Protein CUP-SHAPED COTYLEDON
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G76420 |
| fragaria_vesca | FvH4_5g25960 FvH4_5g25960 FvH4_5g25960 |
| malus_domestica | MD06G1004900.v1.1 |
| prunus_persica | Prupe.5G006200_v2.0.a1 |
| pyrus_communis | pycom06g00440 pycom16g26170 |
| rosa_chinensis | RchiOBHm_Chr7g0216521 |
| rosa_laevigata | RLG00000002564 |
| rosa_multiflora | Rmu_sc0009638.1_g000003 Rmu_sc0009638.1_g000004 |
| rosa_roxburghii | Rroxscaffold_3G00243140 |
| rosa_rugosa | Rorug07G0160700 |
| rosa_samantha | Rh7AG300000 Rh7BG291900 Rh7CG318600 |
| rosa_wichuraiana | Rw7G025510 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1123 |
| AccB1I | GGYRCC | 1 cut(s) | 296 |
| AccI | GTMKAC | 3 cut(s) | 132, 156, 171 |
| AccII | CGCG | 1 cut(s) | 1121 |
| AciI | CCGC | 5 cut(s) | 150, 442, 469, 706, 1119 |
| AclWI | GGATC | 1 cut(s) | 1172 |
| AcoI | YGGCCR | 2 cut(s) | 409, 991 |
| AcsI | RAATTY | 1 cut(s) | 647 |
| AcuI | CTGAAG | 2 cut(s) | 226, 992 |
| AcvI | CACGTG | 1 cut(s) | 477 |
| AcyI | GRCGYC | 2 cut(s) | 153, 297 |
| AfaI | GTAC | 3 cut(s) | 236, 263, 440 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 208, 306, 363 |
| AflIII | ACRYGT | 1 cut(s) | 474 |
| AgsI | TTSAA | 7 cut(s) | 584, 653, 752, 817, 949, 1137, 1150 |
| AjnI | CCWGG | 2 cut(s) | 70, 191 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 859, 891 |
| Alw21I | GWGCWC | 3 cut(s) | 105, 201, 877 |
| Alw26I | GTCTC | 1 cut(s) | 1109 |
| AlwI | GGATC | 1 cut(s) | 1172 |
| AoxI | GGCC | 2 cut(s) | 409, 991 |
| ApeKI | GCWGC | 7 cut(s) | 31, 599, 624, 791, 794, 1091, 1199 |
| ApoI | RAATTY | 1 cut(s) | 647 |
| AspLEI | GCGC | 3 cut(s) | 143, 299, 344 |
| AspS9I | GGNCC | 1 cut(s) | 253 |
| AsuC2I | CCSGG | 1 cut(s) | 251 |
| AsuHPI | GGTGA | 4 cut(s) | 61, 100, 505, 1010 |
| AvaII | GGWCC | 1 cut(s) | 253 |
| BalI | TGGCCA | 2 cut(s) | 411, 993 |
| BanI | GGYRCC | 1 cut(s) | 296 |
| BanII | GRGCYC | 5 cut(s) | 105, 192, 201, 358, 403 |
| BbrPI | CACGTG | 1 cut(s) | 477 |
| BbsI | GAAGAC | 5 cut(s) | 56, 376, 380, 422, 1119 |
| Bbv12I | GWGCWC | 3 cut(s) | 105, 201, 877 |
| BbvCI | CCTCAGC | 1 cut(s) | 787 |
| BbvI | GCAGC | 7 cut(s) | 18, 586, 611, 803, 806, 1078, 1186 |
| BccI | CCATC | 5 cut(s) | 7, 211, 675, 952, 1029 |
| BceAI | ACGGC | 1 cut(s) | 466 |
| BciT130I | CCWGG | 2 cut(s) | 72, 193 |
| BcnI | CCSGG | 1 cut(s) | 251 |
| BcoDI | GTCTC | 1 cut(s) | 1109 |
| BfaI | CTAG | 2 cut(s) | 678, 696 |
| BfmI | CTRYAG | 4 cut(s) | 625, 800, 1104, 1200 |
