Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0008543

Physical Location & Seq

Genomic Coordinates Reverse (-)

34977895 .. 34983602

Gene Structure 5708 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002479

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3471 bp

ATGGTCCTCGGGCGGCAACACAAACGACCCCAGAGTTACTTGAATTTACGGTTCCTGCCAGTCACCGAAAGAAAAAGTCTGTTGGAAGTTAAGGACAGGAAGAAGGAAGAGAAAAAAAAGGACGACGACGACAACAACAACGAAGAAGAAGAAGAACCAGAGTTTGGTTTCATCATCACCATCAACTTCGATCCCCCTCGGATTAAATTCAGCTCAAAAGAGAATTTGTTTGTGTGTGGTTGTGAATCTGCGATGGAAGAGGTTGGTGCCCAAGTTGCTGCCCCAATATTCCTCCGGCAATCGCTGTCGAGTCGGTTCTGCGACGCGCCGGCGGCCATGGGTAAGAAGAAGCGCGATCTCCCTTACCAGACCCCAAGCTATCAACACCCAAATTCGCAGCCGAGGTTCGCAAACCCCGGGACCAACAGCTGGAACCCAAATGTTTGGGGATGGGACAGTATGAGGTTTGTAGCCAAGCCACTGGACACTGAGATGATGGGTACTTCCAATTCAGAGCCCAAGAGGAAGGAGGAGGCTGCTGCTGGAGTTGTGAAGAGTAACGCCGTGGTGGAGGATGATGATGAACGCCTTCAGCTGAATCTGGGTGGTGGGTTGGCTTCTGTGGAGGAGCCGGCGGCATCCAGGCCGAATAAGAGGGTCCGGTCCGGATCTCCGGGGAATAATGGTGGAAGCTACCCCATGTGCCAAGTTGATGATTGTAAAGAGGATCTGTCAAGTGCCAAAGACTATCATCGCCGTCATAAAGTCTGTGAGAGTCACAGTAAATCCACCAAAGCCCTAGTTGCTAAGCAGATGCAGAGGTTCTGCCAGCAGTGCAGCAGGTTTCACCCGCTTTCAGAGTTTGATGAGGGGAAGAGAAGTTGCAGAAGGAGACTTGCGGGGCATAACAGGCGAAGAAGGAAAACCCAGCCTGAGGATGTTACCTCAAGGCTCACTATCCCTGGAGATGGGGATAACAAAACTAGTGGAAATTTGGATATTGTCAACTTGTTAGCTGCTATAACTCGTCCACAGGGGAAAAATGATGTCCGAACTACCAACGGCTCGTCGGTACTGGACAGAGAGCAGCTCCTTCAGATTCTTAGTAAGATAAATTCATTGCCTTTGCCAGTAGACCTTGCTGCCAAGTTGCCGAATCTCGGAAATTTAAATTGGAAAGCTTCAGACCTACTTTCTTTAGATCTTCAAAACAAACTGAATGGAAAAACATCTGCATCAACCATGGACTTGATTACTGTTCTTTCAGCTACTCTAGCAGCACCTTCTTCTGACACACTTGCTATGCTATCTCAAAAGAGCAGTCAGAGTAGTGACAGTGAGAAAACTAAGTTAACATGCTCTGACCAGGCAGCTGGTCCTAATTTGCAGAAGAGGCCTCCTCAAGAGTTTCATTCAGCTGGGGGAGAGAGAAGTAGTACTAGCTACCAGTCTCCTACAGAAGATTCAGACTGCCAGGTTCAAGAGACTCGAGTCAAATTACCTTTACAGCTATTCAGCTCCTCACCTGAGGATGACAGTCCACCAAAACTGGCTTCTTCCAGAAAGTATTTCTCTTCAGACAGTAGTAATCGCACAGAGGAGAGGTCTCCATCATCGTCACCTCCCGTAATGCAAACACTGTTTCCAATGAAGAGTATGGCAGACACTGTCAAGTCGGAGAAACTTTCAATAAGCAAAGATTTGAATGTGAACCTTGACTCTAGCATGAATGGTGGTAGTAACTTGCCTTTTGATCTTTTTAGAGGGCCAAATAGAGGAGCTGTCAGCTCCTCCATTCAAAATTTTCCACACCAAGCTGGCTATACATCTTCTAGTTCTGATCATTCACCGTCTAGCTTGAATTCTGATCCTCAGGATCGTACTGGAAGAATACTGTTTAAACTATTTGATAAGGATCCGAGTCAGTTACCAGGGACATTGCGGACACAGGTATACAGTTGGCTTTCTAACAGTCCGTCCGAAATGGAGAGCTACATAAGGCCTGGCTGTGTGGTCCTATCAGTTTATGTGTCAATGTCATTTGCGGCCTGGGAGCATCTTGAAGAAAACCTGGTCCAACGTGTCAGTTCTTTAATACAAAGTTCAGATTCTGATTTTTGGAGAAGTGGAAGGTTTTTAGTAAATACAGGGAGGCAATTAGCTTCTCATAAAGATGGAAAGATTCGTCTATGCAAAGCCTGGACAACATTTAGTTCACCAGAGTTAATCTCCGTCTCCCCTTTGGCTGTCGTGGGCGGGCAAAAAACCTCTCTTTCAATAAGGGGTAGAAATCTGACTAATCTTGGCACCAAGATTCATTGCACGTATATGGGTGGTTACACATCAAAGGAAGTTGGAACAACATATCATGGAACCGCGTATGATGAGATAAATTTGGGAAGCTTTCAAATTCATGATGCATCTCCCGGTGTTCTAGGTCGCTGTTTCATAGAGGTGGAAAATGGTTTCAAGGGAAACTGCTTTCCTGTGATCATAGCTGATGCTACAATCTGTAGCGAATTGAATCTCATTGAGTCTGAGTTTGATGGGGAGACAAAGGTATCCAGTGCAATTTCAGAAGATGAAAATCATGATTATGGGCGACCCAGGTCAAGGGAGGAAGTGCTTCACTTTCTGAACGAGCTAGGATGGCTCTTCCAAAGGAAAAGGATCTCTTCCATGTTTCAAGGGTCCGGCTACTCTCTTAGTCGTTTCAAATTTTTACTCACATTCACTGTTGAGAGAGACTGTTGTACTTTGGTGAAAACACTTCTAGACATATTGGTAAATTTCGATGGGAATGAGCTATCAAGAGAGTCATTGGGGATGCTGTCAGATGTCCAGCTGTTAAACCGGGCTGTAAAAAGGAGGTGCAGGAAGATGATTGACTTGCTTATTAATTATTCTGTGATTAGCAGTGACAAGAGATGCATTTTTCCTCCAAATCTTGCTGGACCTGGTGGCCTGACACCTCTTCATTTGGCTGCTTCTTTTTCAAATTCAGAGGATATGATTGATGCTTTGACGAATGACCCAGAGGAGATCGGATTGAACTGCTGGCATTCCCTTTTGGATGGTAATGGGCAGTCTCCATATGCTTATGCTATGATGAGGAATAATTACTCTTACAACAATCTGGTGGCTCGCAAACTTACTGACAGAAGAAATAGTCAGGTTACCTTGACAATTGGAAATGCGATAGAGCAAACCCATATGGCGATGGAGCTGGAGCGTAGGACAAGTATCCACTTCAGACAAGGTAGCAGATCATGTACCAAATGCGCAGTTGCAGCAACAAAATACACCAGGAGGGTCCCTGGTGCGCAAGGCTTGCTTCAGCGTCCATTCATTCATTCTATGCTTGCCATAGCTGCTGTTTGTGTTTGTGTCTGCTTGTTCTTGAGAGGTTCCCCAGACATTGGCTCAGTTGCTCCTTTCAAGTGGGAGAATTTGGATTTTGGCACAATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0071944 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBP

Protein Analysis

1157

Amino Acids

128.25

Weight (kDa)

8.37

Isoelectric Point (pI)

57.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SBP	PF03110	235 - 308	3.7e-30	SBP domain
Ig_SPL7	PF26102	738 - 842	7.7e-35	SPL7-like, immunoglobulin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008543)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20980 AT1G76580 AT1G76580 AT1G76580
fragaria_vesca	FvH4_5g26510 FvH4_5g26510 FvH4_5g26510 FvH4_5g26510
malus_domestica	MD00G1031600.v1.1 MD06G1001500.v1.1
prunus_persica	Prupe.5G002300_v2.0.a1
pyrus_communis	pycom06g00160 pycom16g26290
rosa_chinensis	RchiOBHm_Chr7g0217411
rosa_laevigata	RLG00000002479
rosa_multiflora	Rmu_sc0000145.1_g000013
rosa_roxburghii	Rroxscaffold_3G00242100
rosa_rugosa	Rorug07G0169000
rosa_samantha	Rh7AG308600 Rh7BG299300 Rh7CG328000 Rh7DG307900
rosa_wichuraiana	Rw7G026170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	3283, 3324
Acc36I	ACCTGC	1 cut(s)	831
AccB1I	GGYRCC	2 cut(s)	266, 2306
AccB7I	CCANNNNNTGG	3 cut(s)	164, 429, 3419
AccI	GTMKAC	2 cut(s)	1134, 1953
AccII	CGCG	3 cut(s)	326, 354, 2378
AccIII	TCCGGA	1 cut(s)	665
AciI	CCGC	9 cut(s)	13, 332, 635, 851, 899, 1942, 2045, 2256, 2376
AclWI	GGATC	8 cut(s)	185, 676, 735, 1862, 1884, 1910, 1923, 2678
AcoI	YGGCCR	1 cut(s)	333
AcuI	CTGAAG	6 cut(s)	575, 1079, 1167, 1560, 3235, 3320
AfaI	GTAC	6 cut(s)	502, 1074, 1438, 1882, 2755, 3274
AfiI	CCNNNNNNNGG	8 cut(s)	164, 429, 934, 968, 1160, 1775, 2613, 3419
AflIII	ACRYGT	1 cut(s)	2080
AhlI	ACTAGT	1 cut(s)	983
AjuI	GAANNNNNNNTTGG	6 cut(s)	147, 179, 1156, 1188, 1537, 1569
Alw26I	GTCTC	8 cut(s)	886, 1455, 1478, 1611, 2239, 2546, 2739, 3093
AlwI	GGATC	8 cut(s)	185, 676, 735, 1862, 1884, 1910, 1923, 2678
AlwNI	CAGNNNCTG	2 cut(s)	1667, 2111
Ama87I	CYCGRG	3 cut(s)	8, 416, 1488
Aor13HI	TCCGGA	1 cut(s)	665
AoxI	GGCC	7 cut(s)	333, 644, 1394, 1766, 2000, 2046, 2962
ArsI	GACNNNNNNTTYG	2 cut(s)	1306, 1338
AseI	ATTAAT	1 cut(s)	2898
Asp700I	GAANNNNTTC	2 cut(s)	588, 2625
AspLEI	GCGC	4 cut(s)	328, 354, 3284, 3325
AsuC2I	CCSGG	5 cut(s)	417, 418, 675, 2427, 2855
AsuHPI	GGTGA	8 cut(s)	55, 169, 839, 1515, 1611, 1839, 2208, 2773
AvaI	CYCGRG	3 cut(s)	8, 416, 1488
AxyI	CCTNAGG	3 cut(s)	933, 1527, 1872
BaeGI	GKGCMC	1 cut(s)	271
BaeI	ACNNNNGTAYC	2 cut(s)	2544, 2577
BamHI	GGATCC	1 cut(s)	1915
BanI	GGYRCC	2 cut(s)	266, 2306
BanII	GRGCYC	1 cut(s)	519
BceAI	ACGGC	3 cut(s)	548, 741, 1078
BciVI	GTATCC	2 cut(s)	2572, 3254
BclI	TGATCA	2 cut(s)	1840, 2490
BcnI	CCSGG	5 cut(s)	417, 418, 675, 2427, 2855
BcoDI	GTCTC	8 cut(s)	886, 1455, 1478, 1611, 2239, 2546, 2739, 3093
