Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009638.1

Orthogroup ID

OG0013567

Physical Location & Seq

Genomic Coordinates Reverse (-)

15528 .. 17736

Gene Structure 2209 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009638.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

atggaagaagttatgagtgagctgatgggtagggaagagctgaacgaacaaggtcttccacctggtttcaggttccacccaactgatgaggagctcatcaccttttacctcgcttccaaggtctacaatggcgctttctgcggcgtcgacatcgctgaggtcgatctcaacagatgtgagccctgggagctaccagatgtggcgaagatgggggacagagagtggtacttcttcagcctccgagaccggaagtacccgaccggccttaggaccaaccgagccaccggcgctggctactggaaagccaccggcaaagacaaagaggtttacagtgcctccagtggggcccttcttgggatgaagaagaccctcgtcttctacaagggccgtgccccccgcggccagaagaccaagtgggtcatgcacgagtaccgcctcgacggggacttctcctcctaccgccacacgtgcaaggatgaatgggtgatatgtagaatacacaacaaatctggggacaaaaaaaacccactgcaagctcaagggcaaggggaagggcaacagagtaatttcctgcaacaagttgtggaagctgcttctgcttctgcttcttccaaaactggctgcttgcctccattgctggaatgtcaatctcagacgactcatcagaaccctagttttctgcaaagccctagtttactgcagattcaagaaaacgacttgatgaaaagtcgtaatcaactgtttcaacaaccctcattatcatcatcatcttcatcctcagcagcagcactgcactccatgctcttcaagtcactcctctattcacatcaagatcaagctggcactggtactagtgctcctaaacagtgcaaggcagaggctgctaatctttcccagttccaaaccccacctcttaatgctgctaacttcaactacttgatggaaaagaatcactctcatcatcaaccaaacgtcccagactcattgcttcagtttcatcaccatccccgaaatgcactctctttcgatgacttccattattacaatggtgtgttggggctttctacatctgctactgctgctgtagatgctgagacttcttccgcttccattggtggtttcaacagggcaggctttcagaccatgttagatcctctcatcaaactccctgctgcagaatcttggaatctggatatcgcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009653 GO:0009888 GO:0009889 GO:0009933 GO:0010014 GO:0010199 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032502 GO:0048507 GO:0048532 GO:0048646 GO:0048856 GO:0048859 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0090691 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

400

Amino Acids

44.47

Weight (kDa)

6.4

Isoelectric Point (pI)

