Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008543

Physical Location & Seq

Genomic Coordinates Forward (+)

35295946 .. 35302512

Gene Structure 6567 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19457

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3228 bp

ATGGAAGAGGTTGGTGCCCAAGTTGCTGCCCCAATTTACCTCCGGCAATCGCTTTCGAGTCGGTTCTGCGACGCGCCGGCGGCGGCGGCCATGGGTAAGAAGAAGCGCGATCTCCCTTACCAGACCCCCCCAAACTATCAACACCCAAATTCGCAGCAGAGGTTCGCAAACGCCGGGACCAACAGCTGGAACCCAAGCGTTTGGGGATGGGACAGTATGAGGTTTGTAGCCAAGCCACTGGACACTGAGATGATGGGTACTTCCAATTCAGAGCCCAAGAGGAAGGAGGAAGCGGCTGCTGGAGTTGTGAAGAGCACCGCGGTGGTGGAGGATGATGATGAACGCCTTCAGCTGAATCTGGGTGGTGGGTTGGCTTCTGTGGAGGAGCCGGCGGCATCCAGGCCGAATAAGAGGGTCCGGTCCGGATCTCCGGGGAATAATGGTGGAAGCTACCCCATGTGCCAAGTTGATGATTGTAAAGAGGATCTGTCAAGTGCCAAAGACTATCATCGCCGTCATAAAGTCTGTGAGAGTCACAGTAAATCCACCAAAGCCCTAGTTGCTAAGCAGATGCAGAGGTTCTGCCAGCAGTGCAGCAGGTTTCACCCGCTTTCAGAGTTTGATGAGGGGAAGAGAAGTTGCAGAAGGAGACTTGCGGGGCATAACAGGCGAAGAAGGAAAACCCAGCCTGAGGATGTTACCTCAAGGCTCACTATCCCTGGAGATGGGGATAACAAAACTAGTGGAAATTTGGATATTGTCAACTTGTTAGCTGCTATAACTCGTCCGCAGGGGAAAAATGATGTCCGAACTACCAACGGCTCGTCGGTACTGGACAGAGAGCAGCTCCTTCAGATTCTTAGTAAGATAAATTCATTGCCTTTGCCAGTAGACCTTGCTGCCAAGTTGCCGAATCTCGGAAATTTAAATTGGAAAGCTTCAGACCTGCTTTCTTTAGATCTTCAAAACAAATTGAACGGAAAAACATCTGCGTCAACCATGGACTTGATTACTGTTCTTTCAGCTACTCTAGCAGCACCTTCTTCTGACACACTTGCTATGTTATCTCAAAAGAGCAGTCAGAGTAGTGACAGTGAGAAAACTAAGTTAACATGCTCTGACCAGGTAGCTGGTCCTAATTTGCAGAAGAGGCCTCCTCAAGAGTTTCATTCAGCTGGGGGAGAGAGAAGTAGTACTAGCTACCAGTCTCCTACAGAAGATTCAGACTGCCAGGTTCAAGAGACTCGAGTCAAATTACCTTTACAGCTATTCAGCTCCTCACCTGAGGATGACAGTCCACCAAAACTGGCTTCTTCCAGAAAGTATTTCTCTTCAGATAGTAGTAATCGCACAGAGGAGAGGTCTCCATCATCGTCACCTCCTGTAATGCAAACACTGTTTCCAATGAAGAGTATGGCAGACACTGTCAAGTCGGAGAAACTTTCAATAAGCAAAGATTTGAATGTGAACCTGGACTCTAGCATGAACGGTGGTAGTAACTTGCCTTTTGATCTTTTTAGAGGGCCAAATAGAGGAGCTCTCAGCTCCTCCATTCAAAATTTTCCACACCAAGCTGGCTATACATCTTCTAGTTCTGATCATTCACCATCTAGCTTGAATTCTGATCCTCAGGATCGTACTGGAAGAATACTGTTTAAACTATTTGATAAGGATCCGAGTCAGTTACCAGGGACATTGCGGACACAGGTATACAGTTGGCTTTCTAACAGTCCATCTGAAATGGAGAGCTACATAAGGCCTGGCTGTGTGGTCCTATCAGTTTATGTGTCAATGTCATTTGCGGCCTGGGAGCATCTTGAAGAAAACCTGGTCCAACGTGTCAGTTCTTTAATACAGAGTTCAGATTCTGATTTTTGGAGAAGTGGACGGTTTTTAGTAAATACAGGGAGGCAATTAGCTTCTCATAAAGATGGAAAGATTCGTCTATGCAAAGCCTGGACAACATTCAGTTCACCAGAGTTAATCTCTGTGTCCCCTTTGGCTGTCGTGGGCGGGCAAAAAACCTCTCTTTCAATAAGGGGTAGAAATCTGACTAATCTTGGCACCAAGATTCATTGCACGTATATGGGTGGTTACACATCAAGGGAAGTTGGAACAACATATCATGGAACTGCGTATGATGAGATAAATTTGGGAAGCTTTCAAATTCATGATGCATCTCCCGGTGTTCTAGGTCGCTGTTTCATAGAGGTGGAAAATGGTTTCAAGGGAAACAGCTTTCCTGTGATCATAGCTGATGCTACAATCTGTAGCGAATTGAATCTCATTGAGTCTGAGTTTGATGGGGAGACAAAGGTATGCAGTGCAATTTCAGAAGATGAAAATCATGATTATGGGCGGCCCAGGTCAAGGGAGGAAGTCCTTCACTTTCTGAACGAGCTAGGATGGCTCTTCCAAAGGAAAAGGATCTCTTCCATGTTTCAAGGGTCCGGCTACTCTCTTAGCCGATTCAAATTTTTACTCACATTCACTGTTGAGAGAGACTGTTGTACTTTGGTGAAAACACTTCTAGACATATTGGTAAATTTCGATGGGAATGAGCTATCAAGAGAGTCATTGGGGATGCTGTCAGATGTCCAGCTGTTAAACCGGGCTGTAAAAAGGAGGTGCAGGAAGATGATTGACTTGCTTATTAATTATTCTGTGATTAGCAGTGACAAGAGATACATTTTTCCTCCAAATCTTGCTGGACCTGGTGGCCTGACACCTCTTCATTTGGCTGCTTCTTTGTCAAATTCGGAGGATATGATTGATGCTTTGACGAATGACCCAGAGGAGATCGGATTGAACTGCTGGCATTCCCTTTTGGATGGTAATGGGCAGTCTCCATATGCTTATGCTATGATGAGGAATAATTACTCTTACAACAATCTGGTGGCTCGCAAACTTACTGACAGAAGAAATAGTCAGGTTACCTTAACAATTGGAAATGAGATAGAGCAAACCCATATGGCTATGGCGCTGGAGCGAAGGACAAGTATCCAATTCAGACAAGGTAGCAGATCATGTGCCAAATGCGCAGTTGCAGCAACAAAATACACCAGGAGGGTTCCTGGTGCTCAAGGCTTGCTTCAGCGTCCATTCATTCATTCTATGCTTGCCATAGCTGCTGTTTGTGTTTGTGTGTGCTTGTTCTTGAGAGGTTCCCCAGACATTGGCTCAGTTGCTCCTTTCAAGTGGGAGAATTTGGATTTTGGCACAATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0071944 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBP

Protein Analysis

1075

Amino Acids

118.62

Weight (kDa)

8.56

Isoelectric Point (pI)

56.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SBP	PF03110	154 - 227	3.4e-30	SBP domain
Ig_SPL7	PF26102	657 - 761	1.2e-34	SPL7-like, immunoglobulin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008543)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20980 AT1G76580 AT1G76580 AT1G76580
fragaria_vesca	FvH4_5g26510 FvH4_5g26510 FvH4_5g26510 FvH4_5g26510
malus_domestica	MD00G1031600.v1.1 MD06G1001500.v1.1
prunus_persica	Prupe.5G002300_v2.0.a1
pyrus_communis	pycom06g00160 pycom16g26290
rosa_chinensis	RchiOBHm_Chr7g0217411
rosa_laevigata	RLG00000002479
rosa_multiflora	Rmu_sc0000145.1_g000013
rosa_roxburghii	Rroxscaffold_3G00242100
