squamosa
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G20980 AT1G76580 AT1G76580 AT1G76580 |
| fragaria_vesca | FvH4_5g26510 FvH4_5g26510 FvH4_5g26510 FvH4_5g26510 |
| malus_domestica | MD00G1031600.v1.1 MD06G1001500.v1.1 |
| prunus_persica | Prupe.5G002300_v2.0.a1 |
| pyrus_communis | pycom06g00160 pycom16g26290 |
| rosa_chinensis | RchiOBHm_Chr7g0217411 |
| rosa_laevigata | RLG00000002479 |
| rosa_multiflora | Rmu_sc0000145.1_g000013 |
| rosa_roxburghii | Rroxscaffold_3G00242100 |
| rosa_rugosa | Rorug07G0169000 |
| rosa_samantha | Rh7AG308600 Rh7BG299300 Rh7CG328000 Rh7DG307900 |
| rosa_wichuraiana | Rw7G026170 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 1939 |
| Acc36I | ACCTGC | 1 cut(s) | 468 |
| AccI | GTMKAC | 1 cut(s) | 1186 |
| AccII | CGCG | 5 cut(s) | 66, 1122, 1778, 1958, 2469 |
| AccIII | TCCGGA | 1 cut(s) | 823 |
| AciI | CCGC | 5 cut(s) | 312, 315, 550, 1122, 2957 |
| AclWI | GGATC | 5 cut(s) | 304, 1532, 2503, 2639, 2819 |
| AcsI | RAATTY | 7 cut(s) | 804, 1690, 1730, 1797, 1828, 2321, 2398 |
| AcuI | CTGAAG | 2 cut(s) | 719, 3013 |
| AfaI | GTAC | 2 cut(s) | 78, 1342 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 308, 1061, 1243, 1350 |
| AflIII | ACRYGT | 2 cut(s) | 1956, 2870 |
| AhlI | ACTAGT | 1 cut(s) | 1337 |
| AjiI | CACGTC | 2 cut(s) | 2176, 2918 |
| AjnI | CCWGG | 6 cut(s) | 812, 1310, 1349, 1624, 2376, 2569 |
| AleI | CACNNNNGTG | 2 cut(s) | 257, 2750 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2414, 2446 |
| Alw21I | GWGCWC | 2 cut(s) | 673, 1377 |
| Alw26I | GTCTC | 5 cut(s) | 189, 708, 1921, 2721, 2830 |
| Alw44I | GTGCAC | 1 cut(s) | 669 |
| AlwI | GGATC | 5 cut(s) | 304, 1532, 2503, 2639, 2819 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1667, 2461 |
| Aor13HI | TCCGGA | 1 cut(s) | 823 |
| AoxI | GGCC | 3 cut(s) | 936, 1622, 2824 |
| ApaLI | GTGCAC | 1 cut(s) | 669 |
| ApeKI | GCWGC | 4 cut(s) | 26, 899, 2597, 2717 |
| ApoI | RAATTY | 7 cut(s) | 804, 1690, 1730, 1797, 1828, 2321, 2398 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 387, 419, 1345, 1377 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 2160, 2226 |
| AspLEI | GCGC | 4 cut(s) | 1019, 1503, 1940, 2471 |
| AspS9I | GGNCC | 3 cut(s) | 14, 1353, 2567 |
| AsuC2I | CCSGG | 3 cut(s) | 303, 708, 2695 |
| AsuHPI | GGTGA | 6 cut(s) | 17, 1153, 1161, 1245, 1886, 2105 |