39.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013567)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76420
fragaria_vesca	FvH4_5g25960 FvH4_5g25960 FvH4_5g25960
malus_domestica	MD06G1004900.v1.1
prunus_persica	Prupe.5G006200_v2.0.a1
pyrus_communis	pycom06g00440 pycom16g26170
rosa_chinensis	RchiOBHm_Chr7g0216521
rosa_laevigata	RLG00000002564
rosa_multiflora	Rmu_sc0009638.1_g000003 Rmu_sc0009638.1_g000004
rosa_roxburghii	Rroxscaffold_3G00243140
rosa_rugosa	Rorug07G0160700
rosa_samantha	Rh7AG300000 Rh7BG291900 Rh7CG318600
rosa_wichuraiana	Rw7G025510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	123, 147
AccII	CGCG	1 cut(s)	399
AciI	CCGC	6 cut(s)	141, 397, 399, 433, 460, 1104
AclWI	GGATC	1 cut(s)	1145
AcoI	YGGCCR	1 cut(s)	400
AcuI	CTGAAG	2 cut(s)	217, 974
AcvI	CACGTG	1 cut(s)	468
AcyI	GRCGYC	1 cut(s)	144
AfaI	GTAC	4 cut(s)	227, 254, 431, 850
AfiI	CCNNNNNNNGG	4 cut(s)	267, 342, 354, 442
AflIII	ACRYGT	1 cut(s)	465
AgsI	TTSAA	5 cut(s)	707, 746, 808, 931, 1123
AhlI	ACTAGT	1 cut(s)	851
AjnI	CCWGG	2 cut(s)	61, 182
AluBI	AGCT	7 cut(s)	22, 40, 94, 190, 536, 590, 839
AluI	AGCT	7 cut(s)	22, 40, 94, 190, 536, 590, 839
Alw21I	GWGCWC	2 cut(s)	96, 859
Alw26I	GTCTC	2 cut(s)	237, 1088
AlwI	GGATC	1 cut(s)	1145
AlwNI	CAGNNNCTG	1 cut(s)	881
AoxI	GGCC	4 cut(s)	262, 345, 385, 400
ApaI	GGGCCC	1 cut(s)	349
ApeKI	GCWGC	8 cut(s)	590, 621, 782, 785, 881, 920, 1079, 1172
AspLEI	GCGC	2 cut(s)	134, 290
AspS9I	GGNCC	4 cut(s)	270, 345, 346, 385
AsuHPI	GGTGA	3 cut(s)	91, 496, 992
AvaII	GGWCC	1 cut(s)	270
AxyI	CCTNAGG	1 cut(s)	266
BaeGI	GKGCMC	2 cut(s)	349, 394
BanII	GRGCYC	3 cut(s)	96, 183, 349
BauI	CACGAG	1 cut(s)	425
BbrPI	CACGTG	1 cut(s)	468
BbsI	GAAGAC	4 cut(s)	47, 367, 371, 413
Bbv12I	GWGCWC	2 cut(s)	96, 859
BbvCI	CCTCAGC	2 cut(s)	156, 778
BbvI	GCAGC	8 cut(s)	577, 608, 794, 797, 868, 907, 1066, 1159
BccI	CCATC	4 cut(s)	19, 202, 934, 1011
BceAI	ACGGC	1 cut(s)	372
BciT130I	CCWGG	2 cut(s)	63, 184
BcoDI	GTCTC	2 cut(s)	237, 1088
BcuI	ACTAGT	1 cut(s)	851
BfaI	CTAG	3 cut(s)	672, 690, 852
BfmI	CTRYAG	3 cut(s)	698, 1083, 1173
BfoI	RGCGCY	2 cut(s)	135, 291
Bme1390I	CCNGG	2 cut(s)	63, 184
Bme18I	GGWCC	1 cut(s)	270
BmgT120I	GGNCC	4 cut(s)	270, 345, 346, 385