rosa_rugosa	Rorug07G0169000
rosa_samantha	Rh7AG308600 Rh7BG299300 Rh7CG328000 Rh7DG307900
rosa_wichuraiana	Rw7G026170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	3040
Acc36I	ACCTGC	2 cut(s)	588, 954
AccB1I	GGYRCC	2 cut(s)	14, 2063
AccB7I	CCANNNNNTGG	2 cut(s)	186, 3176
AccI	GTMKAC	2 cut(s)	891, 1710
AccII	CGCG	3 cut(s)	74, 108, 320
AccIII	TCCGGA	1 cut(s)	422
AclWI	GGATC	7 cut(s)	433, 492, 1619, 1641, 1667, 1680, 2435
AcoI	YGGCCR	1 cut(s)	87
AcuI	CTGAAG	5 cut(s)	332, 836, 924, 1317, 3077
AfaI	GTAC	5 cut(s)	259, 831, 1195, 1639, 2512
AfiI	CCNNNNNNNGG	7 cut(s)	186, 691, 725, 917, 1532, 2370, 3176
AflIII	ACRYGT	1 cut(s)	1837
AhlI	ACTAGT	1 cut(s)	740
AjuI	GAANNNNNNNTTGG	4 cut(s)	913, 945, 1294, 1326
AleI	CACNNNNGTG	1 cut(s)	320
Alw21I	GWGCWC	3 cut(s)	317, 1540, 3082
Alw26I	GTCTC	7 cut(s)	643, 1212, 1235, 1368, 2303, 2496, 2850
AlwI	GGATC	7 cut(s)	433, 492, 1619, 1641, 1667, 1680, 2435
AlwNI	CAGNNNCTG	2 cut(s)	1424, 1868
Ama87I	CYCGRG	1 cut(s)	1245
Aor13HI	TCCGGA	1 cut(s)	422
AoxI	GGCC	8 cut(s)	87, 401, 1151, 1523, 1757, 1803, 2360, 2719
ArsI	GACNNNNNNTTYG	2 cut(s)	1063, 1095
AseI	ATTAAT	1 cut(s)	2655
Asp700I	GAANNNNTTC	2 cut(s)	345, 2382
AspLEI	GCGC	4 cut(s)	76, 108, 2983, 3041
AsuC2I	CCSGG	4 cut(s)	175, 432, 2184, 2612
AsuHPI	GGTGA	6 cut(s)	596, 1272, 1368, 1596, 1965, 2530
AvaI	CYCGRG	1 cut(s)	1245
AvaII	GGWCC	8 cut(s)	177, 415, 420, 1133, 1771, 1831, 2448, 2711
AxyI	CCTNAGG	3 cut(s)	690, 1284, 1629
BaeGI	GKGCMC	1 cut(s)	19
BamHI	GGATCC	1 cut(s)	1672
BanI	GGYRCC	2 cut(s)	14, 2063
BanII	GRGCYC	2 cut(s)	276, 1540
Bbv12I	GWGCWC	3 cut(s)	317, 1540, 3082
BceAI	ACGGC	2 cut(s)	498, 835
BciVI	GTATCC	1 cut(s)	3011
BclI	TGATCA	2 cut(s)	1597, 2247
BcnI	CCSGG	4 cut(s)	175, 432, 2184, 2612
BcoDI	GTCTC	7 cut(s)	643, 1212, 1235, 1368, 2303, 2496, 2850
BcuI	ACTAGT	1 cut(s)	740
BfmI	CTRYAG	2 cut(s)	1212, 2269
BfoI	RGCGCY	1 cut(s)	2984
BfuAI	ACCTGC	2 cut(s)	588, 954
BfuI	GTATCC	1 cut(s)	3011
BglII	AGATCT	1 cut(s)	958
BlpI	GCTNAGC	1 cut(s)	564
BmcAI	AGTACT	1 cut(s)	1195
Bme18I	GGWCC	8 cut(s)	177, 415, 420, 1133, 1771, 1831, 2448, 2711
BmeT110I	CYCGRG	1 cut(s)	1245
BmsI	GCATC	8 cut(s)	404, 561, 1822, 2164, 2186, 2248, 2574, 2764
BoxI	GACNNNNGTC	1 cut(s)	1247