| AvaII | GGWCC | 3 cut(s) | 14, 1353, 2567 |
| BaeGI | GKGCMC | 1 cut(s) | 673 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1324, 1357 |
| BanII | GRGCYC | 1 cut(s) | 1377 |
| BbsI | GAAGAC | 1 cut(s) | 400 |
| Bbv12I | GWGCWC | 2 cut(s) | 673, 1377 |
| BbvI | GCAGC | 4 cut(s) | 13, 886, 2584, 2704 |
| BccI | CCATC | 9 cut(s) | 140, 530, 880, 886, 1108, 1264, 1575, 1606, 2380 |
| BceAI | ACGGC | 1 cut(s) | 1840 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 874, 908, 1756, 1790 |
| BciT130I | CCWGG | 6 cut(s) | 814, 1312, 1351, 1626, 2378, 2571 |
| BcnI | CCSGG | 3 cut(s) | 303, 708, 2695 |
| BcoDI | GTCTC | 5 cut(s) | 189, 708, 1921, 2721, 2830 |
| BcuI | ACTAGT | 1 cut(s) | 1337 |
| BfmI | CTRYAG | 1 cut(s) | 165 |
| BfoI | RGCGCY | 1 cut(s) | 1020 |
| BfuAI | ACCTGC | 1 cut(s) | 468 |
| BglII | AGATCT | 3 cut(s) | 1572, 1709, 2858 |
| BisI | GCNGC | 5 cut(s) | 27, 313, 900, 2598, 2718 |
| BlsI | GCNGC | 5 cut(s) | 28, 314, 901, 2599, 2719 |
| Bme1390I | CCNGG | 9 cut(s) | 303, 708, 814, 1312, 1351, 1626, 2378, 2571, 2695 |
| Bme18I | GGWCC | 3 cut(s) | 14, 1353, 2567 |
| BmgBI | CACGTC | 2 cut(s) | 2176, 2918 |
| BmgT120I | GGNCC | 3 cut(s) | 14, 1353, 2567 |
| BmrFI | CCNGG | 9 cut(s) | 303, 708, 814, 1312, 1351, 1626, 2378, 2571, 2695 |
| BmsI | GCATC | 9 cut(s) | 441, 562, 920, 1208, 1394, 1441, 2620, 2677, 2940 |
| BpiI | GAAGAC | 1 cut(s) | 400 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 171, 203, 818, 850, 1132, 1164 |
| BpmI | CTGGAG | 4 cut(s) | 173, 620, 915, 1251 |
| Bpu10I | CCTNAGC | 2 cut(s) | 378, 1494 |
| BpuEI | CTTGAG | 2 cut(s) | 939, 1703 |
| BpuMI | CCSGG | 3 cut(s) | 303, 708, 2695 |
| Bsa29I | ATCGAT | 1 cut(s) | 2814 |
| BsaBI | GATNNNNATC | 2 cut(s) | 219, 1255 |
| BsaI | GGTCTC | 1 cut(s) | 708 |
| BsaJI | CCNNGG | 3 cut(s) | 111, 1349, 2748 |
| BsaWI | WCCGGW | 1 cut(s) | 823 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 308, 1061, 1243, 1350 |
| Bse118I | RCCGGY | 2 cut(s) | 256, 1871 |
| Bse1I | ACTGG | 6 cut(s) | 92, 1026, 1268, 1344, 1356, 1978 |
| Bse3DI | GCAATG | 4 cut(s) | 988, 1559, 1662, 2727 |
| Bse8I | GATNNNNATC | 2 cut(s) | 219, 1255 |
| BseAI | TCCGGA | 1 cut(s) | 823 |
| BseBI | CCWGG | 6 cut(s) | 814, 1312, 1351, 1626, 2378, 2571 |
| BseCI | ATCGAT | 1 cut(s) | 2814 |
| BseDI | CCNNGG | 3 cut(s) | 111, 1349, 2748 |
