pycom16g26170

Protein CUP-SHAPED COTYLEDON

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Reverse (-)
28445662 .. 28448910
3249 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g26170.2

Sequence Viewer

Length: 1221 bp
ATGGAAGAAATTATGAGTGAGCTGATGAATGGGAGTGGGGAAGGCGTAAACGAACAAGGTATGCAGCCAGGGTTCCGGTTCCATCCGACGGACGAGGAGCTCATAACCTTTTATCTGGCTTCCAAGGTCTACAATGGCTCCTTCTGCGGCGTACGCATTGCTGAGGTCGACCTTAACCGATGCGAGCCATGGGAGCTCCCAGACGTGGCAAAGATGGGAGATAGAGAGTGGTACTTCTTCAGCTTGAGGGACAGAAAGTACCCAACAGGGATGAGAACCAACAGAGCGACCGGAGCCGGCTACTGGAAGGCCACCGGCAAAGACAGACAAGTCTTCAGTGCGTCCACCGGAGCCCTACTTGGCGTGAAGAAGACCCTTGTCTTCTACAAGGGCAGAGCTCCGAGGGGCCACAAGACCAAGTGGGTCATGCACGAGTACCGTCTCGACGGCCACTTCTCCTCCTACCGCCACGCCTGCAAGGAGGAATGGGTGATATGCCGAATAAATCACAAATCTGGGGACAAGAAAAGCCCACTACTAGTTGATCATGAAGCTGCTGCTTCAATAAATTCAAATTGCAATTACCTGCCTCCATTGCTGGATCCATCTCCAGCATTAGTATCGCAAGAGTCATGCCATGAATTTCAGAATCCAATGCAATTGCAAGTTCTTCCTCCTCCGATTCATCAAGATAATCATGACCCCTTCTTCTTCCCAGCTATAAATGCCATGCAAACCCACCAATTACCCTCTTTTTCCAACTCCCTCCTTTTCAAGTCCCTTTTCGACCAAGATTGCAACAGCAGCAGTTCTACTAGTACTATTCCCAAACAGTGCAAGACTGAGCTGGCCAACTACTTCTCCCGTTTCCAAACACCGGGCAACAGTAATAGCAACAATAATAATAGAACCTGCAACAAATTGCATAACTTGAACTTGGGGGTGGAGCTGGAAAAGAATCATGCTCATCAGTATCAGCCAAACGCCCCCTATCATAATCGTCATCAATACAATGATCCGCTGCCGTTTGATTATTTGGACTACACTACTAGTGTGCTGGGGTTCTCAGCAGCAGAGGCTGCTACTACTACTACTATCACCGCGAGTGCGACTGTTCATGCTCATGATACGTCTCCCTCATTTGCTTTGGACAGGGCCGGCTTTCAGACCATGTTAGATCTTCCTCCCATCAAACGCCCTGGAGAATCTTGCCGACCCTAG

Protein Analysis

407

Amino Acids

45.82

Weight (kDa)

6.8

Isoelectric Point (pI)