BplI	GAGNNNNNCTC	8 cut(s)	831, 863, 1141, 1173, 1524, 1556, 1970, 2002
BpmI	CTGGAG	3 cut(s)	321, 741, 3005
Bpu1102I	GCTNAGC	1 cut(s)	564
BpuEI	CTTGAG	4 cut(s)	688, 1143, 3066, 3178
BpuMI	CCSGG	4 cut(s)	175, 432, 2184, 2612
BsaAI	YACGTR	1 cut(s)	2082
BsaBI	GATNNNNATC	2 cut(s)	1671, 2343
BsaI	GGTCTC	1 cut(s)	1368
BsaJI	CCNNGG	8 cut(s)	90, 318, 431, 718, 999, 1688, 1806, 2363
BsaWI	WCCGGW	2 cut(s)	417, 422
Bsc4I	CCNNNNNNNGG	7 cut(s)	186, 691, 725, 917, 1532, 2370, 3176
Bse118I	RCCGGY	2 cut(s)	76, 388
Bse1I	ACTGG	6 cut(s)	243, 837, 887, 1204, 1311, 1645
Bse21I	CCTNAGG	3 cut(s)	690, 1284, 1629
Bse3DI	GCAATG	3 cut(s)	875, 1694, 2074
Bse8I	GATNNNNATC	2 cut(s)	1671, 2343
BseAI	TCCGGA	1 cut(s)	422
BseDI	CCNNGG	8 cut(s)	90, 318, 431, 718, 999, 1688, 1806, 2363
BseGI	GGATG	8 cut(s)	212, 337, 395, 700, 1294, 2411, 2589, 2836
BseJI	GATNNNNATC	2 cut(s)	1671, 2343
BseLI	CCNNNNNNNGG	7 cut(s)	186, 691, 725, 917, 1532, 2370, 3176
BseMI	GCAATG	3 cut(s)	875, 1694, 2074
BseMII	CTCAG	7 cut(s)	237, 681, 1275, 1555, 1643, 2286, 3195
BseNI	ACTGG	6 cut(s)	243, 837, 887, 1204, 1311, 1645
BseRI	GAGGAG	7 cut(s)	398, 1146, 1267, 1370, 1537, 1548, 2810
BseSI	GKGCMC	1 cut(s)	19
BseYI	CCCAGC	2 cut(s)	684, 1175
BsgI	GTGCAG	2 cut(s)	613, 2650
Bsh1236I	CGCG	3 cut(s)	74, 108, 320
BshFI	GGCC	8 cut(s)	89, 403, 1153, 1525, 1759, 1805, 2362, 2721
BshNI	GGYRCC	2 cut(s)	14, 2063
BsiHKAI	GWGCWC	3 cut(s)	317, 1540, 3082
BsiHKCI	CYCGRG	1 cut(s)	1245
BslFI	GGGAC	4 cut(s)	190, 224, 1705, 1978
BslI	CCNNNNNNNGG	7 cut(s)	186, 691, 725, 917, 1532, 2370, 3176
BsmAI	GTCTC	7 cut(s)	643, 1212, 1235, 1368, 2303, 2496, 2850
BsmFI	GGGAC	4 cut(s)	190, 224, 1705, 1978
BsmI	GAATGC	1 cut(s)	2818
BsnI	GGCC	8 cut(s)	89, 403, 1153, 1525, 1759, 1805, 2362, 2721
Bso31I	GGTCTC	1 cut(s)	1368
BsoBI	CYCGRG	1 cut(s)	1245
Bsp1286I	GDGCHC	5 cut(s)	19, 276, 317, 1540, 3082
Bsp13I	TCCGGA	1 cut(s)	422
Bsp1720I	GCTNAGC	1 cut(s)	564
Bsp19I	CCATGG	2 cut(s)	90, 999
BspANI	GGCC	8 cut(s)	89, 403, 1153, 1525, 1759, 1805, 2362, 2721
BspCNI	CTCAG	7 cut(s)	238, 682, 1276, 1554, 1642, 2287, 3194
BspEI	TCCGGA	1 cut(s)	422
BspFNI	CGCG	3 cut(s)	74, 108, 320
BspHI	TCATGA	2 cut(s)	2170, 2347
BspMI	ACCTGC	2 cut(s)	588, 954