| BseGI | GGATG | 7 cut(s) | 46, 121, 151, 541, 643, 2164, 2276 |
| BseJI | GATNNNNATC | 2 cut(s) | 219, 1255 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 308, 1061, 1243, 1350 |
| BseMI | GCAATG | 4 cut(s) | 988, 1559, 1662, 2727 |
| BseMII | CTCAG | 8 cut(s) | 116, 486, 599, 1118, 1508, 1796, 2819, 2859 |
| BseNI | ACTGG | 6 cut(s) | 92, 1026, 1268, 1344, 1356, 1978 |
| BseRI | GAGGAG | 7 cut(s) | 333, 336, 568, 1083, 1193, 1410, 1461 |
| BseSI | GKGCMC | 1 cut(s) | 673 |
| BseXI | GCAGC | 4 cut(s) | 13, 886, 2584, 2704 |
| Bsh1236I | CGCG | 5 cut(s) | 66, 1122, 1778, 1958, 2469 |
| BshFI | GGCC | 3 cut(s) | 938, 1624, 2826 |
| BshVI | ATCGAT | 1 cut(s) | 2814 |
| BsiHKAI | GWGCWC | 2 cut(s) | 673, 1377 |
| BsiSI | CCGG | 6 cut(s) | 257, 302, 707, 824, 1872, 2694 |
| BslFI | GGGAC | 1 cut(s) | 1332 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 308, 1061, 1243, 1350 |
| BsmAI | GTCTC | 5 cut(s) | 189, 708, 1921, 2721, 2830 |
| BsmFI | GGGAC | 1 cut(s) | 1332 |
| BsnI | GGCC | 3 cut(s) | 938, 1624, 2826 |
| Bso31I | GGTCTC | 1 cut(s) | 708 |
| Bsp1286I | GDGCHC | 2 cut(s) | 673, 1377 |
| Bsp13I | TCCGGA | 1 cut(s) | 823 |
| Bsp1407I | TGTACA | 1 cut(s) | 76 |
| BspACI | CCGC | 5 cut(s) | 312, 315, 550, 1122, 2957 |
| BspANI | GGCC | 3 cut(s) | 938, 1624, 2826 |
| BspCNI | CTCAG | 8 cut(s) | 115, 487, 598, 1117, 1507, 1797, 2820, 2858 |
| BspDI | ATCGAT | 1 cut(s) | 2814 |
| BspEI | TCCGGA | 1 cut(s) | 823 |
| BspFNI | CGCG | 5 cut(s) | 66, 1122, 1778, 1958, 2469 |
| BspMI | ACCTGC | 1 cut(s) | 468 |
| BspPI | GGATC | 5 cut(s) | 304, 1532, 2503, 2639, 2819 |
| BspTNI | GGTCTC | 1 cut(s) | 708 |
| BsrDI | GCAATG | 4 cut(s) | 988, 1559, 1662, 2727 |
| BsrFI | RCCGGY | 2 cut(s) | 256, 1871 |
| BsrGI | TGTACA | 1 cut(s) | 76 |
| BsrI | ACTGG | 6 cut(s) | 92, 1026, 1268, 1344, 1356, 1978 |
| BssAI | RCCGGY | 2 cut(s) | 256, 1871 |
| BssECI | CCNNGG | 3 cut(s) | 111, 1349, 2748 |
| BssT1I | CCWWGG | 2 cut(s) | 111, 2748 |
| Bst2UI | CCWGG | 6 cut(s) | 814, 1312, 1351, 1626, 2378, 2571 |
| Bst4CI | ACNGT | 8 cut(s) | 471, 1849, 2357, 2374, 2414, 2738, 2783, 2968 |
| Bst6I | CTCTTC | 6 cut(s) | 506, 1170, 1171, 1972, 2151, 2313 |
| BstAUI | TGTACA | 1 cut(s) | 76 |
| BstC8I | GCNNGC | 9 cut(s) | 254, 897, 1228, 1765, 1776, 2041, 2445, 2955, 2997 |
| BstF5I | GGATG | 7 cut(s) | 46, 121, 151, 541, 643, 2164, 2276 |
