Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0013567

Physical Location & Seq

Genomic Coordinates Forward (+)

707797 .. 710859

Gene Structure 3063 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G006200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1314 bp

ATGTTGGGAATGGAAGACGCAGTTATGAGTGAGCTGAGTGGGGAAGACATAAACGAGCAGGGTTTGCCGCCAGGGTTTAGGTTCCACCCAACTGACGAGGAGCTCATAACTTTCTATCTGGCTTCCAAGGTCTACAACGGCTCTTTCTGCGGCGTCGACATTGCTGAGGTTGACCTCAACAGATGCGAGCCCTGGGAGCTCCCAGATATGGCAAAGATGGGGGATAGAGAGTGGTACTTCTTCAGCTTGAGGGACAGGAAGTACCCAACAGGGTTAAGAACCAACAGGGCCACCGGAGCTGGTTACTGGAAAGCCACTGGCAAGGACAGACAAGTGTACAGCGCATCCACCGGAGCCTTGCTTGGCATGAAGAAGACTCTTGTTTTCTACAAAGGCCGAGCCCCGCGCGGCCACAAGACCAAGTGGGTCATGCACGAGTACCGCCTCCACGGTCACCTCTCCTCCTACGGCGGCCACGCCTGCAAGGATGAATGGGTGATATGCAGAATAAATCACAAAACAGGGGACAAAAAAATCCCACTACAACTTGATCAAGTTGAAGTTGAAGCTGCTTCATCCAATTACAATTGCCTGCCTCCATTGCTGGAATCTCCAACAGCAGCAGCAAAACCTACATTCTTGCAACAAGGACAATGTCCTCATCAATCTCACAACCCAATGCAAATGCAATCTCCTCATCCTCTTCCTCCTTTTCTGTTTCGGCACCAAGAAAATGACCTCAAAAGCCTCATCAACCCAGTTGTCTCCCAACCCCACCTATTTTCCTCCTTCCCAATAAATGCCTTGCAAACCCAATCCTCTTTTTCACCCACCACCACCAACAGCAACACAGCATTATTAACAAATGATAAAAACCCATCACCTTTGCAATCCCTCCTCTTCAAATCCCTCTTCTCTTCCCATGACCAAGATTGCAATAATACTATTCCCAAACAGTGCAAGACAGAGCCCAACTACTTTTCCCATTTCCAAACACCAGCTAATAATAATAATAATAATTGTGACTTGAACTCGTTGAACTTGATGGAAAAGAATCATCATCATCTTCATCAGCCAAACACCCCCTACCATCAATACAGTAATCATCCAAATGATCCTTTGCTTTTTGATTGTTTGGATTATAGTGTGTTGGGCTTCCCAGATGCTGCTGGTACTGCTACAACTGTTCATGAGCATGACACGTGTCCTTCAACTGCTTTCAACAGGGCCGCCTTTCAGACCATGCTAGACCTTCCTCCCATCAAAGTAACCGGAGAATCTTGGCCTTTGGATTATATCATGGATGCTAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009653 GO:0009888 GO:0009889 GO:0009933 GO:0010014 GO:0010199 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032502 GO:0048507 GO:0048532 GO:0048646 GO:0048856 GO:0048859 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0090691 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

438

Amino Acids

49.28

Weight (kDa)

6.25

Isoelectric Point (pI)