39.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013567)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 329
Acc36I ACCTGC 2 cut(s) 594, 920
AccI GTMKAC 2 cut(s) 129, 168
AccII CGCG 1 cut(s) 1103
AciI CCGC 4 cut(s) 147, 466, 1019, 1101
AclWI GGATC 3 cut(s) 596, 609, 1010
AcoI YGGCCR 2 cut(s) 448, 849
AcsI RAATTY 2 cut(s) 568, 641
AcuI CTGAAG 2 cut(s) 223, 319
AfaI GTAC 5 cut(s) 153, 233, 260, 437, 820
AfiI CCNNNNNNNGG 4 cut(s) 88, 205, 303, 877
AgsI TTSAA 4 cut(s) 564, 573, 775, 934
AhlI ACTAGT 3 cut(s) 538, 815, 1049
AjiI CACGTC 1 cut(s) 205
AjnI CCWGG 2 cut(s) 67, 1198
AluBI AGCT 9 cut(s) 22, 100, 196, 243, 398, 554, 719, 847, 949
AluI AGCT 9 cut(s) 22, 100, 196, 243, 398, 554, 719, 847, 949
Alw21I GWGCWC 3 cut(s) 102, 198, 400
Alw26I GTCTC 2 cut(s) 446, 1137
AlwI GGATC 3 cut(s) 596, 609, 1010
AlwNI CAGNNNCTG 1 cut(s) 1079
AoxI GGCC 5 cut(s) 309, 406, 448, 849, 1155
ApeKI GCWGC 7 cut(s) 64, 554, 557, 804, 1021, 1070, 1079
ApoI RAATTY 2 cut(s) 568, 641
AspS9I GGNCC 2 cut(s) 406, 1155
AsuC2I CCSGG 1 cut(s) 879
AsuHPI GGTGA 2 cut(s) 502, 1090
BalI TGGCCA 1 cut(s) 851
BamHI GGATCC 1 cut(s) 601
BanII GRGCYC 4 cut(s) 102, 198, 355, 400
BauI CACGAG 1 cut(s) 431
BbsI GAAGAC 3 cut(s) 325, 373, 377
Bbv12I GWGCWC 3 cut(s) 102, 198, 400
BbvCI CCTCAGC 1 cut(s) 162
BbvI GCAGC 7 cut(s) 76, 541, 544, 816, 1008, 1066, 1082
BccI CCATC 4 cut(s) 90, 208, 613, 1196
BceAI ACGGC 2 cut(s) 463, 1009
BcgI CGANNNNNNTGC 2 cut(s) 603, 637
BciT130I CCWGG 2 cut(s) 69, 1200
BclI TGATCA 1 cut(s) 544
BcnI CCSGG 1 cut(s) 879
BcoDI GTCTC 2 cut(s) 446, 1137
BcuI ACTAGT 3 cut(s) 538, 815, 1049
BfaI CTAG 4 cut(s) 539, 816, 1050, 1219
BfuAI ACCTGC 2 cut(s) 594, 920
BglII AGATCT 1 cut(s) 1177
BisI GCNGC 8 cut(s) 65, 148, 555, 558, 805, 1022, 1071, 1080
BlsI GCNGC 8 cut(s) 66, 149, 556, 559, 806, 1023, 1072, 1081
BmcAI AGTACT 1 cut(s) 820
Bme1390I CCNGG 3 cut(s) 69, 879, 1200
BmgBI CACGTC 1 cut(s) 205
BmgT120I GGNCC 2 cut(s) 406, 1155
BmiI GGNNCC 7 cut(s) 74, 80, 139, 295, 352, 407, 603
BmrFI CCNGG 3 cut(s) 69, 879, 1200
BmsI GCATC 1 cut(s) 170
BoxI GACNNNNGTC 1 cut(s) 377
BpiI GAAGAC 3 cut(s) 325, 373, 377
BpmI CTGGAG 2 cut(s) 594, 1221
Bpu10I CCTNAGC 1 cut(s) 162
BpuEI CTTGAG 1 cut(s) 265
BpuMI CCSGG 1 cut(s) 879
BsaJI CCNNGG 5 cut(s) 68, 123, 188, 401, 1198
BsaWI WCCGGW 3 cut(s) 75, 290, 347
BsaXI ACNNNNNCTCC 6 cut(s) 122, 152, 443, 473, 845, 875
Bsc4I CCNNNNNNNGG 4 cut(s) 88, 205, 303, 877
Bse118I RCCGGY 3 cut(s) 296, 314, 1157
Bse1I ACTGG 1 cut(s) 308
Bse3DI GCAATG 2 cut(s) 156, 593
BseBI CCWGG 2 cut(s) 69, 1200
BseDI CCNNGG 5 cut(s) 68, 123, 188, 401, 1198