| BfoI | RGCGCY | 3 cut(s) | 144, 300, 345 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 450 |
| BisI | GCNGC | 8 cut(s) | 32, 151, 600, 625, 792, 795, 1092, 1200 |
| BlsI | GCNGC | 8 cut(s) | 33, 152, 601, 626, 793, 796, 1093, 1201 |
| Bme1390I | CCNGG | 3 cut(s) | 72, 193, 251 |
| Bme18I | GGWCC | 1 cut(s) | 253 |
| BmgT120I | GGNCC | 1 cut(s) | 253 |
| BmiI | GGNNCC | 4 cut(s) | 83, 254, 298, 355 |
| BmrFI | CCNGG | 3 cut(s) | 72, 193, 251 |
| BmsI | GCATC | 3 cut(s) | 173, 699, 1099 |
| BoxI | GACNNNNGTC | 1 cut(s) | 380 |
| BpiI | GAAGAC | 5 cut(s) | 56, 376, 380, 422, 1119 |
| Bpu10I | CCTNAGC | 1 cut(s) | 787 |
| BpuEI | CTTGAG | 2 cut(s) | 331, 531 |
| BpuMI | CCSGG | 1 cut(s) | 251 |
| BsaAI | YACGTR | 1 cut(s) | 477 |
| BsaHI | GRCGYC | 2 cut(s) | 153, 297 |
| BsaI | GGTCTC | 1 cut(s) | 1109 |
| BsaJI | CCNNGG | 6 cut(s) | 126, 165, 191, 192, 361, 406 |
| BsaWI | WCCGGW | 2 cut(s) | 255, 269 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 446, 476, 859, 889 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 208, 306, 363 |
| Bse118I | RCCGGY | 3 cut(s) | 293, 299, 317 |
| Bse1I | ACTGG | 5 cut(s) | 311, 625, 862, 868, 874 |
| Bse3DI | GCAATG | 1 cut(s) | 638 |
| BseBI | CCWGG | 2 cut(s) | 72, 193 |
| BseDI | CCNNGG | 6 cut(s) | 126, 165, 191, 192, 361, 406 |
| BseGI | GGATG | 5 cut(s) | 372, 490, 714, 782, 1021 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 208, 306, 363 |
| BseMI | GCAATG | 1 cut(s) | 638 |
| BseMII | CTCAG | 4 cut(s) | 266, 671, 801, 1104 |
| BseNI | ACTGG | 5 cut(s) | 311, 625, 862, 868, 874 |
| BseRI | GAGGAG | 2 cut(s) | 113, 451 |
| BseXI | GCAGC | 7 cut(s) | 18, 586, 611, 803, 806, 1078, 1186 |
| BseYI | CCCAGC | 2 cut(s) | 34, 1195 |
| BsgI | GTGCAG | 1 cut(s) | 909 |
| Bsh1236I | CGCG | 1 cut(s) | 1121 |
| BshFI | GGCC | 2 cut(s) | 411, 993 |
| BshNI | GGYRCC | 1 cut(s) | 296 |
| BsiHKAI | GWGCWC | 3 cut(s) | 105, 201, 877 |
| BsiSI | CCGG | 6 cut(s) | 250, 256, 270, 294, 300, 318 |
| BslFI | GGGAC | 3 cut(s) | 236, 266, 536 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 208, 306, 363 |
| BsmAI | GTCTC | 1 cut(s) | 1109 |
| BsmFI | GGGAC | 3 cut(s) | 236, 266, 536 |
| BsnI | GGCC | 2 cut(s) | 411, 993 |
| Bso31I | GGTCTC | 1 cut(s) | 1109 |
| Bsp1286I | GDGCHC | 6 cut(s) | 105, 192, 201, 358, 403, 877 |
| Bsp143I | GATC | 2 cut(s) | 841, 1177 |
| BspACI | CCGC | 5 cut(s) | 150, 442, 469, 706, 1119 |
| BspANI | GGCC | 2 cut(s) | 411, 993 |
| BspCNI | CTCAG | 4 cut(s) | 267, 670, 800, 1105 |
| BspFNI | CGCG | 1 cut(s) | 1121 |
| BspLI | GGNNCC | 4 cut(s) | 83, 254, 298, 355 |