BmiI	GGNNCC	3 cut(s)	74, 346, 347
BmrFI	CCNGG	2 cut(s)	63, 184
BmrI	ACTGGG	1 cut(s)	889
BmsI	GCATC	1 cut(s)	1078
BmuI	ACTGGG	1 cut(s)	889
BoxI	GACNNNNGTC	1 cut(s)	371
BpiI	GAAGAC	4 cut(s)	47, 367, 371, 413
BpmI	CTGGAG	1 cut(s)	322
Bpu10I	CCTNAGC	2 cut(s)	156, 778
BpuEI	CTTGAG	1 cut(s)	522
BsaAI	YACGTR	1 cut(s)	468
BsaHI	GRCGYC	1 cut(s)	144
BsaI	GGTCTC	1 cut(s)	237
BsaJI	CCNNGG	4 cut(s)	117, 182, 183, 397
BsaWI	WCCGGW	1 cut(s)	246
BsaXI	ACNNNNNCTCC	6 cut(s)	320, 350, 437, 467, 841, 871
Bsc4I	CCNNNNNNNGG	4 cut(s)	267, 342, 354, 442
Bse118I	RCCGGY	3 cut(s)	260, 284, 308
Bse1I	ACTGG	5 cut(s)	302, 339, 622, 850, 895
Bse21I	CCTNAGG	1 cut(s)	266
Bse3DI	GCAATG	2 cut(s)	632, 983
BseBI	CCWGG	2 cut(s)	63, 184
BseDI	CCNNGG	4 cut(s)	117, 182, 183, 397
BseGI	GGATG	4 cut(s)	363, 481, 773, 1003
BseLI	CCNNNNNNNGG	4 cut(s)	267, 342, 354, 442
BseMI	GCAATG	2 cut(s)	632, 983
BseMII	CTCAG	4 cut(s)	147, 665, 792, 1083
BseNI	ACTGG	5 cut(s)	302, 339, 622, 850, 895
BseRI	GAGGAG	3 cut(s)	104, 442, 806
BseSI	GKGCMC	2 cut(s)	349, 394
BseXI	GCAGC	8 cut(s)	577, 608, 794, 797, 868, 907, 1066, 1159
BsgI	GTGCAG	1 cut(s)	776
Bsh1236I	CGCG	1 cut(s)	399
Bsh1285I	CGRYCG	1 cut(s)	261
BshFI	GGCC	4 cut(s)	264, 347, 387, 402
BsiEI	CGRYCG	1 cut(s)	261
BsiHKAI	GWGCWC	2 cut(s)	96, 859
BsiSI	CCGG	4 cut(s)	247, 261, 285, 309
BslFI	GGGAC	4 cut(s)	227, 458, 527, 959
BslI	CCNNNNNNNGG	4 cut(s)	267, 342, 354, 442
BsmAI	GTCTC	2 cut(s)	237, 1088
BsmFI	GGGAC	4 cut(s)	227, 458, 527, 959
BsnI	GGCC	4 cut(s)	264, 347, 387, 402
Bso31I	GGTCTC	1 cut(s)	237
Bsp120I	GGGCCC	1 cut(s)	345
Bsp1286I	GDGCHC	5 cut(s)	96, 183, 349, 394, 859
Bsp143I	GATC	3 cut(s)	163, 832, 1150
BspACI	CCGC	6 cut(s)	141, 397, 399, 433, 460, 1104
BspANI	GGCC	4 cut(s)	264, 347, 387, 402
BspCNI	CTCAG	4 cut(s)	148, 664, 791, 1084
BspFNI	CGCG	1 cut(s)	399
BspLI	GGNNCC	3 cut(s)	74, 346, 347
BspMAI	CTGCAG	2 cut(s)	702, 1177
BspPI	GGATC	1 cut(s)	1145
BspQI	GCTCTTC	2 cut(s)	30, 809
BspTNI	GGTCTC	1 cut(s)	237
BsrDI	GCAATG	2 cut(s)	632, 983
BsrFI	RCCGGY	3 cut(s)	260, 284, 308
BsrI	ACTGG	5 cut(s)	302, 339, 622, 850, 895
BssAI	RCCGGY	3 cut(s)	260, 284, 308
BssECI	CCNNGG	4 cut(s)	117, 182, 183, 397
BssMI	GATC	3 cut(s)	163, 832, 1150
BssNI	GRCGYC	1 cut(s)	144
