Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009638.1

Orthogroup ID

OG0013567

Physical Location & Seq

Genomic Coordinates Reverse (-)

13425 .. 14242

Gene Structure 818 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009638.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

atggaagaagttatgagtgagctgatgggtagggaagagctgaacgaacaaggtcttccacctggtttcaggttccacccaactgatgaggagctcatcaccttttacctcgcttccaaggtctacaatggcgctttctgcggcgtcgacatcgctgaggtcgatctcaacagatgtgagccctgggagctaccagcactgcactccatgctcttcaagtcactcctctattcacatcaagatcaagctggcactggtactagtgctcctaaacagtgcaaggcagaggctgctaatctttcccagttccaaaccccacctcttaatgctgctaacttcaactacttgatggaaaagaatcactctcatcatcaaccaaacgtcccagactcattgcttcagtttcatcaccatccccgaaatgcactctctttcgatgacttccattattacaatggtgtgttggggctttctacatctgctactgctgctgtagatgctgagacttcttccgcttccattggtggtttcaacagggcaggctttcagaccatgttagatcctctcatcaaactccctgctgcagaatcttggaatctggatatcgcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009653 GO:0009888 GO:0009889 GO:0009933 GO:0010014 GO:0010199 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032502 GO:0048507 GO:0048532 GO:0048646 GO:0048856 GO:0048859 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0090691 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

203

Amino Acids

22.48

Weight (kDa)

4.94

Isoelectric Point (pI)