| BstFNI | CGCG | 5 cut(s) | 66, 1122, 1778, 1958, 2469 |
| BstH2I | RGCGCY | 1 cut(s) | 1020 |
| BstHHI | GCGC | 4 cut(s) | 1019, 1503, 1940, 2471 |
| BstMAI | GTCTC | 5 cut(s) | 189, 708, 1921, 2721, 2830 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 431, 908, 935, 1372, 1661, 1868, 2254, 2882 |
| BstNI | CCWGG | 6 cut(s) | 814, 1312, 1351, 1626, 2378, 2571 |
| BstNSI | RCATGY | 2 cut(s) | 2874, 2999 |
| BstSCI | CCNGG | 9 cut(s) | 301, 706, 812, 1310, 1349, 1624, 2376, 2569, 2693 |
| BstSFI | CTRYAG | 1 cut(s) | 165 |
| BstSLI | GKGCMC | 1 cut(s) | 673 |
| BstUI | CGCG | 5 cut(s) | 66, 1122, 1778, 1958, 2469 |
| BstV1I | GCAGC | 4 cut(s) | 13, 886, 2584, 2704 |
| BstV2I | GAAGAC | 1 cut(s) | 400 |
| BstX2I | RGATCY | 5 cut(s) | 296, 1537, 1572, 1709, 2858 |
| BstYI | RGATCY | 5 cut(s) | 296, 1537, 1572, 1709, 2858 |
| Bsu15I | ATCGAT | 1 cut(s) | 2814 |
| BsuRI | GGCC | 3 cut(s) | 938, 1624, 2826 |
| BsuTUI | ATCGAT | 1 cut(s) | 2814 |
| BtrI | CACGTC | 2 cut(s) | 2176, 2918 |
| BtsCI | GGATG | 7 cut(s) | 46, 121, 151, 541, 643, 2164, 2276 |
| BtsIMutI | CAGTG | 2 cut(s) | 85, 476 |
| BveI | ACCTGC | 1 cut(s) | 468 |
| Cac8I | GCNNGC | 9 cut(s) | 254, 897, 1228, 1765, 1776, 2041, 2445, 2955, 2997 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1667, 2461 |
| CfoI | GCGC | 4 cut(s) | 1019, 1503, 1940, 2471 |
| Cfr10I | RCCGGY | 2 cut(s) | 256, 1871 |
| Cfr13I | GGNCC | 3 cut(s) | 14, 1353, 2567 |
| ClaI | ATCGAT | 1 cut(s) | 2814 |
| CseI | GACGC | 3 cut(s) | 1767, 1947, 2968 |
| Csp6I | GTAC | 2 cut(s) | 77, 1341 |
| CviAII | CATG | 5 cut(s) | 1273, 1790, 2288, 2871, 2996 |
| CviQI | GTAC | 2 cut(s) | 77, 1341 |
| Eam1104I | CTCTTC | 6 cut(s) | 506, 1170, 1171, 1972, 2151, 2313 |
| EarI | CTCTTC | 6 cut(s) | 506, 1170, 1171, 1972, 2151, 2313 |
| EciI | GGCGGA | 2 cut(s) | 330, 565 |
| Ecl136II | GAGCTC | 1 cut(s) | 1375 |
| Eco130I | CCWWGG | 2 cut(s) | 111, 2748 |
| Eco147I | AGGCCT | 1 cut(s) | 1624 |
| Eco24I | GRGCYC | 1 cut(s) | 1377 |
| Eco31I | GGTCTC | 1 cut(s) | 708 |
| Eco32I | GATATC | 2 cut(s) | 1515, 2578 |
| Eco47I | GGWCC | 3 cut(s) | 14, 1353, 2567 |
| Eco53kI | GAGCTC | 1 cut(s) | 1375 |
| Eco57I | CTGAAG | 2 cut(s) | 719, 3013 |
| EcoICRI | GAGCTC | 1 cut(s) | 1375 |
| EcoO109I | RGGNCCY | 1 cut(s) | 14 |
| EcoRI | GAATTC | 1 cut(s) | 1797 |