BssSI	CACGAG	1 cut(s)	425
BssT1I	CCWWGG	1 cut(s)	117
Bst2BI	CACGAG	1 cut(s)	425
Bst2UI	CCWGG	2 cut(s)	63, 184
Bst4CI	ACNGT	3 cut(s)	332, 741, 867
Bst6I	CTCTTC	2 cut(s)	30, 809
BstACI	GRCGYC	1 cut(s)	144
BstAPI	GCANNNNNTGC	2 cut(s)	799, 881
BstBAI	YACGTR	1 cut(s)	468
BstC8I	GCNNGC	5 cut(s)	292, 534, 626, 841, 1132
BstDEI	CTNAG	5 cut(s)	156, 266, 651, 778, 1092
BstDSI	CCRYGG	1 cut(s)	397
BstF5I	GGATG	4 cut(s)	363, 481, 773, 1003
BstFNI	CGCG	1 cut(s)	399
BstH2I	RGCGCY	2 cut(s)	135, 291
BstHHI	GCGC	2 cut(s)	134, 290
BstKTI	GATC	3 cut(s)	166, 835, 1153
BstMAI	GTCTC	2 cut(s)	237, 1088
BstMBI	GATC	3 cut(s)	163, 832, 1150
BstMCI	CGRYCG	1 cut(s)	261
BstNI	CCWGG	2 cut(s)	63, 184
BstPAI	GACNNNNGTC	1 cut(s)	371
BstSCI	CCNGG	2 cut(s)	61, 182
BstSFI	CTRYAG	3 cut(s)	698, 1083, 1173
BstSLI	GKGCMC	2 cut(s)	349, 394
BstUI	CGCG	1 cut(s)	399
BstV1I	GCAGC	8 cut(s)	577, 608, 794, 797, 868, 907, 1066, 1159
BstV2I	GAAGAC	4 cut(s)	47, 367, 371, 413
BstX2I	RGATCY	1 cut(s)	1150
BstYI	RGATCY	1 cut(s)	1150
Bsu36I	CCTNAGG	1 cut(s)	266
BsuRI	GGCC	4 cut(s)	264, 347, 387, 402
BtgI	CCRYGG	1 cut(s)	397
BtgZI	GCGATG	1 cut(s)	136
BtsCI	GGATG	4 cut(s)	363, 481, 773, 1003
BtsI	GCAGTG	2 cut(s)	527, 788
BtsIMutI	CAGTG	6 cut(s)	337, 346, 527, 788, 843, 872
Cac8I	GCNNGC	5 cut(s)	292, 534, 626, 841, 1132
CaiI	CAGNNNCTG	1 cut(s)	881
CfoI	GCGC	2 cut(s)	134, 290
Cfr10I	RCCGGY	3 cut(s)	260, 284, 308
Cfr13I	GGNCC	4 cut(s)	270, 345, 346, 385
Cfr42I	CCGCGG	1 cut(s)	400
CseI	GACGC	1 cut(s)	133
CsiI	ACCWGGT	1 cut(s)	61
Csp6I	GTAC	4 cut(s)	226, 253, 430, 849
CviAII	CATG	3 cut(s)	421, 799, 1144
CviQI	GTAC	4 cut(s)	226, 253, 430, 849
DdeI	CTNAG	5 cut(s)	156, 266, 651, 778, 1092
DpnI	GATC	3 cut(s)	165, 834, 1152
DpnII	GATC	3 cut(s)	163, 832, 1150
EaeI	YGGCCR	1 cut(s)	400
Eam1104I	CTCTTC	2 cut(s)	30, 809
EarI	CTCTTC	2 cut(s)	30, 809
Ecl136II	GAGCTC	1 cut(s)	94
Eco130I	CCWWGG	1 cut(s)	117
Eco24I	GRGCYC	3 cut(s)	96, 183, 349
Eco31I	GGTCTC	1 cut(s)	237
Eco32I	GATATC	1 cut(s)	1195
Eco47I	GGWCC	1 cut(s)	270
Eco53kI	GAGCTC	1 cut(s)	94
Eco57I	CTGAAG	2 cut(s)	217, 974
Eco72I	CACGTG	1 cut(s)	468
Eco81I	CCTNAGG	1 cut(s)	266
EcoICRI	GAGCTC	1 cut(s)	94
EcoO109I	RGGNCCY	2 cut(s)	345, 346
EcoRII	CCWGG	2 cut(s)	61, 182
EcoRV	GATATC	1 cut(s)	1195