BspPI	GGATC	7 cut(s)	433, 492, 1619, 1641, 1667, 1680, 2435
BspQI	GCTCTTC	2 cut(s)	305, 2417
BspT107I	GGYRCC	2 cut(s)	14, 2063
BspTNI	GGTCTC	1 cut(s)	1368
BsrDI	GCAATG	3 cut(s)	875, 1694, 2074
BsrFI	RCCGGY	2 cut(s)	76, 388
BsrI	ACTGG	6 cut(s)	243, 837, 887, 1204, 1311, 1645
BssAI	RCCGGY	2 cut(s)	76, 388
BssECI	CCNNGG	8 cut(s)	90, 318, 431, 718, 999, 1688, 1806, 2363
BssNAI	GTATAC	1 cut(s)	1711
BssT1I	CCWWGG	2 cut(s)	90, 999
Bst1107I	GTATAC	1 cut(s)	1711
Bst6I	CTCTTC	8 cut(s)	305, 626, 1142, 1336, 1403, 2417, 2437, 2736
BstBAI	YACGTR	1 cut(s)	2082
BstC8I	GCNNGC	9 cut(s)	78, 390, 587, 1576, 2015, 2816, 2902, 3089, 3120
BstDSI	CCRYGG	3 cut(s)	90, 318, 999
BstEII	GGTNACC	1 cut(s)	2932
BstF5I	GGATG	8 cut(s)	212, 337, 395, 700, 1294, 2411, 2589, 2836
BstFNI	CGCG	3 cut(s)	74, 108, 320
BstH2I	RGCGCY	1 cut(s)	2984
BstHHI	GCGC	4 cut(s)	76, 108, 2983, 3041
BstMAI	GTCTC	7 cut(s)	643, 1212, 1235, 1368, 2303, 2496, 2850
BstNSI	RCATGY	1 cut(s)	1116
BstPAI	GACNNNNGTC	1 cut(s)	1247
BstPI	GGTNACC	1 cut(s)	2932
BstSFI	CTRYAG	2 cut(s)	1212, 2269
BstSLI	GKGCMC	1 cut(s)	19
BstUI	CGCG	3 cut(s)	74, 108, 320
BstX2I	RGATCY	5 cut(s)	425, 484, 958, 1672, 2427
BstXI	CCANNNNNNTGG	3 cut(s)	201, 238, 1130
BstYI	RGATCY	5 cut(s)	425, 484, 958, 1672, 2427
BstZ17I	GTATAC	1 cut(s)	1711
Bsu36I	CCTNAGG	3 cut(s)	690, 1284, 1629
BsuI	GTATCC	1 cut(s)	3011
BsuRI	GGCC	8 cut(s)	89, 403, 1153, 1525, 1759, 1805, 2362, 2721
BtgI	CCRYGG	3 cut(s)	90, 318, 999
BtgZI	GCGATG	1 cut(s)	494
BtsCI	GGATG	8 cut(s)	212, 337, 395, 700, 1294, 2411, 2589, 2836
BtsI	GCAGTG	3 cut(s)	596, 2329, 2680
BtsIMutI	CAGTG	9 cut(s)	236, 243, 596, 1099, 1394, 1422, 2329, 2490, 2680
BveI	ACCTGC	2 cut(s)	588, 954
Cac8I	GCNNGC	9 cut(s)	78, 390, 587, 1576, 2015, 2816, 2902, 3089, 3120
CaiI	CAGNNNCTG	2 cut(s)	1424, 1868
CciI	TCATGA	2 cut(s)	2170, 2347
CfoI	GCGC	4 cut(s)	76, 108, 2983, 3041
Cfr10I	RCCGGY	2 cut(s)	76, 388
Cfr42I	CCGCGG	1 cut(s)	321
CpoI	CGGWCCG	1 cut(s)	420
CseI	GACGC	3 cut(s)	80, 981, 3086
CsiI	ACCWGGT	3 cut(s)	1122, 1827, 2713
Csp6I	GTAC	5 cut(s)	258, 830, 1194, 1638, 2511
CspCI	CAANNNNNGTGG	2 cut(s)	724, 759
CspI	CGGWCCG	1 cut(s)	420
CviQI	GTAC	5 cut(s)	258, 830, 1194, 1638, 2511
DraI	TTTAAA	2 cut(s)	927, 1657