33.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013567)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76420
fragaria_vesca	FvH4_5g25960 FvH4_5g25960 FvH4_5g25960
malus_domestica	MD06G1004900.v1.1
prunus_persica	Prupe.5G006200_v2.0.a1
pyrus_communis	pycom06g00440 pycom16g26170
rosa_chinensis	RchiOBHm_Chr7g0216521
rosa_laevigata	RLG00000002564
rosa_multiflora	Rmu_sc0009638.1_g000003 Rmu_sc0009638.1_g000004
rosa_roxburghii	Rroxscaffold_3G00243140
rosa_rugosa	Rorug07G0160700
rosa_samantha	Rh7AG300000 Rh7BG291900 Rh7CG318600
rosa_wichuraiana	Rw7G025510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	123, 147
AciI	CCGC	2 cut(s)	141, 513
AclWI	GGATC	1 cut(s)	554
AcuI	CTGAAG	1 cut(s)	383
AcyI	GRCGYC	1 cut(s)	144
AfaI	GTAC	1 cut(s)	259
AgsI	TTSAA	3 cut(s)	217, 340, 532
AhlI	ACTAGT	1 cut(s)	260
AjnI	CCWGG	2 cut(s)	61, 182
AluBI	AGCT	5 cut(s)	22, 40, 94, 190, 248
AluI	AGCT	5 cut(s)	22, 40, 94, 190, 248
Alw21I	GWGCWC	2 cut(s)	96, 268
Alw26I	GTCTC	1 cut(s)	497
AlwI	GGATC	1 cut(s)	554
AlwNI	CAGNNNCTG	1 cut(s)	290
ApeKI	GCWGC	4 cut(s)	290, 329, 488, 581
AspLEI	GCGC	1 cut(s)	134
AsuHPI	GGTGA	2 cut(s)	91, 401
BanII	GRGCYC	2 cut(s)	96, 183
BbsI	GAAGAC	1 cut(s)	47
Bbv12I	GWGCWC	2 cut(s)	96, 268
BbvCI	CCTCAGC	1 cut(s)	156
BbvI	GCAGC	4 cut(s)	277, 316, 475, 568
BccI	CCATC	3 cut(s)	19, 343, 420
BciT130I	CCWGG	2 cut(s)	63, 184
BcoDI	GTCTC	1 cut(s)	497
BcuI	ACTAGT	1 cut(s)	260
BfaI	CTAG	1 cut(s)	261
BfmI	CTRYAG	2 cut(s)	492, 582
BfoI	RGCGCY	1 cut(s)	135
BisI	GCNGC	5 cut(s)	142, 291, 330, 489, 582
BlsI	GCNGC	5 cut(s)	143, 292, 331, 490, 583
Bme1390I	CCNGG	2 cut(s)	63, 184
BmiI	GGNNCC	1 cut(s)	74
BmrFI	CCNGG	2 cut(s)	63, 184
BmrI	ACTGGG	1 cut(s)	298
BmsI	GCATC	1 cut(s)	487
BmuI	ACTGGG	1 cut(s)	298
BpiI	GAAGAC	1 cut(s)	47
Bpu10I	CCTNAGC	1 cut(s)	156
BsaHI	GRCGYC	1 cut(s)	144
BsaJI	CCNNGG	3 cut(s)	117, 182, 183
BsaXI	ACNNNNNCTCC	2 cut(s)	250, 280
Bse1I	ACTGG	2 cut(s)	259, 304
Bse3DI	GCAATG	1 cut(s)	392
BseBI	CCWGG	2 cut(s)	63, 184
BseDI	CCNNGG	3 cut(s)	117, 182, 183
BseGI	GGATG	1 cut(s)	412
BseMI	GCAATG	1 cut(s)	392
BseMII	CTCAG	2 cut(s)	147, 492
BseNI	ACTGG	2 cut(s)	259, 304
BseRI	GAGGAG	2 cut(s)	104, 215
BseXI	GCAGC	4 cut(s)	277, 316, 475, 568
BsgI	GTGCAG	1 cut(s)	185
BsiHKAI	GWGCWC	2 cut(s)	96, 268
BslFI	GGGAC	1 cut(s)	368
BsmAI	GTCTC	1 cut(s)	497
BsmFI	GGGAC	1 cut(s)	368
Bsp1286I	GDGCHC	3 cut(s)	96, 183, 268
Bsp143I	GATC	3 cut(s)	163, 241, 559
BspACI	CCGC	2 cut(s)	141, 513
BspCNI	CTCAG	2 cut(s)	148, 493
BspLI	GGNNCC	1 cut(s)	74
BspMAI	CTGCAG	1 cut(s)	586
BspPI	GGATC	1 cut(s)	554
BspQI	GCTCTTC	2 cut(s)	30, 218
BsrDI	GCAATG	1 cut(s)	392