| BspMAI | CTGCAG | 3 cut(s) | 629, 804, 1204 |
| BspPI | GGATC | 1 cut(s) | 1172 |
| BspQI | GCTCTTC | 1 cut(s) | 818 |
| BspT107I | GGYRCC | 1 cut(s) | 296 |
| BspTNI | GGTCTC | 1 cut(s) | 1109 |
| BsrDI | GCAATG | 1 cut(s) | 638 |
| BsrFI | RCCGGY | 3 cut(s) | 293, 299, 317 |
| BsrI | ACTGG | 5 cut(s) | 311, 625, 862, 868, 874 |
| BssAI | RCCGGY | 3 cut(s) | 293, 299, 317 |
| BssECI | CCNNGG | 6 cut(s) | 126, 165, 191, 192, 361, 406 |
| BssMI | GATC | 2 cut(s) | 841, 1177 |
| BssNI | GRCGYC | 2 cut(s) | 153, 297 |
| BssT1I | CCWWGG | 2 cut(s) | 126, 361 |
| Bst2UI | CCWGG | 2 cut(s) | 72, 193 |
| Bst4CI | ACNGT | 5 cut(s) | 747, 759, 885, 1038, 1142 |
| Bst6I | CTCTTC | 2 cut(s) | 39, 818 |
| BstACI | GRCGYC | 2 cut(s) | 153, 297 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 808 |
| BstBAI | YACGTR | 1 cut(s) | 477 |
| BstC8I | GCNNGC | 4 cut(s) | 188, 543, 850, 1159 |
| BstDEI | CTNAG | 4 cut(s) | 275, 657, 787, 1113 |
| BstDSI | CCRYGG | 1 cut(s) | 406 |
| BstF5I | GGATG | 5 cut(s) | 372, 490, 714, 782, 1021 |
| BstFNI | CGCG | 1 cut(s) | 1121 |
| BstH2I | RGCGCY | 3 cut(s) | 144, 300, 345 |
| BstHHI | GCGC | 3 cut(s) | 143, 299, 344 |
| BstKTI | GATC | 2 cut(s) | 844, 1180 |
| BstMAI | GTCTC | 1 cut(s) | 1109 |
| BstMBI | GATC | 2 cut(s) | 841, 1177 |
| BstNI | CCWGG | 2 cut(s) | 72, 193 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 380 |
| BstSCI | CCNGG | 3 cut(s) | 70, 191, 249 |
| BstSFI | CTRYAG | 4 cut(s) | 625, 800, 1104, 1200 |
| BstUI | CGCG | 1 cut(s) | 1121 |
| BstV1I | GCAGC | 7 cut(s) | 18, 586, 611, 803, 806, 1078, 1186 |
| BstV2I | GAAGAC | 5 cut(s) | 56, 376, 380, 422, 1119 |
| BstX2I | RGATCY | 1 cut(s) | 1177 |
| BstYI | RGATCY | 1 cut(s) | 1177 |
| BsuRI | GGCC | 2 cut(s) | 411, 993 |
| BtgI | CCRYGG | 1 cut(s) | 406 |
| BtgZI | GCGATG | 1 cut(s) | 145 |
| BtsCI | GGATG | 5 cut(s) | 372, 490, 714, 782, 1021 |
| BtsIMutI | CAGTG | 1 cut(s) | 1034 |
| Cac8I | GCNNGC | 4 cut(s) | 188, 543, 850, 1159 |
| CfoI | GCGC | 3 cut(s) | 143, 299, 344 |
| Cfr10I | RCCGGY | 3 cut(s) | 293, 299, 317 |
| Cfr13I | GGNCC | 1 cut(s) | 253 |
| CseI | GACGC | 2 cut(s) | 142, 1110 |
| CsiI | ACCWGGT | 1 cut(s) | 70 |
| Csp6I | GTAC | 3 cut(s) | 235, 262, 439 |
| CviAII | CATG | 6 cut(s) | 430, 434, 808, 977, 1171, 1212 |
| CviQI | GTAC | 3 cut(s) | 235, 262, 439 |
| DdeI | CTNAG | 4 cut(s) | 275, 657, 787, 1113 |
| DinI | GGCGCC | 1 cut(s) | 298 |
| DpnI | GATC | 2 cut(s) | 843, 1179 |