BseGI GGATG 2 cut(s) 82, 276
BseLI CCNNNNNNNGG 4 cut(s) 88, 205, 303, 877
BseMI GCAATG 2 cut(s) 156, 593
BseMII CTCAG 3 cut(s) 153, 834, 1080
BseNI ACTGG 1 cut(s) 308
BseRI GAGGAG 3 cut(s) 110, 448, 666
BseXI GCAGC 7 cut(s) 76, 541, 544, 816, 1008, 1066, 1082
BseYI CCCAGC 2 cut(s) 715, 1057
Bsh1236I CGCG 1 cut(s) 1103
Bsh1285I CGRYCG 1 cut(s) 291
BshFI GGCC 5 cut(s) 311, 408, 450, 851, 1157
BsiEI CGRYCG 1 cut(s) 291
BsiHKAI GWGCWC 3 cut(s) 102, 198, 400
BsiSI CCGG 7 cut(s) 76, 291, 297, 315, 348, 878, 1158
BsiWI CGTACG 1 cut(s) 151
BslFI GGGAC 3 cut(s) 263, 533, 763
BslI CCNNNNNNNGG 4 cut(s) 88, 205, 303, 877
BsmAI GTCTC 2 cut(s) 446, 1137
BsmBI CGTCTC 2 cut(s) 446, 1137
BsmFI GGGAC 3 cut(s) 263, 533, 763
BsnI GGCC 5 cut(s) 311, 408, 450, 851, 1157
Bsp1286I GDGCHC 4 cut(s) 102, 198, 355, 400
Bsp143I GATC 4 cut(s) 544, 601, 1015, 1177
Bsp19I CCATGG 1 cut(s) 188
BspACI CCGC 4 cut(s) 147, 466, 1019, 1101
BspANI GGCC 5 cut(s) 311, 408, 450, 851, 1157
BspCNI CTCAG 3 cut(s) 154, 835, 1079
BspFNI CGCG 1 cut(s) 1103
BspHI TCATGA 3 cut(s) 547, 697, 1123
BspLI GGNNCC 7 cut(s) 74, 80, 139, 295, 352, 407, 603
BspMI ACCTGC 2 cut(s) 594, 920
BspPI GGATC 3 cut(s) 596, 609, 1010
BsrDI GCAATG 2 cut(s) 156, 593
BsrFI RCCGGY 3 cut(s) 296, 314, 1157
BsrI ACTGG 1 cut(s) 308
BssAI RCCGGY 3 cut(s) 296, 314, 1157
BssECI CCNNGG 5 cut(s) 68, 123, 188, 401, 1198
BssMI GATC 4 cut(s) 544, 601, 1015, 1177
BssSI CACGAG 1 cut(s) 431
BssT1I CCWWGG 2 cut(s) 123, 188
Bst2BI CACGAG 1 cut(s) 431
Bst2UI CCWGG 2 cut(s) 69, 1200
Bst4CI ACNGT 4 cut(s) 440, 834, 887, 1114
BstAPI GCANNNNNTGC 1 cut(s) 1079
BstC8I GCNNGC 5 cut(s) 185, 298, 475, 849, 1159
BstDEI CTNAG 3 cut(s) 162, 843, 1066
BstDSI CCRYGG 1 cut(s) 188
BstF5I GGATG 2 cut(s) 82, 276
BstFNI CGCG 1 cut(s) 1103
BstKTI GATC 4 cut(s) 547, 604, 1018, 1180
BstMAI GTCTC 2 cut(s) 446, 1137
BstMBI GATC 4 cut(s) 544, 601, 1015, 1177
BstMCI CGRYCG 1 cut(s) 291
BstNI CCWGG 2 cut(s) 69, 1200
BstPAI GACNNNNGTC 1 cut(s) 377
BstSCI CCNGG 3 cut(s) 67, 877, 1198
BstUI CGCG 1 cut(s) 1103
BstV1I GCAGC 7 cut(s) 76, 541, 544, 816, 1008, 1066, 1082
BstV2I GAAGAC 3 cut(s) 325, 373, 377
BstX2I RGATCY 2 cut(s) 601, 1177
BstYI RGATCY 2 cut(s) 601, 1177
BsuRI GGCC 5 cut(s) 311, 408, 450, 851, 1157
BtgI CCRYGG 1 cut(s) 188
BtrI CACGTC 1 cut(s) 205
BtsCI GGATG 2 cut(s) 82, 276
BtsIMutI CAGTG 2 cut(s) 343, 839
BveI ACCTGC 2 cut(s) 594, 920
Cac8I GCNNGC 5 cut(s) 185, 298, 475, 849, 1159
CaiI CAGNNNCTG 1 cut(s) 1079
CciI TCATGA 3 cut(s) 547, 697, 1123
Cfr10I RCCGGY 3 cut(s) 296, 314, 1157
Cfr13I GGNCC 2 cut(s) 406, 1155
CseI GACGC 1 cut(s) 330