| EcoRII | CCWGG | 6 cut(s) | 812, 1310, 1349, 1624, 2376, 2569 |
| EcoRV | GATATC | 2 cut(s) | 1515, 2578 |
| EcoT14I | CCWWGG | 2 cut(s) | 111, 2748 |
| EcoT22I | ATGCAT | 1 cut(s) | 2997 |
| EcoT38I | GRGCYC | 1 cut(s) | 1377 |
| ErhI | CCWWGG | 2 cut(s) | 111, 2748 |
| FaeI | CATG | 5 cut(s) | 1276, 1793, 2291, 2874, 2999 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 2214, 2246, 2417, 2449 |
| FaqI | GGGAC | 1 cut(s) | 1332 |
| FatI | CATG | 5 cut(s) | 1272, 1789, 2287, 2870, 2995 |
| FauNDI | CATATG | 1 cut(s) | 1944 |
| FblI | GTMKAC | 1 cut(s) | 1186 |
| Fnu4HI | GCNGC | 5 cut(s) | 27, 313, 900, 2598, 2718 |
| FokI | GGATG | 7 cut(s) | 33, 128, 158, 548, 650, 2151, 2263 |
| FriOI | GRGCYC | 1 cut(s) | 1377 |
| Fsp4HI | GCNGC | 5 cut(s) | 27, 313, 900, 2598, 2718 |
| FspI | TGCGCA | 1 cut(s) | 1939 |
| GlaI | GCGC | 4 cut(s) | 1018, 1502, 1939, 2470 |
| GluI | GCNGC | 5 cut(s) | 27, 313, 900, 2598, 2718 |
| GsuI | CTGGAG | 4 cut(s) | 173, 620, 915, 1251 |
| HaeII | RGCGCY | 1 cut(s) | 1020 |
| HaeIII | GGCC | 3 cut(s) | 938, 1624, 2826 |
| HapII | CCGG | 6 cut(s) | 257, 302, 707, 824, 1872, 2694 |
| HgaI | GACGC | 3 cut(s) | 1767, 1947, 2968 |
| HhaI | GCGC | 4 cut(s) | 1019, 1503, 1940, 2471 |
| Hin1II | CATG | 5 cut(s) | 1276, 1793, 2291, 2874, 2999 |
| Hin6I | GCGC | 4 cut(s) | 1017, 1501, 1938, 2469 |
| HinP1I | GCGC | 4 cut(s) | 1017, 1501, 1938, 2469 |
| HincII | GTYRAC | 4 cut(s) | 654, 999, 1187, 1992 |
| HindII | GTYRAC | 4 cut(s) | 654, 999, 1187, 1992 |
| HpaI | GTTAAC | 3 cut(s) | 654, 999, 1992 |
| HpaII | CCGG | 6 cut(s) | 257, 302, 707, 824, 1872, 2694 |
| HphI | GGTGA | 6 cut(s) | 17, 1153, 1161, 1245, 1886, 2105 |
| Hpy166II | GTNNAC | 7 cut(s) | 654, 671, 999, 1187, 1992, 2762, 2915 |
| Hpy8I | GTNNAC | 7 cut(s) | 654, 671, 999, 1187, 1992, 2762, 2915 |
| Hpy99I | CGWCG | 1 cut(s) | 2922 |
| HpyAV | CCTTC | 4 cut(s) | 242, 277, 1065, 2896 |
| HpyCH4III | ACNGT | 8 cut(s) | 471, 1849, 2357, 2374, 2414, 2738, 2783, 2968 |
| HpyCH4IV | ACGT | 3 cut(s) | 2013, 2175, 2917 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 431, 908, 935, 1372, 1661, 1868, 2254, 2882 |
| HpySE526I | ACGT | 3 cut(s) | 2013, 2175, 2917 |
| Hsp92II | CATG | 5 cut(s) | 1276, 1793, 2291, 2874, 2999 |
| HspAI | GCGC | 4 cut(s) | 1017, 1501, 1938, 2469 |
| Kpn2I | TCCGGA | 1 cut(s) | 823 |