37.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013567)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76420
fragaria_vesca	FvH4_5g25960 FvH4_5g25960 FvH4_5g25960
malus_domestica	MD06G1004900.v1.1
prunus_persica	Prupe.5G006200_v2.0.a1
pyrus_communis	pycom06g00440 pycom16g26170
rosa_chinensis	RchiOBHm_Chr7g0216521
rosa_laevigata	RLG00000002564
rosa_multiflora	Rmu_sc0009638.1_g000003 Rmu_sc0009638.1_g000004
rosa_roxburghii	Rroxscaffold_3G00243140
rosa_rugosa	Rorug07G0160700
rosa_samantha	Rh7AG300000 Rh7BG291900 Rh7CG318600
rosa_wichuraiana	Rw7G025510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	723
AccI	GTMKAC	2 cut(s)	132, 156
AccII	CGCG	2 cut(s)	406, 408
AciI	CCGC	7 cut(s)	68, 150, 404, 408, 442, 471, 1230
AclWI	GGATC	1 cut(s)	1109
AcoI	YGGCCR	2 cut(s)	409, 472
AcuI	CTGAAG	1 cut(s)	226
AcvI	CACGTG	1 cut(s)	1203
AcyI	GRCGYC	1 cut(s)	153
AfaI	GTAC	5 cut(s)	236, 263, 338, 440, 1174
AfiI	CCNNNNNNNGG	1 cut(s)	208
AflIII	ACRYGT	2 cut(s)	1200, 1202
AgsI	TTSAA	7 cut(s)	560, 566, 904, 1030, 1039, 1212, 1222
AjnI	CCWGG	2 cut(s)	70, 191
AluBI	AGCT	7 cut(s)	34, 103, 199, 246, 299, 569, 1001
AluI	AGCT	7 cut(s)	34, 103, 199, 246, 299, 569, 1001
Alw21I	GWGCWC	2 cut(s)	105, 201
Alw26I	GTCTC	1 cut(s)	769
AlwI	GGATC	1 cut(s)	1109
AlwNI	CAGNNNCTG	1 cut(s)	1166
AoxI	GGCC	6 cut(s)	288, 394, 409, 472, 1227, 1283
ApeKI	GCWGC	4 cut(s)	569, 620, 623, 1166
AspLEI	GCGC	2 cut(s)	344, 408
AspS9I	GGNCC	2 cut(s)	288, 1227
AsuHPI	GGTGA	4 cut(s)	446, 508, 819, 873
BanI	GGYRCC	1 cut(s)	723
BanII	GRGCYC	5 cut(s)	105, 192, 201, 403, 972
BauI	CACGAG	1 cut(s)	434
BbrPI	CACGTG	1 cut(s)	1203
BbsI	GAAGAC	3 cut(s)	21, 51, 380
Bbv12I	GWGCWC	2 cut(s)	105, 201
BbvCI	CCTCAGC	1 cut(s)	165
BbvI	GCAGC	4 cut(s)	556, 632, 635, 1153
BccI	CCATC	5 cut(s)	211, 886, 1039, 1098, 1268
BceAI	ACGGC	2 cut(s)	154, 484
BciT130I	CCWGG	2 cut(s)	72, 193
BclI	TGATCA	1 cut(s)	550
BcoDI	GTCTC	1 cut(s)	769
BfaI	CTAG	1 cut(s)	1247
BisI	GCNGC	9 cut(s)	68, 151, 409, 472, 570, 621, 624, 1167, 1230
BlsI	GCNGC	9 cut(s)	69, 152, 410, 473, 571, 622, 625, 1168, 1231
Bme1390I	CCNGG	2 cut(s)	72, 193