EaeI	YGGCCR	1 cut(s)	87
Eam1104I	CTCTTC	8 cut(s)	305, 626, 1142, 1336, 1403, 2417, 2437, 2736
EarI	CTCTTC	8 cut(s)	305, 626, 1142, 1336, 1403, 2417, 2437, 2736
Ecl136II	GAGCTC	1 cut(s)	1538
Eco130I	CCWWGG	2 cut(s)	90, 999
Eco147I	AGGCCT	2 cut(s)	1153, 1759
Eco24I	GRGCYC	2 cut(s)	276, 1540
Eco31I	GGTCTC	1 cut(s)	1368
Eco47I	GGWCC	8 cut(s)	177, 415, 420, 1133, 1771, 1831, 2448, 2711
Eco53kI	GAGCTC	1 cut(s)	1538
Eco57I	CTGAAG	5 cut(s)	332, 836, 924, 1317, 3077
Eco81I	CCTNAGG	3 cut(s)	690, 1284, 1629
Eco88I	CYCGRG	1 cut(s)	1245
Eco91I	GGTNACC	1 cut(s)	2932
EcoICRI	GAGCTC	1 cut(s)	1538
EcoO65I	GGTNACC	1 cut(s)	2932
EcoRI	GAATTC	1 cut(s)	1618
EcoT14I	CCWWGG	2 cut(s)	90, 999
EcoT22I	ATGCAT	1 cut(s)	2179
EcoT38I	GRGCYC	2 cut(s)	276, 1540
ErhI	CCWWGG	2 cut(s)	90, 999
FalI	AAGNNNNNCTT	4 cut(s)	2416, 2448, 3075, 3107
FaqI	GGGAC	4 cut(s)	190, 224, 1705, 1978
FauI	CCCGC	3 cut(s)	615, 649, 2006
FauNDI	CATATG	2 cut(s)	2851, 2970
FbaI	TGATCA	2 cut(s)	1597, 2247
FblI	GTMKAC	2 cut(s)	891, 1710
FokI	GGATG	8 cut(s)	219, 344, 382, 707, 1301, 2418, 2596, 2843
FriOI	GRGCYC	2 cut(s)	276, 1540
FspI	TGCGCA	1 cut(s)	3040
GlaI	GCGC	4 cut(s)	75, 107, 2982, 3040
GsaI	CCCAGC	2 cut(s)	688, 1179
GsuI	CTGGAG	3 cut(s)	321, 741, 3005
HaeII	RGCGCY	1 cut(s)	2984
HaeIII	GGCC	8 cut(s)	89, 403, 1153, 1525, 1759, 1805, 2362, 2721
HgaI	GACGC	3 cut(s)	80, 981, 3086
HhaI	GCGC	4 cut(s)	76, 108, 2983, 3041
Hin6I	GCGC	4 cut(s)	74, 106, 2981, 3039
HinP1I	GCGC	4 cut(s)	74, 106, 2981, 3039
HincII	GTYRAC	3 cut(s)	763, 996, 1110
HindII	GTYRAC	3 cut(s)	763, 996, 1110
HindIII	AAGCTT	2 cut(s)	936, 2158
HpaI	GTTAAC	1 cut(s)	1110
HphI	GGTGA	6 cut(s)	596, 1272, 1368, 1596, 1965, 2530
Hpy166II	GTNNAC	9 cut(s)	763, 892, 996, 1110, 1298, 1468, 1711, 1886, 1973
Hpy8I	GTNNAC	9 cut(s)	763, 892, 996, 1110, 1298, 1468, 1711, 1886, 1973
Hpy99I	CGWCG	2 cut(s)	74, 829
HpyAV	CCTTC	8 cut(s)	277, 356, 639, 669, 860, 1050, 2393, 2985
HpyCH4IV	ACGT	2 cut(s)	1837, 2081
HpySE526I	ACGT	2 cut(s)	1837, 2081
HspAI	GCGC	4 cut(s)	74, 106, 2981, 3039
Kpn2I	TCCGGA	1 cut(s)	422
KroI	GCCGGC	2 cut(s)	76, 388
KroNI	GCCGGC	2 cut(s)	78, 390
Ksp22I	TGATCA	2 cut(s)	1597, 2247
KspAI	GTTAAC	1 cut(s)	1110
KspI	CCGCGG	1 cut(s)	321