BsrI	ACTGG	2 cut(s)	259, 304
BssECI	CCNNGG	3 cut(s)	117, 182, 183
BssMI	GATC	3 cut(s)	163, 241, 559
BssNI	GRCGYC	1 cut(s)	144
BssT1I	CCWWGG	1 cut(s)	117
Bst2UI	CCWGG	2 cut(s)	63, 184
Bst4CI	ACNGT	1 cut(s)	276
Bst6I	CTCTTC	2 cut(s)	30, 218
BstACI	GRCGYC	1 cut(s)	144
BstAPI	GCANNNNNTGC	2 cut(s)	208, 290
BstC8I	GCNNGC	2 cut(s)	250, 541
BstDEI	CTNAG	2 cut(s)	156, 501
BstF5I	GGATG	1 cut(s)	412
BstH2I	RGCGCY	1 cut(s)	135
BstHHI	GCGC	1 cut(s)	134
BstKTI	GATC	3 cut(s)	166, 244, 562
BstMAI	GTCTC	1 cut(s)	497
BstMBI	GATC	3 cut(s)	163, 241, 559
BstMWI	GCNNNNNNNGC	6 cut(s)	138, 187, 208, 290, 488, 497
BstNI	CCWGG	2 cut(s)	63, 184
BstSCI	CCNGG	2 cut(s)	61, 182
BstSFI	CTRYAG	2 cut(s)	492, 582
BstV1I	GCAGC	4 cut(s)	277, 316, 475, 568
BstV2I	GAAGAC	1 cut(s)	47
BstX2I	RGATCY	1 cut(s)	559
BstYI	RGATCY	1 cut(s)	559
BtgZI	GCGATG	1 cut(s)	136
BtsCI	GGATG	1 cut(s)	412
BtsI	GCAGTG	1 cut(s)	197
BtsIMutI	CAGTG	3 cut(s)	197, 252, 281
Cac8I	GCNNGC	2 cut(s)	250, 541
CaiI	CAGNNNCTG	1 cut(s)	290
CfoI	GCGC	1 cut(s)	134
CseI	GACGC	1 cut(s)	133
CsiI	ACCWGGT	1 cut(s)	61
Csp6I	GTAC	1 cut(s)	258
CviAII	CATG	2 cut(s)	208, 553
CviJI	RGCY	9 cut(s)	22, 40, 94, 181, 190, 248, 290, 469, 543
CviKI_1	RGCY	9 cut(s)	22, 40, 94, 181, 190, 248, 290, 469, 543
CviQI	GTAC	1 cut(s)	258
DdeI	CTNAG	2 cut(s)	156, 501
DpnI	GATC	3 cut(s)	165, 243, 561
DpnII	GATC	3 cut(s)	163, 241, 559
Eam1104I	CTCTTC	2 cut(s)	30, 218
EarI	CTCTTC	2 cut(s)	30, 218
Ecl136II	GAGCTC	1 cut(s)	94
Eco130I	CCWWGG	1 cut(s)	117
Eco24I	GRGCYC	2 cut(s)	96, 183
Eco32I	GATATC	1 cut(s)	604
Eco53kI	GAGCTC	1 cut(s)	94
Eco57I	CTGAAG	1 cut(s)	383
EcoICRI	GAGCTC	1 cut(s)	94
EcoRII	CCWGG	2 cut(s)	61, 182
EcoRV	GATATC	1 cut(s)	604
EcoT14I	CCWWGG	1 cut(s)	117
EcoT38I	GRGCYC	2 cut(s)	96, 183
ErhI	CCWWGG	1 cut(s)	117
FaeI	CATG	2 cut(s)	211, 556
FaiI	YATR	3 cut(s)	14, 209, 554
FaqI	GGGAC	1 cut(s)	368
FatI	CATG	2 cut(s)	207, 552
FblI	GTMKAC	2 cut(s)	123, 147
Fnu4HI	GCNGC	5 cut(s)	142, 291, 330, 489, 582
FokI	GGATG	1 cut(s)	399
FriOI	GRGCYC	2 cut(s)	96, 183
Fsp4HI	GCNGC	5 cut(s)	142, 291, 330, 489, 582
FspBI	CTAG	1 cut(s)	261
GlaI	GCGC	1 cut(s)	133
GluI	GCNGC	5 cut(s)	142, 291, 330, 489, 582
HaeII	RGCGCY	1 cut(s)	135
HgaI	GACGC	1 cut(s)	133
HhaI	GCGC	1 cut(s)	134
Hin1I	GRCGYC	1 cut(s)	144
Hin1II	CATG	2 cut(s)	211, 556
Hin6I	GCGC	1 cut(s)	132
HinP1I	GCGC	1 cut(s)	132
HincII	GTYRAC	1 cut(s)	148
HindII	GTYRAC	1 cut(s)	148
HinfI	GANTC	4 cut(s)	358, 389, 587, 595
HphI	GGTGA	2 cut(s)	91, 401
Hpy166II	GTNNAC	2 cut(s)	124, 148
Hpy188I	TCNGA	1 cut(s)	549
Hpy188III	TCNNGA	2 cut(s)	239, 599
Hpy8I	GTNNAC	2 cut(s)	124, 148