BmgT120I	GGNCC	2 cut(s)	288, 1227
BmiI	GGNNCC	3 cut(s)	83, 355, 725
BmrFI	CCNGG	2 cut(s)	72, 193
BmrI	ACTGGG	1 cut(s)	752
BmsI	GCATC	4 cut(s)	173, 353, 1153, 1294
BmuI	ACTGGG	1 cut(s)	752
BoxI	GACNNNNGTC	1 cut(s)	1203
BpiI	GAAGAC	3 cut(s)	21, 51, 380
Bpu10I	CCTNAGC	1 cut(s)	165
BpuEI	CTTGAG	1 cut(s)	268
BsaAI	YACGTR	1 cut(s)	1203
BsaHI	GRCGYC	1 cut(s)	153
BsaJI	CCNNGG	5 cut(s)	71, 126, 191, 192, 448
BsaWI	WCCGGW	3 cut(s)	293, 350, 1271
BsaXI	ACNNNNNCTCC	2 cut(s)	446, 476
Bsc4I	CCNNNNNNNGG	1 cut(s)	208
Bse1I	ACTGG	3 cut(s)	311, 322, 758
Bse3DI	GCAATG	2 cut(s)	159, 599
BseBI	CCWGG	2 cut(s)	72, 193
BseDI	CCNNGG	5 cut(s)	71, 126, 191, 192, 448
BseGI	GGATG	6 cut(s)	344, 493, 575, 697, 1105, 1309
BseLI	CCNNNNNNNGG	1 cut(s)	208
BseMI	GCAATG	2 cut(s)	159, 599
BseMII	CTCAG	2 cut(s)	26, 156
BseNI	ACTGG	3 cut(s)	311, 322, 758
BseRI	GAGGAG	4 cut(s)	113, 451, 684, 887
BseXI	GCAGC	4 cut(s)	556, 632, 635, 1153
Bsh1236I	CGCG	2 cut(s)	406, 408
BshFI	GGCC	6 cut(s)	290, 396, 411, 474, 1229, 1285
BshNI	GGYRCC	1 cut(s)	723
BsiHKAI	GWGCWC	2 cut(s)	105, 201
BsiSI	CCGG	3 cut(s)	294, 351, 1272
BslFI	GGGAC	2 cut(s)	266, 539
BslI	CCNNNNNNNGG	1 cut(s)	208
BsmAI	GTCTC	1 cut(s)	769
BsmFI	GGGAC	2 cut(s)	266, 539
BsnI	GGCC	6 cut(s)	290, 396, 411, 474, 1229, 1285
Bsp1286I	GDGCHC	5 cut(s)	105, 192, 201, 403, 972
Bsp1407I	TGTACA	1 cut(s)	336
Bsp143I	GATC	2 cut(s)	550, 1114
BspACI	CCGC	7 cut(s)	68, 150, 404, 408, 442, 471, 1230
BspANI	GGCC	6 cut(s)	290, 396, 411, 474, 1229, 1285
BspCNI	CTCAG	2 cut(s)	27, 157
BspFNI	CGCG	2 cut(s)	406, 408
BspHI	TCATGA	1 cut(s)	1189
BspLI	GGNNCC	3 cut(s)	83, 355, 725
BspPI	GGATC	1 cut(s)	1109
BspT107I	GGYRCC	1 cut(s)	723
BsrDI	GCAATG	2 cut(s)	159, 599
BsrGI	TGTACA	1 cut(s)	336
BsrI	ACTGG	3 cut(s)	311, 322, 758
BssECI	CCNNGG	5 cut(s)	71, 126, 191, 192, 448
BssMI	GATC	2 cut(s)	550, 1114
BssNI	GRCGYC	1 cut(s)	153
BssSI	CACGAG	1 cut(s)	434
BssT1I	CCWWGG	1 cut(s)	126
Bst2BI	CACGAG	1 cut(s)	434
Bst2UI	CCWGG	2 cut(s)	72, 193
Bst4CI	ACNGT	4 cut(s)	452, 957, 1100, 1186
Bst6I	CTCTTC	4 cut(s)	708, 905, 917, 922
BstACI	GRCGYC	1 cut(s)	153
BstAPI	GCANNNNNTGC	1 cut(s)	64
BstAUI	TGTACA	1 cut(s)	336