LguI	GCTCTTC	2 cut(s)	305, 2417
LmnI	GCTCC	8 cut(s)	385, 852, 1280, 1535, 1550, 1810, 2986, 3193
LweI	GCATC	8 cut(s)	404, 561, 1822, 2164, 2186, 2248, 2574, 2764
MabI	ACCWGGT	3 cut(s)	1122, 1827, 2713
MaeII	ACGT	2 cut(s)	1837, 2081
MaeIII	GTNAC	9 cut(s)	533, 697, 1088, 1374, 1496, 1683, 2093, 2675, 2932
MfeI	CAATTG	1 cut(s)	2943
MflI	RGATCY	5 cut(s)	425, 484, 958, 1672, 2427
MhlI	GDGCHC	5 cut(s)	19, 276, 317, 1540, 3082
MlyI	GAGTC	8 cut(s)	67, 541, 1237, 1257, 1469, 1687, 2300, 2582
MmeI	TCCRAC	3 cut(s)	1413, 1858, 2092
Mph1103I	ATGCAT	1 cut(s)	2179
MreI	CGCCGGCG	1 cut(s)	76
MroI	TCCGGA	1 cut(s)	422
MroNI	GCCGGC	2 cut(s)	76, 388
MroXI	GAANNNNTTC	2 cut(s)	345, 2382
MseI	TTAA	8 cut(s)	926, 1109, 1656, 1850, 1982, 2606, 2655, 2939
MslI	CAYNNNNRTG	6 cut(s)	248, 320, 1929, 2084, 2210, 2352
MspA1I	CMGCKG	5 cut(s)	186, 320, 352, 1175, 2602
MssI	GTTTAAAC	1 cut(s)	1657
MunI	CAATTG	1 cut(s)	2943
Mva1269I	GAATGC	1 cut(s)	2818
MvnI	CGCG	3 cut(s)	74, 108, 320
NaeI	GCCGGC	2 cut(s)	78, 390
NciI	CCSGG	4 cut(s)	175, 432, 2184, 2612
NcoI	CCATGG	2 cut(s)	90, 999
NdeI	CATATG	2 cut(s)	2851, 2970
NgoMIV	GCCGGC	2 cut(s)	76, 388
NmuCI	GTSAC	4 cut(s)	533, 1088, 1374, 2675
NsbI	TGCGCA	1 cut(s)	3040
NsiI	ATGCAT	1 cut(s)	2179
NspI	RCATGY	1 cut(s)	1116
OliI	CACNNNNGTG	1 cut(s)	320
PaeR7I	CTCGAG	1 cut(s)	1245
PagI	TCATGA	2 cut(s)	2170, 2347
PceI	AGGCCT	2 cut(s)	1153, 1759
PciSI	GCTCTTC	2 cut(s)	305, 2417
PctI	GAATGC	1 cut(s)	2818
PdiI	GCCGGC	2 cut(s)	78, 390
PdmI	GAANNNNTTC	2 cut(s)	345, 2382
PfeI	GAWTC	9 cut(s)	355, 856, 913, 1220, 1865, 1939, 2071, 2281, 2469
PflFI	GACNNNGTC	1 cut(s)	1424
PflMI	CCANNNNNTGG	2 cut(s)	186, 3176
PleI	GAGTC	8 cut(s)	66, 540, 1237, 1256, 1469, 1686, 2299, 2581
PmeI	GTTTAAAC	1 cut(s)	1657
PpsI	GAGTC	8 cut(s)	66, 540, 1237, 1256, 1469, 1686, 2299, 2581
Ppu21I	YACGTR	1 cut(s)	2082
PshAI	GACNNNNGTC	1 cut(s)	1247
PshBI	ATTAAT	1 cut(s)	2655
Psp124BI	GAGCTC	1 cut(s)	1540
PspEI	GGTNACC	1 cut(s)	2932
PspFI	CCCAGC	2 cut(s)	684, 1175
PspXI	VCTCGAGB	1 cut(s)	1245
PstNI	CAGNNNCTG	2 cut(s)	1424, 1868
PsuI	RGATCY	5 cut(s)	425, 484, 958, 1672, 2427
PsyI	GACNNNGTC	1 cut(s)	1424
PvuII	CAGCTG	4 cut(s)	186, 352, 1175, 2602
RsaI	GTAC	5 cut(s)	259, 831, 1195, 1639, 2512