| KspAI | GTTAAC | 3 cut(s) | 654, 999, 1992 |
| LmnI | GCTCC | 6 cut(s) | 34, 826, 934, 1397, 1498, 1554 |
| Lsp1109I | GCAGC | 4 cut(s) | 13, 886, 2584, 2704 |
| LweI | GCATC | 9 cut(s) | 441, 562, 920, 1208, 1394, 1441, 2620, 2677, 2940 |
| MaeII | ACGT | 3 cut(s) | 2013, 2175, 2917 |
| MaeIII | GTNAC | 9 cut(s) | 105, 197, 968, 1232, 1779, 1949, 1969, 2093, 2738 |
| MfeI | CAATTG | 1 cut(s) | 372 |
| MflI | RGATCY | 5 cut(s) | 296, 1537, 1572, 1709, 2858 |
| MhlI | GDGCHC | 2 cut(s) | 673, 1377 |
| MluI | ACGCGT | 1 cut(s) | 1956 |
| MlyI | GAGTC | 3 cut(s) | 191, 1192, 2438 |
| MmeI | TCCRAC | 1 cut(s) | 2055 |
| Mph1103I | ATGCAT | 1 cut(s) | 2997 |
| MroI | TCCGGA | 1 cut(s) | 823 |
| MroXI | GAANNNNTTC | 2 cut(s) | 2160, 2226 |
| MslI | CAYNNNNRTG | 5 cut(s) | 257, 632, 1788, 2492, 2750 |
| MspI | CCGG | 6 cut(s) | 257, 302, 707, 824, 1872, 2694 |
| MspR9I | CCNGG | 9 cut(s) | 303, 708, 814, 1312, 1351, 1626, 2378, 2571, 2695 |
| MunI | CAATTG | 1 cut(s) | 372 |
| MvaI | CCWGG | 6 cut(s) | 814, 1312, 1351, 1626, 2378, 2571 |
| MvnI | CGCG | 5 cut(s) | 66, 1122, 1778, 1958, 2469 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 431, 908, 935, 1372, 1661, 1868, 2254, 2882 |
| NciI | CCSGG | 3 cut(s) | 303, 708, 2695 |
| NdeI | CATATG | 1 cut(s) | 1944 |
| NlaIII | CATG | 5 cut(s) | 1276, 1793, 2291, 2874, 2999 |
| NmeAIII | GCCGAG | 1 cut(s) | 887 |
| NmuCI | GTSAC | 2 cut(s) | 1779, 2093 |
| NsbI | TGCGCA | 1 cut(s) | 1939 |
| NsiI | ATGCAT | 1 cut(s) | 2997 |
| NspI | RCATGY | 2 cut(s) | 2874, 2999 |
| OliI | CACNNNNGTG | 2 cut(s) | 257, 2750 |
| PaeI | GCATGC | 1 cut(s) | 2999 |
| PceI | AGGCCT | 1 cut(s) | 1624 |
| PciI | ACATGT | 1 cut(s) | 2870 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1853 |
| PdmI | GAANNNNTTC | 2 cut(s) | 2160, 2226 |
| PfeI | GAWTC | 8 cut(s) | 220, 604, 775, 844, 1115, 1724, 2143, 2464 |
| PfoI | TCCNGGA | 3 cut(s) | 301, 706, 2376 |
| PkrI | GCNGC | 5 cut(s) | 28, 314, 901, 2599, 2719 |
| PleI | GAGTC | 3 cut(s) | 190, 1191, 2437 |
| PpsI | GAGTC | 3 cut(s) | 190, 1191, 2437 |
| PpuMI | RGGWCCY | 1 cut(s) | 14 |
| PscI | ACATGT | 1 cut(s) | 2870 |
| Psp124BI | GAGCTC | 1 cut(s) | 1377 |
| Psp5II | RGGWCCY | 1 cut(s) | 14 |
| Psp6I | CCWGG | 6 cut(s) | 812, 1310, 1349, 1624, 2376, 2569 |
| PspGI | CCWGG | 6 cut(s) | 812, 1310, 1349, 1624, 2376, 2569 |