BstBAI	YACGTR	1 cut(s)	1203
BstC8I	GCNNGC	3 cut(s)	188, 481, 593
BstDEI	CTNAG	3 cut(s)	35, 165, 1308
BstDSI	CCRYGG	1 cut(s)	448
BstEII	GGTNACC	1 cut(s)	452
BstF5I	GGATG	6 cut(s)	344, 493, 575, 697, 1105, 1309
BstFNI	CGCG	2 cut(s)	406, 408
BstHHI	GCGC	2 cut(s)	344, 408
BstKTI	GATC	2 cut(s)	553, 1117
BstMAI	GTCTC	1 cut(s)	769
BstMBI	GATC	2 cut(s)	550, 1114
BstMWI	GCNNNNNNNGC	7 cut(s)	64, 147, 196, 296, 480, 601, 1175
BstNI	CCWGG	2 cut(s)	72, 193
BstPAI	GACNNNNGTC	1 cut(s)	1203
BstPI	GGTNACC	1 cut(s)	452
BstSCI	CCNGG	2 cut(s)	70, 191
BstUI	CGCG	2 cut(s)	406, 408
BstV1I	GCAGC	4 cut(s)	556, 632, 635, 1153
BstV2I	GAAGAC	3 cut(s)	21, 51, 380
BsuRI	GGCC	6 cut(s)	290, 396, 411, 474, 1229, 1285
BtgI	CCRYGG	1 cut(s)	448
BtsCI	GGATG	6 cut(s)	344, 493, 575, 697, 1105, 1309
BtsIMutI	CAGTG	2 cut(s)	315, 962
Cac8I	GCNNGC	3 cut(s)	188, 481, 593
CaiI	CAGNNNCTG	1 cut(s)	1166
CciI	TCATGA	1 cut(s)	1189
CfoI	GCGC	2 cut(s)	344, 408
Cfr13I	GGNCC	2 cut(s)	288, 1227
CseI	GACGC	2 cut(s)	26, 142
Csp6I	GTAC	5 cut(s)	235, 262, 337, 439, 1173
CviAII	CATG	7 cut(s)	367, 430, 923, 1190, 1196, 1243, 1300
CviQI	GTAC	5 cut(s)	235, 262, 337, 439, 1173
DdeI	CTNAG	3 cut(s)	35, 165, 1308
DpnI	GATC	2 cut(s)	552, 1116
DpnII	GATC	2 cut(s)	550, 1114
EaeI	YGGCCR	2 cut(s)	409, 472
Eam1104I	CTCTTC	4 cut(s)	708, 905, 917, 922
EarI	CTCTTC	4 cut(s)	708, 905, 917, 922
Ecl136II	GAGCTC	2 cut(s)	103, 199
Eco130I	CCWWGG	1 cut(s)	126
Eco24I	GRGCYC	5 cut(s)	105, 192, 201, 403, 972
Eco53kI	GAGCTC	2 cut(s)	103, 199
Eco57I	CTGAAG	1 cut(s)	226
Eco72I	CACGTG	1 cut(s)	1203
Eco91I	GGTNACC	1 cut(s)	452
EcoICRI	GAGCTC	2 cut(s)	103, 199
EcoO65I	GGTNACC	1 cut(s)	452
EcoRII	CCWGG	2 cut(s)	70, 191
EcoT14I	CCWWGG	1 cut(s)	126
EcoT38I	GRGCYC	5 cut(s)	105, 192, 201, 403, 972
ErhI	CCWWGG	1 cut(s)	126
FaeI	CATG	7 cut(s)	370, 433, 926, 1193, 1199, 1246, 1303
FaqI	GGGAC	2 cut(s)	266, 539
FatI	CATG	7 cut(s)	366, 429, 922, 1189, 1195, 1242, 1299
FauI	CCCGC	1 cut(s)	411
FbaI	TGATCA	1 cut(s)	550
FblI	GTMKAC	2 cut(s)	132, 156
Fnu4HI	GCNGC	9 cut(s)	68, 151, 409, 472, 570, 621, 624, 1167, 1230
FokI	GGATG	5 cut(s)	331, 500, 562, 684, 1092