Csp6I GTAC 5 cut(s) 152, 232, 259, 436, 819
CviQI GTAC 5 cut(s) 152, 232, 259, 436, 819
DdeI CTNAG 3 cut(s) 162, 843, 1066
DpnI GATC 4 cut(s) 546, 603, 1017, 1179
DpnII GATC 4 cut(s) 544, 601, 1015, 1177
DrdI GACNNNNNNGTC 1 cut(s) 329
DseDI GACNNNNNNGTC 1 cut(s) 329
EaeI YGGCCR 2 cut(s) 448, 849
Ecl136II GAGCTC 3 cut(s) 100, 196, 398
Eco130I CCWWGG 2 cut(s) 123, 188
Eco24I GRGCYC 4 cut(s) 102, 198, 355, 400
Eco53kI GAGCTC 3 cut(s) 100, 196, 398
Eco57I CTGAAG 2 cut(s) 223, 319
EcoICRI GAGCTC 3 cut(s) 100, 196, 398
EcoRII CCWGG 2 cut(s) 67, 1198
EcoT14I CCWWGG 2 cut(s) 123, 188
EcoT38I GRGCYC 4 cut(s) 102, 198, 355, 400
ErhI CCWWGG 2 cut(s) 123, 188
Esp3I CGTCTC 2 cut(s) 446, 1137
FaqI GGGAC 3 cut(s) 263, 533, 763
FbaI TGATCA 1 cut(s) 544
FblI GTMKAC 2 cut(s) 129, 168
Fnu4HI GCNGC 8 cut(s) 65, 148, 555, 558, 805, 1022, 1071, 1080
FokI GGATG 2 cut(s) 69, 283
FriOI GRGCYC 4 cut(s) 102, 198, 355, 400
Fsp4HI GCNGC 8 cut(s) 65, 148, 555, 558, 805, 1022, 1071, 1080
FspBI CTAG 4 cut(s) 539, 816, 1050, 1219
GluI GCNGC 8 cut(s) 65, 148, 555, 558, 805, 1022, 1071, 1080
GsaI CCCAGC 2 cut(s) 719, 1061
GsuI CTGGAG 2 cut(s) 594, 1221
HaeIII GGCC 5 cut(s) 311, 408, 450, 851, 1157
HapII CCGG 7 cut(s) 76, 291, 297, 315, 348, 878, 1158
HgaI GACGC 1 cut(s) 330
HincII GTYRAC 1 cut(s) 169
HindII GTYRAC 1 cut(s) 169
HinfI GANTC 5 cut(s) 629, 649, 682, 958, 1205
HpaII CCGG 7 cut(s) 76, 291, 297, 315, 348, 878, 1158
HphI GGTGA 2 cut(s) 502, 1090
Hpy166II GTNNAC 4 cut(s) 49, 130, 169, 345
Hpy188I TCNGA 5 cut(s) 87, 402, 648, 681, 1167
Hpy188III TCNNGA 5 cut(s) 443, 548, 689, 698, 1124
Hpy8I GTNNAC 4 cut(s) 49, 130, 169, 345
Hpy99I CGWCG 2 cut(s) 91, 449
HpyAV CCTTC 4 cut(s) 35, 151, 301, 715
HpyCH4III ACNGT 4 cut(s) 440, 834, 887, 1114
HpyCH4IV ACGT 2 cut(s) 204, 1130
HpyF3I CTNAG 3 cut(s) 162, 843, 1066
HpySE526I ACGT 2 cut(s) 204, 1130
KroI GCCGGC 2 cut(s) 296, 1157
KroNI GCCGGC 2 cut(s) 298, 1159
Ksp22I TGATCA 1 cut(s) 544
Kzo9I GATC 4 cut(s) 544, 601, 1015, 1177
LmnI GCTCC 8 cut(s) 97, 143, 193, 201, 293, 350, 403, 946
Lsp1109I GCAGC 7 cut(s) 76, 541, 544, 816, 1008, 1066, 1082
LweI GCATC 1 cut(s) 170
MaeI CTAG 4 cut(s) 539, 816, 1050, 1219
MaeII ACGT 2 cut(s) 204, 1130
MalI GATC 4 cut(s) 546, 603, 1017, 1179
MboI GATC 4 cut(s) 544, 601, 1015, 1177
MfeI CAATTG 1 cut(s) 659
MflI RGATCY 2 cut(s) 601, 1177
MhlI GDGCHC 4 cut(s) 102, 198, 355, 400
MlsI TGGCCA 1 cut(s) 851
MluCI AATT 8 cut(s) 9, 568, 574, 580, 641, 659, 743, 920
MluNI TGGCCA 1 cut(s) 851
MlyI GAGTC 1 cut(s) 638
MmeI TCCRAC 2 cut(s) 110, 783
Mox20I TGGCCA 1 cut(s) 851
MroNI GCCGGC 2 cut(s) 296, 1157