| DpnII | GATC | 2 cut(s) | 841, 1177 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1123 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1123 |
| EaeI | YGGCCR | 2 cut(s) | 409, 991 |
| Eam1104I | CTCTTC | 2 cut(s) | 39, 818 |
| EarI | CTCTTC | 2 cut(s) | 39, 818 |
| Ecl136II | GAGCTC | 2 cut(s) | 103, 199 |
| Eco130I | CCWWGG | 2 cut(s) | 126, 361 |
| Eco24I | GRGCYC | 5 cut(s) | 105, 192, 201, 358, 403 |
| Eco31I | GGTCTC | 1 cut(s) | 1109 |
| Eco32I | GATATC | 1 cut(s) | 1225 |
| Eco47I | GGWCC | 1 cut(s) | 253 |
| Eco53kI | GAGCTC | 2 cut(s) | 103, 199 |
| Eco57I | CTGAAG | 2 cut(s) | 226, 992 |
| Eco72I | CACGTG | 1 cut(s) | 477 |
| EcoICRI | GAGCTC | 2 cut(s) | 103, 199 |
| EcoRII | CCWGG | 2 cut(s) | 70, 191 |
| EcoRV | GATATC | 1 cut(s) | 1225 |
| EcoT14I | CCWWGG | 2 cut(s) | 126, 361 |
| EcoT22I | ATGCAT | 1 cut(s) | 435 |
| EcoT38I | GRGCYC | 5 cut(s) | 105, 192, 201, 358, 403 |
| EgeI | GGCGCC | 1 cut(s) | 298 |
| EheI | GGCGCC | 1 cut(s) | 298 |
| ErhI | CCWWGG | 2 cut(s) | 126, 361 |
| FaeI | CATG | 6 cut(s) | 433, 437, 811, 980, 1174, 1215 |
| FaiI | YATR | 8 cut(s) | 431, 435, 499, 510, 809, 978, 1172, 1213 |
| FaqI | GGGAC | 3 cut(s) | 236, 266, 536 |
| FatI | CATG | 6 cut(s) | 429, 433, 807, 976, 1170, 1211 |
| FblI | GTMKAC | 3 cut(s) | 132, 156, 171 |
| Fnu4HI | GCNGC | 8 cut(s) | 32, 151, 600, 625, 792, 795, 1092, 1200 |
| FokI | GGATG | 5 cut(s) | 379, 497, 721, 769, 1008 |
| FriOI | GRGCYC | 5 cut(s) | 105, 192, 201, 358, 403 |
| Fsp4HI | GCNGC | 8 cut(s) | 32, 151, 600, 625, 792, 795, 1092, 1200 |
| FspBI | CTAG | 2 cut(s) | 678, 696 |
| GlaI | GCGC | 3 cut(s) | 142, 298, 343 |
| GluI | GCNGC | 8 cut(s) | 32, 151, 600, 625, 792, 795, 1092, 1200 |
| GsaI | CCCAGC | 2 cut(s) | 38, 1199 |
| HaeII | RGCGCY | 3 cut(s) | 144, 300, 345 |
| HaeIII | GGCC | 2 cut(s) | 411, 993 |
| HapII | CCGG | 6 cut(s) | 250, 256, 270, 294, 300, 318 |
| HgaI | GACGC | 2 cut(s) | 142, 1110 |
| HhaI | GCGC | 3 cut(s) | 143, 299, 344 |
| Hin1I | GRCGYC | 2 cut(s) | 153, 297 |
| Hin1II | CATG | 6 cut(s) | 433, 437, 811, 980, 1174, 1215 |
| Hin6I | GCGC | 3 cut(s) | 141, 297, 342 |
| HinP1I | GCGC | 3 cut(s) | 141, 297, 342 |
| HincII | GTYRAC | 2 cut(s) | 157, 172 |
| HindII | GTYRAC | 2 cut(s) | 157, 172 |
| HinfI | GANTC | 4 cut(s) | 967, 998, 1205, 1216 |
| HpaII | CCGG | 6 cut(s) | 250, 256, 270, 294, 300, 318 |
| HphI | GGTGA | 4 cut(s) | 61, 100, 505, 1010 |
| Hpy166II | GTNNAC | 6 cut(s) | 52, 133, 157, 172, 337, 701 |
| Hpy188I | TCNGA | 3 cut(s) | 660, 672, 1167 |
| Hpy188III | TCNNGA | 3 cut(s) | 615, 839, 1220 |
| Hpy8I | GTNNAC | 6 cut(s) | 52, 133, 157, 172, 337, 701 |
