GGGAC 1 cut(s) 266
FatI CATG 7 cut(s) 136, 429, 433, 601, 709, 963, 980
FokI GGATG 1 cut(s) 379
FriOI GRGCYC 3 cut(s) 105, 403, 741
FspBI CTAG 1 cut(s) 971
HaeIII GGCC 2 cut(s) 411, 723
HapII CCGG 5 cut(s) 39, 79, 150, 318, 342
Hin1II CATG 7 cut(s) 140, 433, 437, 605, 713, 967, 984
HinfI GANTC 2 cut(s) 974, 993
HpaII CCGG 5 cut(s) 39, 79, 150, 318, 342
HphI GGTGA 2 cut(s) 77, 502
Hpy166II GTNNAC 1 cut(s) 188
Hpy188I TCNGA 2 cut(s) 166, 267
Hpy188III TCNNGA 3 cut(s) 415, 602, 911
Hpy8I GTNNAC 1 cut(s) 188
Hpy99I CGWCG 3 cut(s) 94, 737, 815
HpyAV CCTTC 5 cut(s) 121, 572, 639, 716, 801
HpyCH4III ACNGT 2 cut(s) 779, 866
HpyCH4IV ACGT 4 cut(s) 377, 406, 473, 879
HpyCH4V TGCA 2 cut(s) 433, 498
HpyF10VI GCNNNNNNNGC 1 cut(s) 296
HpyF3I CTNAG 4 cut(s) 118, 248, 420, 768
HpySE526I ACGT 4 cut(s) 377, 406, 473, 879
Hsp92II CATG 7 cut(s) 140, 433, 437, 605, 713, 967, 984
Kzo9I GATC 3 cut(s) 172, 673, 713
LguI GCTCTTC 1 cut(s) 93
LmnI GCTCC 2 cut(s) 196, 406
MaeI CTAG 1 cut(s) 971
MaeII ACGT 4 cut(s) 377, 406, 473, 879
MaeIII GTNAC 1 cut(s) 866
MalI GATC 3 cut(s) 174, 675, 715
MboI GATC 3 cut(s) 172, 673, 713
MhlI GDGCHC 3 cut(s) 105, 403, 741
MluCI AATT 1 cut(s) 873
MmeI TCCRAC 3 cut(s) 290, 514, 657
Mph1103I ATGCAT 1 cut(s) 435
MseI TTAA 4 cut(s) 26, 539, 749, 831
MslI CAYNNNNRTG 1 cut(s) 600
MspA1I CMGCKG 2 cut(s) 183, 1000
MspI CCGG 5 cut(s) 39, 79, 150, 318, 342
MspR9I CCNGG 2 cut(s) 72, 951
Mva1269I GAATGC 1 cut(s) 153
MvaI CCWGG 2 cut(s) 72, 951
MwoI GCNNNNNNNGC 1 cut(s) 296
NcoI CCATGG 1 cut(s) 136
NdeII GATC 3 cut(s) 172, 673, 713
NlaIII CATG 7 cut(s) 140, 433, 437, 605, 713, 967, 984
NlaIV GGNNCC 1 cut(s) 402
NmeAIII GCCGAG 1 cut(s) 816
NsiI ATGCAT 1 cut(s) 435
NspI RCATGY 1 cut(s) 967
NspV TTCGAA 1 cut(s) 860
PagI TCATGA 1 cut(s) 601
PciSI GCTCTTC 1 cut(s) 93
PcsI WCGNNNNNNNCGW 2 cut(s) 816, 876
PctI GAATGC 1 cut(s) 153
PfeI GAWTC 2 cut(s) 974, 993
Pfl23II CGTACG 1 cut(s) 880
PfoI TCCNGGA 1 cut(s) 949
PmaCI CACGTG 2 cut(s) 407, 474
PmlI CACGTG 2 cut(s) 407, 474
Ppu21I YACGTR 2 cut(s) 407, 474
PshBI ATTAAT 1 cut(s) 539
Psp124BI GAGCTC 2 cut(s) 105, 741
Psp6I CCWGG 2 cut(s) 70, 949
PspCI CACGTG 2 cut(s) 407, 474
PspGI CCWGG 2 cut(s) 70, 949
PspLI CGTACG 1 cut(s) 880
PspN4I GGNNCC 1 cut(s) 402
PspPI GGNCC 1 cut(s) 953
PvuII CAGCTG 1 cut(s) 1000
RsaI GTAC 2 cut(s) 236, 882
RsaNI GTAC 2 cut(s) 235, 881
RseI CAYNNNNRTG 1 cut(s) 600
SacI GAGCTC 2 cut(s) 105, 741
SapI GCTCTTC 1 cut(s) 93
SaqAI TTAA 4 cut(s) 26, 539, 749, 831
Sau3AI GATC 3 cut(s) 172, 673, 713
Sau96I GGNCC 1 cut(s) 953
ScrFI CCNGG 2 cut(s) 72, 951
SduI GDGCHC 3 cut(s) 105, 403, 741
SfcI CTRYAG 1 cut(s) 1001
SfuI TTCGAA 1 cut(s) 860
SinI GGWCC 1 cut(s) 953
SmiMI CAYNNNNRTG 1 cut(s) 600
SmlI CTYRAG 1 cut(s) 413
SmoI CTYRAG 1 cut(s) 413
Sse9I AATT 1 cut(s) 873
SsiI CCGC 4 cut(s) 11, 181, 345, 466
SspMI CTAG 1 cut(s) 971
SstI GAGCTC 2 cut(s) 105, 741
StyD4I CCNGG 2 cut(s) 70, 949
StyI CCWWGG 2 cut(s) 136, 191
TaaI ACNGT 2 cut(s) 779, 866
TaiI ACGT 4 cut(s) 380, 409, 476, 882
TaqI TCGA 4 cut(s) 447, 732, 825, 860
TasI AATT 1 cut(s) 873
TfiI GAWTC 2 cut(s) 974, 993
Tru1I TTAA 4 cut(s) 26, 539, 749, 831
Tru9I TTAA 4 cut(s) 26, 539, 749, 831
TspDTI ATGAA 4 cut(s) 383, 554, 618, 698
TspGWI ACGGA 1 cut(s) 107
VpaK11BI GGWCC 1 cut(s) 953
VspI ATTAAT 1 cut(s) 539
XceI RCATGY 1 cut(s) 967
XspI CTAG 1 cut(s) 971
Zsp2I ATGCAT 1 cut(s) 435
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.