MscI TGGCCA 1 cut(s) 851
MseI TTAA 1 cut(s) 174
MslI CAYNNNNRTG 1 cut(s) 1122
Msp20I TGGCCA 1 cut(s) 851
MspA1I CMGCKG 1 cut(s) 1021
MspI CCGG 7 cut(s) 76, 291, 297, 315, 348, 878, 1158
MspR9I CCNGG 3 cut(s) 69, 879, 1200
MunI CAATTG 1 cut(s) 659
MvaI CCWGG 2 cut(s) 69, 1200
MvnI CGCG 1 cut(s) 1103
NaeI GCCGGC 2 cut(s) 298, 1159
NciI CCSGG 1 cut(s) 879
NcoI CCATGG 1 cut(s) 188
NdeII GATC 4 cut(s) 544, 601, 1015, 1177
NgoMIV GCCGGC 2 cut(s) 296, 1157
NlaIV GGNNCC 7 cut(s) 74, 80, 139, 295, 352, 407, 603
PagI TCATGA 3 cut(s) 547, 697, 1123
PdiI GCCGGC 2 cut(s) 298, 1159
PfeI GAWTC 4 cut(s) 649, 682, 958, 1205
Pfl23II CGTACG 1 cut(s) 151
PkrI GCNGC 8 cut(s) 66, 149, 556, 559, 806, 1023, 1072, 1081
PleI GAGTC 1 cut(s) 637
PpsI GAGTC 1 cut(s) 637
PshAI GACNNNNGTC 1 cut(s) 377
Psp124BI GAGCTC 3 cut(s) 102, 198, 400
Psp6I CCWGG 2 cut(s) 67, 1198
PspFI CCCAGC 2 cut(s) 715, 1057
PspGI CCWGG 2 cut(s) 67, 1198
PspLI CGTACG 1 cut(s) 151
PspN4I GGNNCC 7 cut(s) 74, 80, 139, 295, 352, 407, 603
PspPI GGNCC 2 cut(s) 406, 1155
PstNI CAGNNNCTG 1 cut(s) 1079
PsuI RGATCY 2 cut(s) 601, 1177
RsaI GTAC 5 cut(s) 153, 233, 260, 437, 820
RsaNI GTAC 5 cut(s) 152, 232, 259, 436, 819
RseI CAYNNNNRTG 1 cut(s) 1122
SacI GAGCTC 3 cut(s) 102, 198, 400
SalI GTCGAC 1 cut(s) 167
SaqAI TTAA 1 cut(s) 174
SatI GCNGC 8 cut(s) 65, 148, 555, 558, 805, 1022, 1071, 1080
Sau3AI GATC 4 cut(s) 544, 601, 1015, 1177
Sau96I GGNCC 2 cut(s) 406, 1155
ScaI AGTACT 1 cut(s) 820
SchI GAGTC 1 cut(s) 638
ScrFI CCNGG 3 cut(s) 69, 879, 1200
SduI GDGCHC 4 cut(s) 102, 198, 355, 400
SfaNI GCATC 1 cut(s) 170
SmiMI CAYNNNNRTG 1 cut(s) 1122
SmlI CTYRAG 1 cut(s) 244
SmoI CTYRAG 1 cut(s) 244
SpeI ACTAGT 3 cut(s) 538, 815, 1049
Sse9I AATT 8 cut(s) 9, 568, 574, 580, 641, 659, 743, 920
SsiI CCGC 4 cut(s) 147, 466, 1019, 1101
SspMI CTAG 4 cut(s) 539, 816, 1050, 1219
SstI GAGCTC 3 cut(s) 102, 198, 400
StyD4I CCNGG 3 cut(s) 67, 877, 1198
StyI CCWWGG 2 cut(s) 123, 188
TaaI ACNGT 4 cut(s) 440, 834, 887, 1114
TaiI ACGT 2 cut(s) 207, 1133
TaqI TCGA 3 cut(s) 168, 444, 786
TasI AATT 8 cut(s) 9, 568, 574, 580, 641, 659, 743, 920
TatI WGTACW 1 cut(s) 818
TauI GCSGC 1 cut(s) 150
TfiI GAWTC 4 cut(s) 649, 682, 958, 1205
Tru1I TTAA 1 cut(s) 174
Tru9I TTAA 1 cut(s) 174
TscAI CASTG 2 cut(s) 343, 839
TseI GCWGC 7 cut(s) 64, 554, 557, 804, 1021, 1070, 1079
TspDTI ATGAA 5 cut(s) 41, 564, 654, 674, 1106
TspGWI ACGGA 1 cut(s) 104
TspRI CASTG 2 cut(s) 343, 839
XapI RAATTY 2 cut(s) 568, 641
XmiI GTMKAC 2 cut(s) 129, 168
XspI CTAG 4 cut(s) 539, 816, 1050, 1219
ZrmI AGTACT 1 cut(s) 820
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.