FriOI	GRGCYC	5 cut(s)	105, 192, 201, 403, 972
Fsp4HI	GCNGC	9 cut(s)	68, 151, 409, 472, 570, 621, 624, 1167, 1230
FspBI	CTAG	1 cut(s)	1247
GlaI	GCGC	2 cut(s)	343, 407
GluI	GCNGC	9 cut(s)	68, 151, 409, 472, 570, 621, 624, 1167, 1230
HaeIII	GGCC	6 cut(s)	290, 396, 411, 474, 1229, 1285
HapII	CCGG	3 cut(s)	294, 351, 1272
HgaI	GACGC	2 cut(s)	26, 142
HhaI	GCGC	2 cut(s)	344, 408
Hin1I	GRCGYC	1 cut(s)	153
Hin1II	CATG	7 cut(s)	370, 433, 926, 1193, 1199, 1246, 1303
Hin6I	GCGC	2 cut(s)	342, 406
HinP1I	GCGC	2 cut(s)	342, 406
HincII	GTYRAC	2 cut(s)	157, 172
HindII	GTYRAC	2 cut(s)	157, 172
HinfI	GANTC	4 cut(s)	376, 608, 1054, 1277
HpaII	CCGG	3 cut(s)	294, 351, 1272
HphI	GGTGA	4 cut(s)	446, 508, 819, 873
Hpy166II	GTNNAC	4 cut(s)	133, 157, 172, 337
Hpy188I	TCNGA	1 cut(s)	1239
Hpy188III	TCNNGA	1 cut(s)	1190
Hpy8I	GTNNAC	4 cut(s)	133, 157, 172, 337
Hpy99I	CGWCG	1 cut(s)	158
HpyAV	CCTTC	3 cut(s)	799, 1218, 1262
HpyCH4III	ACNGT	4 cut(s)	452, 957, 1100, 1186
HpyCH4IV	ACGT	1 cut(s)	1202
HpyF10VI	GCNNNNNNNGC	7 cut(s)	64, 147, 196, 296, 480, 601, 1175
HpyF3I	CTNAG	3 cut(s)	35, 165, 1308
HpySE526I	ACGT	1 cut(s)	1202
Hsp92I	GRCGYC	1 cut(s)	153
Hsp92II	CATG	7 cut(s)	370, 433, 926, 1193, 1199, 1246, 1303
HspAI	GCGC	2 cut(s)	342, 406
Ksp22I	TGATCA	1 cut(s)	550
Kzo9I	GATC	2 cut(s)	550, 1114
LmnI	GCTCC	5 cut(s)	100, 196, 204, 296, 353
Lsp1109I	GCAGC	4 cut(s)	556, 632, 635, 1153
LweI	GCATC	4 cut(s)	173, 353, 1153, 1294
MaeI	CTAG	1 cut(s)	1247
MaeII	ACGT	1 cut(s)	1202
MaeIII	GTNAC	4 cut(s)	302, 452, 1022, 1267
MalI	GATC	2 cut(s)	552, 1116
MboI	GATC	2 cut(s)	550, 1114
MfeI	CAATTG	1 cut(s)	586
MhlI	GDGCHC	5 cut(s)	105, 192, 201, 403, 972
MluCI	AATT	3 cut(s)	580, 586, 1018
MlyI	GAGTC	1 cut(s)	370
MmeI	TCCRAC	1 cut(s)	638
MseI	TTAA	2 cut(s)	275, 860
MslI	CAYNNNNRTG	2 cut(s)	1110, 1194
MspI	CCGG	3 cut(s)	294, 351, 1272
MspR9I	CCNGG	2 cut(s)	72, 193
MunI	CAATTG	1 cut(s)	586
MvaI	CCWGG	2 cut(s)	72, 193
MvnI	CGCG	2 cut(s)	406, 408
MwoI	GCNNNNNNNGC	7 cut(s)	64, 147, 196, 296, 480, 601, 1175
NdeII	GATC	2 cut(s)	550, 1114
NlaIII	CATG	7 cut(s)	370, 433, 926, 1193, 1199, 1246, 1303