Hpy99I	CGWCG	1 cut(s)	149
HpyCH4III	ACNGT	1 cut(s)	276
HpyCH4IV	ACGT	1 cut(s)	381
HpyCH4V	TGCA	4 cut(s)	202, 279, 425, 584
HpyF10VI	GCNNNNNNNGC	6 cut(s)	138, 187, 208, 290, 488, 497
HpyF3I	CTNAG	2 cut(s)	156, 501
HpySE526I	ACGT	1 cut(s)	381
Hsp92I	GRCGYC	1 cut(s)	144
Hsp92II	CATG	2 cut(s)	211, 556
HspAI	GCGC	1 cut(s)	132
Kzo9I	GATC	3 cut(s)	163, 241, 559
LguI	GCTCTTC	2 cut(s)	30, 218
LmnI	GCTCC	3 cut(s)	91, 187, 271
Lsp1109I	GCAGC	4 cut(s)	277, 316, 475, 568
LweI	GCATC	1 cut(s)	487
MabI	ACCWGGT	1 cut(s)	61
MaeI	CTAG	1 cut(s)	261
MaeII	ACGT	1 cut(s)	381
MaeIII	GTNAC	1 cut(s)	219
MalI	GATC	3 cut(s)	165, 243, 561
MboI	GATC	3 cut(s)	163, 241, 559
MboII	GAAGA	5 cut(s)	17, 47, 47, 205, 501
MflI	RGATCY	1 cut(s)	559
MhlI	GDGCHC	3 cut(s)	96, 183, 268
MlyI	GAGTC	1 cut(s)	383
MnlI	CCTC	7 cut(s)	82, 119, 151, 236, 280, 330, 573
MseI	TTAA	2 cut(s)	324, 610
MspR9I	CCNGG	2 cut(s)	63, 184
MvaI	CCWGG	2 cut(s)	63, 184
MwoI	GCNNNNNNNGC	6 cut(s)	138, 187, 208, 290, 488, 497
NdeII	GATC	3 cut(s)	163, 241, 559
NlaIII	CATG	2 cut(s)	211, 556
NlaIV	GGNNCC	1 cut(s)	74
NmuCI	GTSAC	1 cut(s)	219
PasI	CCCWGGG	1 cut(s)	183
PciSI	GCTCTTC	2 cut(s)	30, 218
PcsI	WCGNNNNNNNCGW	1 cut(s)	159
PfeI	GAWTC	3 cut(s)	358, 587, 595
PkrI	GCNGC	5 cut(s)	143, 292, 331, 490, 583
PleI	GAGTC	1 cut(s)	383
PpsI	GAGTC	1 cut(s)	383
Psp124BI	GAGCTC	1 cut(s)	96
Psp6I	CCWGG	2 cut(s)	61, 182
PspGI	CCWGG	2 cut(s)	61, 182
PspN4I	GGNNCC	1 cut(s)	74
PstI	CTGCAG	1 cut(s)	586
PstNI	CAGNNNCTG	1 cut(s)	290
PsuI	RGATCY	1 cut(s)	559
RsaI	GTAC	1 cut(s)	259
RsaNI	GTAC	1 cut(s)	258
SacI	GAGCTC	1 cut(s)	96
SalI	GTCGAC	1 cut(s)	146
SapI	GCTCTTC	2 cut(s)	30, 218
SaqAI	TTAA	2 cut(s)	324, 610
SatI	GCNGC	5 cut(s)	142, 291, 330, 489, 582
Sau3AI	GATC	3 cut(s)	163, 241, 559
SchI	GAGTC	1 cut(s)	383
ScrFI	CCNGG	2 cut(s)	63, 184
SduI	GDGCHC	3 cut(s)	96, 183, 268
SexAI	ACCWGGT	1 cut(s)	61
SfaNI	GCATC	1 cut(s)	487
SfcI	CTRYAG	2 cut(s)	492, 582
SpeI	ACTAGT	1 cut(s)	260
SsiI	CCGC	2 cut(s)	141, 513
SspMI	CTAG	1 cut(s)	261
SstI	GAGCTC	1 cut(s)	96
StyD4I	CCNGG	2 cut(s)	61, 182
StyI	CCWWGG	1 cut(s)	117
TaaI	ACNGT	1 cut(s)	276
TaiI	ACGT	1 cut(s)	384
TaqI	TCGA	3 cut(s)	147, 162, 435
TauI	GCSGC	1 cut(s)	144
TfiI	GAWTC	3 cut(s)	358, 587, 595
Tru1I	TTAA	2 cut(s)	324, 610
Tru9I	TTAA	2 cut(s)	324, 610
TscAI	CASTG	3 cut(s)	204, 259, 281
TseFI	GTSAC	1 cut(s)	219
TseI	GCWGC	4 cut(s)	290, 329, 488, 581
Tsp45I	GTSAC	1 cut(s)	219
TspDTI	ATGAA	1 cut(s)	395
TspRI	CASTG	3 cut(s)	204, 259, 281
XcmI	CCANNNNNNNNNTGG	1 cut(s)	452
XmiI	GTMKAC	2 cut(s)	123, 147
XspI	CTAG	1 cut(s)	261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.