| Hpy99I | CGWCG | 7 cut(s) | 158, 452, 763, 766, 769, 772, 1126 |
| HpyAV | CCTTC | 2 cut(s) | 554, 832 |
| HpyCH4III | ACNGT | 5 cut(s) | 747, 759, 885, 1038, 1142 |
| HpyCH4IV | ACGT | 1 cut(s) | 476 |
| HpyF3I | CTNAG | 4 cut(s) | 275, 657, 787, 1113 |
| HpySE526I | ACGT | 1 cut(s) | 476 |
| Hsp92I | GRCGYC | 2 cut(s) | 153, 297 |
| Hsp92II | CATG | 6 cut(s) | 433, 437, 811, 980, 1174, 1215 |
| HspAI | GCGC | 3 cut(s) | 141, 297, 342 |
| KasI | GGCGCC | 1 cut(s) | 296 |
| Kzo9I | GATC | 2 cut(s) | 841, 1177 |
| LguI | GCTCTTC | 1 cut(s) | 818 |
| LmnI | GCTCC | 5 cut(s) | 100, 196, 204, 353, 880 |
| Lsp1109I | GCAGC | 7 cut(s) | 18, 586, 611, 803, 806, 1078, 1186 |
| LweI | GCATC | 3 cut(s) | 173, 699, 1099 |
| MabI | ACCWGGT | 1 cut(s) | 70 |
| MaeI | CTAG | 2 cut(s) | 678, 696 |
| MaeII | ACGT | 1 cut(s) | 476 |
| MaeIII | GTNAC | 1 cut(s) | 302 |
| MalI | GATC | 2 cut(s) | 843, 1179 |
| MboI | GATC | 2 cut(s) | 841, 1177 |
| MflI | RGATCY | 1 cut(s) | 1177 |
| MhlI | GDGCHC | 6 cut(s) | 105, 192, 201, 358, 403, 877 |
| MlsI | TGGCCA | 2 cut(s) | 411, 993 |
| MluCI | AATT | 2 cut(s) | 574, 647 |
| MluNI | TGGCCA | 2 cut(s) | 411, 993 |
| Mly113I | GGCGCC | 1 cut(s) | 297 |
| MlyI | GAGTC | 1 cut(s) | 992 |
| Mox20I | TGGCCA | 2 cut(s) | 411, 993 |
| Mph1103I | ATGCAT | 1 cut(s) | 435 |
| MscI | TGGCCA | 2 cut(s) | 411, 993 |
| MseI | TTAA | 1 cut(s) | 933 |
| MslI | CAYNNNNRTG | 1 cut(s) | 975 |
| Msp20I | TGGCCA | 2 cut(s) | 411, 993 |
| MspA1I | CMGCKG | 1 cut(s) | 1199 |
| MspI | CCGG | 6 cut(s) | 250, 256, 270, 294, 300, 318 |
| MspR9I | CCNGG | 3 cut(s) | 72, 193, 251 |
| MvaI | CCWGG | 2 cut(s) | 72, 193 |
| MvnI | CGCG | 1 cut(s) | 1121 |
| NarI | GGCGCC | 1 cut(s) | 297 |
| NciI | CCSGG | 1 cut(s) | 251 |
| NdeII | GATC | 2 cut(s) | 841, 1177 |
| NlaIII | CATG | 6 cut(s) | 433, 437, 811, 980, 1174, 1215 |
| NlaIV | GGNNCC | 4 cut(s) | 83, 254, 298, 355 |
| NmeAIII | GCCGAG | 1 cut(s) | 190 |
| NsiI | ATGCAT | 1 cut(s) | 435 |
| PasI | CCCWGGG | 1 cut(s) | 192 |
| PciSI | GCTCTTC | 1 cut(s) | 818 |
| PcsI | WCGNNNNNNNCGW | 4 cut(s) | 162, 168, 403, 767 |
| PfeI | GAWTC | 3 cut(s) | 967, 1205, 1216 |
| PflFI | GACNNNGTC | 1 cut(s) | 1120 |
| PfoI | TCCNGGA | 1 cut(s) | 249 |
| PkrI | GCNGC | 8 cut(s) | 33, 152, 601, 626, 793, 796, 1093, 1201 |
| PleI | GAGTC | 1 cut(s) | 992 |
| PluTI | GGCGCC | 1 cut(s) | 300 |
| PmaCI | CACGTG | 1 cut(s) | 477 |
| PmlI | CACGTG | 1 cut(s) | 477 |
| PpsI | GAGTC | 1 cut(s) | 992 |
| Ppu21I | YACGTR | 1 cut(s) | 477 |