| PspPI | GGNCC | 3 cut(s) | 14, 1353, 2567 |
| PspPPI | RGGWCCY | 1 cut(s) | 14 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1667, 2461 |
| PsuI | RGATCY | 5 cut(s) | 296, 1537, 1572, 1709, 2858 |
| RsaI | GTAC | 2 cut(s) | 78, 1342 |
| RsaNI | GTAC | 2 cut(s) | 77, 1341 |
| RseI | CAYNNNNRTG | 5 cut(s) | 257, 632, 1788, 2492, 2750 |
| SacI | GAGCTC | 1 cut(s) | 1377 |
| SalI | GTCGAC | 1 cut(s) | 1185 |
| SatI | GCNGC | 5 cut(s) | 27, 313, 900, 2598, 2718 |
| Sau96I | GGNCC | 3 cut(s) | 14, 1353, 2567 |
| SchI | GAGTC | 3 cut(s) | 191, 1192, 2438 |
| ScrFI | CCNGG | 9 cut(s) | 303, 708, 814, 1312, 1351, 1626, 2378, 2571, 2695 |
| SduI | GDGCHC | 2 cut(s) | 673, 1377 |
| SfaNI | GCATC | 9 cut(s) | 441, 562, 920, 1208, 1394, 1441, 2620, 2677, 2940 |
| SfcI | CTRYAG | 1 cut(s) | 165 |
| SgrAI | CRCCGGYG | 1 cut(s) | 256 |
| SinI | GGWCC | 3 cut(s) | 14, 1353, 2567 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 257, 632, 1788, 2492, 2750 |
| SmlI | CTYRAG | 3 cut(s) | 18, 954, 1682 |
| SmoI | CTYRAG | 3 cut(s) | 18, 954, 1682 |
| SpeI | ACTAGT | 1 cut(s) | 1337 |
| SphI | GCATGC | 1 cut(s) | 2999 |
| SseBI | AGGCCT | 1 cut(s) | 1624 |
| SsiI | CCGC | 5 cut(s) | 312, 315, 550, 1122, 2957 |
| SstI | GAGCTC | 1 cut(s) | 1377 |
| StuI | AGGCCT | 1 cut(s) | 1624 |
| StyD4I | CCNGG | 9 cut(s) | 301, 706, 812, 1310, 1349, 1624, 2376, 2569, 2693 |
| StyI | CCWWGG | 2 cut(s) | 111, 2748 |
| TaaI | ACNGT | 8 cut(s) | 471, 1849, 2357, 2374, 2414, 2738, 2783, 2968 |
| TaiI | ACGT | 3 cut(s) | 2016, 2178, 2920 |
| TaqI | TCGA | 7 cut(s) | 785, 1139, 1186, 2685, 2814, 2920, 2948 |
| TaqII | GACCGA | 1 cut(s) | 289 |
| TatI | WGTACW | 1 cut(s) | 76 |
| TauI | GCSGC | 1 cut(s) | 315 |
| TfiI | GAWTC | 8 cut(s) | 220, 604, 775, 844, 1115, 1724, 2143, 2464 |
| TscAI | CASTG | 2 cut(s) | 92, 476 |
| TseFI | GTSAC | 2 cut(s) | 1779, 2093 |
| TseI | GCWGC | 4 cut(s) | 26, 899, 2597, 2717 |
| Tsp45I | GTSAC | 2 cut(s) | 1779, 2093 |
| TspGWI | ACGGA | 2 cut(s) | 1935, 2509 |
| TspRI | CASTG | 2 cut(s) | 92, 476 |
| VneI | GTGCAC | 1 cut(s) | 669 |
| VpaK11BI | GGWCC | 3 cut(s) | 14, 1353, 2567 |
| XapI | RAATTY | 7 cut(s) | 804, 1690, 1730, 1797, 1828, 2321, 2398 |
| XceI | RCATGY | 2 cut(s) | 2874, 2999 |
| XmiI | GTMKAC | 1 cut(s) | 1186 |
| XmnI | GAANNNNTTC | 2 cut(s) | 2160, 2226 |
| Zsp2I | ATGCAT | 1 cut(s) | 2997 |