EcoT14I	CCWWGG	1 cut(s)	117
EcoT38I	GRGCYC	3 cut(s)	96, 183, 349
ErhI	CCWWGG	1 cut(s)	117
FaeI	CATG	3 cut(s)	424, 802, 1147
FaiI	YATR	5 cut(s)	14, 422, 490, 800, 1145
FaqI	GGGAC	4 cut(s)	227, 458, 527, 959
FatI	CATG	3 cut(s)	420, 798, 1143
FauI	CCCGC	1 cut(s)	404
FblI	GTMKAC	2 cut(s)	123, 147
FokI	GGATG	4 cut(s)	370, 488, 760, 990
FriOI	GRGCYC	3 cut(s)	96, 183, 349
FspBI	CTAG	3 cut(s)	672, 690, 852
GlaI	GCGC	2 cut(s)	133, 289
GsuI	CTGGAG	1 cut(s)	322
HaeII	RGCGCY	2 cut(s)	135, 291
HaeIII	GGCC	4 cut(s)	264, 347, 387, 402
HapII	CCGG	4 cut(s)	247, 261, 285, 309
HgaI	GACGC	1 cut(s)	133
HhaI	GCGC	2 cut(s)	134, 290
Hin1I	GRCGYC	1 cut(s)	144
Hin1II	CATG	3 cut(s)	424, 802, 1147
Hin6I	GCGC	2 cut(s)	132, 288
HinP1I	GCGC	2 cut(s)	132, 288
HincII	GTYRAC	1 cut(s)	148
HindII	GTYRAC	1 cut(s)	148
HinfI	GANTC	6 cut(s)	658, 703, 949, 980, 1178, 1186
HpaII	CCGG	4 cut(s)	247, 261, 285, 309
HphI	GGTGA	3 cut(s)	91, 496, 992
Hpy166II	GTNNAC	4 cut(s)	124, 148, 328, 695
Hpy188I	TCNGA	4 cut(s)	242, 654, 666, 1140
Hpy188III	TCNNGA	3 cut(s)	707, 830, 1190
Hpy8I	GTNNAC	4 cut(s)	124, 148, 328, 695
Hpy99I	CGWCG	2 cut(s)	149, 443
HpyAV	CCTTC	2 cut(s)	359, 545
HpyCH4III	ACNGT	3 cut(s)	332, 741, 867
HpyCH4IV	ACGT	2 cut(s)	467, 972
HpyF3I	CTNAG	5 cut(s)	156, 266, 651, 778, 1092
HpySE526I	ACGT	2 cut(s)	467, 972
Hsp92I	GRCGYC	1 cut(s)	144
Hsp92II	CATG	3 cut(s)	424, 802, 1147
HspAI	GCGC	2 cut(s)	132, 288
KspI	CCGCGG	1 cut(s)	400
Kzo9I	GATC	3 cut(s)	163, 832, 1150
LguI	GCTCTTC	2 cut(s)	30, 809
LmnI	GCTCC	3 cut(s)	91, 187, 862
Lsp1109I	GCAGC	8 cut(s)	577, 608, 794, 797, 868, 907, 1066, 1159
LweI	GCATC	1 cut(s)	1078
MabI	ACCWGGT	1 cut(s)	61
MaeI	CTAG	3 cut(s)	672, 690, 852
MaeII	ACGT	2 cut(s)	467, 972
MaeIII	GTNAC	1 cut(s)	810
MalI	GATC	3 cut(s)	165, 834, 1152
MboI	GATC	3 cut(s)	163, 832, 1150
MflI	RGATCY	1 cut(s)	1150
MhlI	GDGCHC	5 cut(s)	96, 183, 349, 394, 859
MluCI	AATT	1 cut(s)	565
MlyI	GAGTC	2 cut(s)	652, 974
MseI	TTAA	2 cut(s)	915, 1201
MspA1I	CMGCKG	1 cut(s)	399
MspI	CCGG	4 cut(s)	247, 261, 285, 309
MspR9I	CCNGG	2 cut(s)	63, 184
MvaI	CCWGG	2 cut(s)	63, 184
MvnI	CGCG	1 cut(s)	399
NdeII	GATC	3 cut(s)	163, 832, 1150
NlaIII	CATG	3 cut(s)	424, 802, 1147
NlaIV	GGNNCC	3 cut(s)	74, 346, 347