| PshAI | GACNNNNGTC | 1 cut(s) | 380 |
| Psp124BI | GAGCTC | 2 cut(s) | 105, 201 |
| Psp6I | CCWGG | 2 cut(s) | 70, 191 |
| PspCI | CACGTG | 1 cut(s) | 477 |
| PspFI | CCCAGC | 2 cut(s) | 34, 1195 |
| PspGI | CCWGG | 2 cut(s) | 70, 191 |
| PspN4I | GGNNCC | 4 cut(s) | 83, 254, 298, 355 |
| PspPI | GGNCC | 1 cut(s) | 253 |
| PstI | CTGCAG | 3 cut(s) | 629, 804, 1204 |
| PsuI | RGATCY | 1 cut(s) | 1177 |
| PsyI | GACNNNGTC | 1 cut(s) | 1120 |
| PvuII | CAGCTG | 1 cut(s) | 1199 |
| RsaI | GTAC | 3 cut(s) | 236, 263, 440 |
| RsaNI | GTAC | 3 cut(s) | 235, 262, 439 |
| RseI | CAYNNNNRTG | 1 cut(s) | 975 |
| SacI | GAGCTC | 2 cut(s) | 105, 201 |
| SalI | GTCGAC | 2 cut(s) | 155, 170 |
| SapI | GCTCTTC | 1 cut(s) | 818 |
| SaqAI | TTAA | 1 cut(s) | 933 |
| SatI | GCNGC | 8 cut(s) | 32, 151, 600, 625, 792, 795, 1092, 1200 |
| Sau3AI | GATC | 2 cut(s) | 841, 1177 |
| Sau96I | GGNCC | 1 cut(s) | 253 |
| SchI | GAGTC | 1 cut(s) | 992 |
| ScrFI | CCNGG | 3 cut(s) | 72, 193, 251 |
| SduI | GDGCHC | 6 cut(s) | 105, 192, 201, 358, 403, 877 |
| SexAI | ACCWGGT | 1 cut(s) | 70 |
| SfaNI | GCATC | 3 cut(s) | 173, 699, 1099 |
| SfcI | CTRYAG | 4 cut(s) | 625, 800, 1104, 1200 |
| SfoI | GGCGCC | 1 cut(s) | 298 |
| SgrAI | CRCCGGYG | 1 cut(s) | 293 |
| SinI | GGWCC | 1 cut(s) | 253 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 975 |
| SmlI | CTYRAG | 2 cut(s) | 346, 546 |
| SmoI | CTYRAG | 2 cut(s) | 346, 546 |
| Sse9I | AATT | 2 cut(s) | 574, 647 |
| SsiI | CCGC | 5 cut(s) | 150, 442, 469, 706, 1119 |
| SspDI | GGCGCC | 1 cut(s) | 296 |
| SspMI | CTAG | 2 cut(s) | 678, 696 |
| SstI | GAGCTC | 2 cut(s) | 105, 201 |
| StyD4I | CCNGG | 3 cut(s) | 70, 191, 249 |
| StyI | CCWWGG | 2 cut(s) | 126, 361 |
| TaaI | ACNGT | 5 cut(s) | 747, 759, 885, 1038, 1142 |
| TaiI | ACGT | 1 cut(s) | 479 |
| TaqI | TCGA | 4 cut(s) | 156, 171, 397, 447 |
| TasI | AATT | 2 cut(s) | 574, 647 |
| TauI | GCSGC | 1 cut(s) | 153 |
| TfiI | GAWTC | 3 cut(s) | 967, 1205, 1216 |
| Tru1I | TTAA | 1 cut(s) | 933 |
| Tru9I | TTAA | 1 cut(s) | 933 |
| TscAI | CASTG | 1 cut(s) | 1041 |
| TseI | GCWGC | 7 cut(s) | 31, 599, 624, 791, 794, 1091, 1199 |
| TspDTI | ATGAA | 4 cut(s) | 383, 501, 743, 771 |
| TspRI | CASTG | 1 cut(s) | 1041 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1120 |
| VpaK11BI | GGWCC | 1 cut(s) | 253 |
| XapI | RAATTY | 1 cut(s) | 647 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1061 |
| XmiI | GTMKAC | 3 cut(s) | 132, 156, 171 |
| XspI | CTAG | 2 cut(s) | 678, 696 |
| Zsp2I | ATGCAT | 1 cut(s) | 435 |