NlaIV	GGNNCC	3 cut(s)	83, 355, 725
NmeAIII	GCCGAG	1 cut(s)	422
NmuCI	GTSAC	2 cut(s)	452, 1022
PagI	TCATGA	1 cut(s)	1189
PasI	CCCWGGG	1 cut(s)	192
PfeI	GAWTC	3 cut(s)	608, 1054, 1277
PflFI	GACNNNGTC	1 cut(s)	654
PkrI	GCNGC	9 cut(s)	69, 152, 410, 473, 571, 622, 625, 1168, 1231
PleI	GAGTC	1 cut(s)	370
PmaCI	CACGTG	1 cut(s)	1203
PmlI	CACGTG	1 cut(s)	1203
PpsI	GAGTC	1 cut(s)	370
Ppu21I	YACGTR	1 cut(s)	1203
PshAI	GACNNNNGTC	1 cut(s)	1203
Psp124BI	GAGCTC	2 cut(s)	105, 201
Psp6I	CCWGG	2 cut(s)	70, 191
PspCI	CACGTG	1 cut(s)	1203
PspEI	GGTNACC	1 cut(s)	452
PspGI	CCWGG	2 cut(s)	70, 191
PspN4I	GGNNCC	3 cut(s)	83, 355, 725
PspPI	GGNCC	2 cut(s)	288, 1227
PstNI	CAGNNNCTG	1 cut(s)	1166
PsyI	GACNNNGTC	1 cut(s)	654
RsaI	GTAC	5 cut(s)	236, 263, 338, 440, 1174
RsaNI	GTAC	5 cut(s)	235, 262, 337, 439, 1173
RseI	CAYNNNNRTG	2 cut(s)	1110, 1194
SacI	GAGCTC	2 cut(s)	105, 201
SalI	GTCGAC	1 cut(s)	155
SaqAI	TTAA	2 cut(s)	275, 860
SatI	GCNGC	9 cut(s)	68, 151, 409, 472, 570, 621, 624, 1167, 1230
Sau3AI	GATC	2 cut(s)	550, 1114
Sau96I	GGNCC	2 cut(s)	288, 1227
SchI	GAGTC	1 cut(s)	370
ScrFI	CCNGG	2 cut(s)	72, 193
SduI	GDGCHC	5 cut(s)	105, 192, 201, 403, 972
SfaNI	GCATC	4 cut(s)	173, 353, 1153, 1294
SmiMI	CAYNNNNRTG	2 cut(s)	1110, 1194
SmlI	CTYRAG	1 cut(s)	247
SmoI	CTYRAG	1 cut(s)	247
Sse9I	AATT	3 cut(s)	580, 586, 1018
SsiI	CCGC	7 cut(s)	68, 150, 404, 408, 442, 471, 1230
SspMI	CTAG	1 cut(s)	1247
SstI	GAGCTC	2 cut(s)	105, 201
StyD4I	CCNGG	2 cut(s)	70, 191
StyI	CCWWGG	1 cut(s)	126
TaaI	ACNGT	4 cut(s)	452, 957, 1100, 1186
TaiI	ACGT	1 cut(s)	1205
TaqI	TCGA	1 cut(s)	156
TasI	AATT	3 cut(s)	580, 586, 1018
TatI	WGTACW	1 cut(s)	336
TauI	GCSGC	5 cut(s)	70, 153, 411, 474, 1232
TfiI	GAWTC	3 cut(s)	608, 1054, 1277
Tru1I	TTAA	2 cut(s)	275, 860
Tru9I	TTAA	2 cut(s)	275, 860
TscAI	CASTG	2 cut(s)	322, 962
TseFI	GTSAC	2 cut(s)	452, 1022
TseI	GCWGC	4 cut(s)	569, 620, 623, 1166
Tsp45I	GTSAC	2 cut(s)	452, 1022
TspDTI	ATGAA	5 cut(s)	383, 504, 564, 1058, 1178
TspRI	CASTG	2 cut(s)	322, 962
Tth111I	GACNNNGTC	1 cut(s)	654
XmiI	GTMKAC	2 cut(s)	132, 156
XspI	CTAG	1 cut(s)	1247

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.