NmuCI	GTSAC	1 cut(s)	810
PasI	CCCWGGG	1 cut(s)	183
PciSI	GCTCTTC	2 cut(s)	30, 809
PcsI	WCGNNNNNNNCGW	1 cut(s)	159
PfeI	GAWTC	4 cut(s)	703, 949, 1178, 1186
PleI	GAGTC	2 cut(s)	652, 974
PmaCI	CACGTG	1 cut(s)	468
PmlI	CACGTG	1 cut(s)	468
PpsI	GAGTC	2 cut(s)	652, 974
Ppu21I	YACGTR	1 cut(s)	468
PshAI	GACNNNNGTC	1 cut(s)	371
Psp124BI	GAGCTC	1 cut(s)	96
Psp6I	CCWGG	2 cut(s)	61, 182
PspCI	CACGTG	1 cut(s)	468
PspGI	CCWGG	2 cut(s)	61, 182
PspN4I	GGNNCC	3 cut(s)	74, 346, 347
PspOMI	GGGCCC	1 cut(s)	345
PspPI	GGNCC	4 cut(s)	270, 345, 346, 385
PstI	CTGCAG	2 cut(s)	702, 1177
PstNI	CAGNNNCTG	1 cut(s)	881
PsuI	RGATCY	1 cut(s)	1150
RsaI	GTAC	4 cut(s)	227, 254, 431, 850
RsaNI	GTAC	4 cut(s)	226, 253, 430, 849
SacI	GAGCTC	1 cut(s)	96
SacII	CCGCGG	1 cut(s)	400
SalI	GTCGAC	1 cut(s)	146
SapI	GCTCTTC	2 cut(s)	30, 809
SaqAI	TTAA	2 cut(s)	915, 1201
Sau3AI	GATC	3 cut(s)	163, 832, 1150
Sau96I	GGNCC	4 cut(s)	270, 345, 346, 385
SchI	GAGTC	2 cut(s)	652, 974
ScrFI	CCNGG	2 cut(s)	63, 184
SduI	GDGCHC	5 cut(s)	96, 183, 349, 394, 859
SexAI	ACCWGGT	1 cut(s)	61
SfaNI	GCATC	1 cut(s)	1078
SfcI	CTRYAG	3 cut(s)	698, 1083, 1173
Sfr303I	CCGCGG	1 cut(s)	400
SgrAI	CRCCGGYG	1 cut(s)	284
SgrBI	CCGCGG	1 cut(s)	400
SinI	GGWCC	1 cut(s)	270
SmlI	CTYRAG	1 cut(s)	537
SmoI	CTYRAG	1 cut(s)	537
SpeI	ACTAGT	1 cut(s)	851
Sse9I	AATT	1 cut(s)	565
SsiI	CCGC	6 cut(s)	141, 397, 399, 433, 460, 1104
SspMI	CTAG	3 cut(s)	672, 690, 852
SstI	GAGCTC	1 cut(s)	96
StyD4I	CCNGG	2 cut(s)	61, 182
StyI	CCWWGG	1 cut(s)	117
TaaI	ACNGT	3 cut(s)	332, 741, 867
TaiI	ACGT	2 cut(s)	470, 975
TaqI	TCGA	4 cut(s)	147, 162, 438, 1026
TasI	AATT	1 cut(s)	565
TauI	GCSGC	2 cut(s)	144, 402
TfiI	GAWTC	4 cut(s)	703, 949, 1178, 1186
Tru1I	TTAA	2 cut(s)	915, 1201
Tru9I	TTAA	2 cut(s)	915, 1201
TscAI	CASTG	6 cut(s)	337, 346, 534, 795, 850, 872
TseFI	GTSAC	1 cut(s)	810
TseI	GCWGC	8 cut(s)	590, 621, 782, 785, 881, 920, 1079, 1172
Tsp45I	GTSAC	1 cut(s)	810
TspDTI	ATGAA	5 cut(s)	374, 492, 737, 762, 986
TspRI	CASTG	6 cut(s)	337, 346, 534, 795, 850, 872
VpaK11BI	GGWCC	1 cut(s)	270
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1043
XmiI	GTMKAC	2 cut(s)	123, 147
XspI	CTAG	3 cut(s)	672, 690, 852

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.