RsaNI	GTAC	5 cut(s)	258, 830, 1194, 1638, 2511
RseI	CAYNNNNRTG	6 cut(s)	248, 320, 1929, 2084, 2210, 2352
Rsr2I	CGGWCCG	1 cut(s)	420
RsrII	CGGWCCG	1 cut(s)	420
SacI	GAGCTC	1 cut(s)	1540
SacII	CCGCGG	1 cut(s)	321
SapI	GCTCTTC	2 cut(s)	305, 2417
SaqAI	TTAA	8 cut(s)	926, 1109, 1656, 1850, 1982, 2606, 2655, 2939
ScaI	AGTACT	1 cut(s)	1195
SchI	GAGTC	8 cut(s)	67, 541, 1237, 1257, 1469, 1687, 2300, 2582
SduI	GDGCHC	5 cut(s)	19, 276, 317, 1540, 3082
SexAI	ACCWGGT	3 cut(s)	1122, 1827, 2713
SfaNI	GCATC	8 cut(s)	404, 561, 1822, 2164, 2186, 2248, 2574, 2764
SfcI	CTRYAG	2 cut(s)	1212, 2269
Sfr274I	CTCGAG	1 cut(s)	1245
Sfr303I	CCGCGG	1 cut(s)	321
SgrAI	CRCCGGYG	1 cut(s)	76
SgrBI	CCGCGG	1 cut(s)	321
SinI	GGWCC	8 cut(s)	177, 415, 420, 1133, 1771, 1831, 2448, 2711
SlaI	CTCGAG	1 cut(s)	1245
SmiI	ATTTAAAT	1 cut(s)	927
SmiMI	CAYNNNNRTG	6 cut(s)	248, 320, 1929, 2084, 2210, 2352
SmlI	CTYRAG	5 cut(s)	703, 1158, 1245, 3081, 3157
SmoI	CTYRAG	5 cut(s)	703, 1158, 1245, 3081, 3157
SpeI	ACTAGT	1 cut(s)	740
SseBI	AGGCCT	2 cut(s)	1153, 1759
SstI	GAGCTC	1 cut(s)	1540
StuI	AGGCCT	2 cut(s)	1153, 1759
StyI	CCWWGG	2 cut(s)	90, 999
SwaI	ATTTAAAT	1 cut(s)	927
TaiI	ACGT	2 cut(s)	1840, 2084
TaqI	TCGA	3 cut(s)	56, 1246, 2550
TatI	WGTACW	2 cut(s)	1193, 2510
TauI	GCSGC	7 cut(s)	83, 86, 89, 296, 395, 1805, 2362
TfiI	GAWTC	9 cut(s)	355, 856, 913, 1220, 1865, 1939, 2071, 2281, 2469
Tru1I	TTAA	8 cut(s)	926, 1109, 1656, 1850, 1982, 2606, 2655, 2939
Tru9I	TTAA	8 cut(s)	926, 1109, 1656, 1850, 1982, 2606, 2655, 2939
TscAI	CASTG	9 cut(s)	243, 250, 596, 1099, 1401, 1429, 2329, 2497, 2680
TseFI	GTSAC	4 cut(s)	533, 1088, 1374, 2675
Tsp45I	GTSAC	4 cut(s)	533, 1088, 1374, 2675
TspGWI	ACGGA	1 cut(s)	993
TspRI	CASTG	9 cut(s)	243, 250, 596, 1099, 1401, 1429, 2329, 2497, 2680
Tth111I	GACNNNGTC	1 cut(s)	1424
Van91I	CCANNNNNTGG	2 cut(s)	186, 3176
VpaK11BI	GGWCC	8 cut(s)	177, 415, 420, 1133, 1771, 1831, 2448, 2711
VspI	ATTAAT	1 cut(s)	2655
XbaI	TCTAGA	1 cut(s)	2530
XceI	RCATGY	1 cut(s)	1116
XhoI	CTCGAG	1 cut(s)	1245
XmiI	GTMKAC	2 cut(s)	891, 1710
XmnI	GAANNNNTTC	2 cut(s)	345, 2382
ZrmI	AGTACT	1 cut(s)	1195
Zsp2I	ATGCAT	1 cut(s)	2179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.