BcuI	ACTAGT	1 cut(s)	983
BfmI	CTRYAG	2 cut(s)	1455, 2512
BfuAI	ACCTGC	1 cut(s)	831
BfuI	GTATCC	2 cut(s)	2572, 3254
BglII	AGATCT	1 cut(s)	1201
BlpI	GCTNAGC	1 cut(s)	807
BmcAI	AGTACT	1 cut(s)	1438
BmeT110I	CYCGRG	3 cut(s)	8, 416, 1488
BoxI	GACNNNNGTC	2 cut(s)	1490, 2608
BplI	GAGNNNNNCTC	6 cut(s)	1074, 1106, 1384, 1416, 2213, 2245
BpmI	CTGGAG	3 cut(s)	564, 984, 3248
Bpu1102I	GCTNAGC	1 cut(s)	807
BpuEI	CTTGAG	3 cut(s)	931, 1386, 3421
BpuMI	CCSGG	5 cut(s)	417, 418, 675, 2427, 2855
BsaAI	YACGTR	1 cut(s)	2325
BsaBI	GATNNNNATC	2 cut(s)	1914, 2586
BsaI	GGTCTC	1 cut(s)	1611
BsaWI	WCCGGW	2 cut(s)	660, 665
Bsc4I	CCNNNNNNNGG	8 cut(s)	164, 429, 934, 968, 1160, 1775, 2613, 3419
Bse118I	RCCGGY	2 cut(s)	328, 631
Bse1I	ACTGG	8 cut(s)	59, 486, 1080, 1130, 1447, 1554, 1888, 2565
Bse21I	CCTNAGG	3 cut(s)	933, 1527, 1872
Bse3DI	GCAATG	3 cut(s)	1118, 1937, 2317
Bse8I	GATNNNNATC	2 cut(s)	1914, 2586
BseAI	TCCGGA	1 cut(s)	665
BseGI	GGATG	8 cut(s)	455, 580, 638, 943, 1537, 2654, 2832, 3079
BseJI	GATNNNNATC	2 cut(s)	1914, 2586
BseLI	CCNNNNNNNGG	8 cut(s)	164, 429, 934, 968, 1160, 1775, 2613, 3419
BseMI	GCAATG	3 cut(s)	1118, 1937, 2317
BseMII	CTCAG	6 cut(s)	480, 924, 1518, 1886, 2529, 3438
BseNI	ACTGG	8 cut(s)	59, 486, 1080, 1130, 1447, 1554, 1888, 2565
BseRI	GAGGAG	8 cut(s)	545, 641, 1389, 1510, 1613, 1780, 1791, 3053
BseSI	GKGCMC	1 cut(s)	271
BseYI	CCCAGC	2 cut(s)	927, 1418
BsgI	GTGCAG	2 cut(s)	856, 2893
Bsh1236I	CGCG	3 cut(s)	326, 354, 2378
BshFI	GGCC	7 cut(s)	335, 646, 1396, 1768, 2002, 2048, 2964
BshNI	GGYRCC	2 cut(s)	266, 2306
BsiHKCI	CYCGRG	3 cut(s)	8, 416, 1488
BslFI	GGGAC	4 cut(s)	433, 467, 1948, 3299
BslI	CCNNNNNNNGG	8 cut(s)	164, 429, 934, 968, 1160, 1775, 2613, 3419
BsmAI	GTCTC	8 cut(s)	886, 1455, 1478, 1611, 2239, 2546, 2739, 3093
BsmBI	CGTCTC	1 cut(s)	2239
BsmFI	GGGAC	4 cut(s)	433, 467, 1948, 3299
BsmI	GAATGC	1 cut(s)	3061
BsnI	GGCC	7 cut(s)	335, 646, 1396, 1768, 2002, 2048, 2964
Bso31I	GGTCTC	1 cut(s)	1611
BsoBI	CYCGRG	3 cut(s)	8, 416, 1488
Bsp1286I	GDGCHC	2 cut(s)	271, 519
Bsp13I	TCCGGA	1 cut(s)	665
Bsp1720I	GCTNAGC	1 cut(s)	807
Bsp19I	CCATGG	2 cut(s)	336, 1242
BspACI	CCGC	9 cut(s)	13, 332, 635, 851, 899, 1942, 2045, 2256, 2376
BspANI	GGCC	7 cut(s)	335, 646, 1396, 1768, 2002, 2048, 2964
BspCNI	CTCAG	6 cut(s)	481, 925, 1519, 1885, 2530, 3437
BspEI	TCCGGA	1 cut(s)	665
BspFNI	CGCG	3 cut(s)	326, 354, 2378
BspHI	TCATGA	2 cut(s)	2413, 2590
BspMI	ACCTGC	1 cut(s)	831
BspPI	GGATC	8 cut(s)	185, 676, 735, 1862, 1884, 1910, 1923, 2678
BspQI	GCTCTTC	1 cut(s)	2660
BspT107I	GGYRCC	2 cut(s)	266, 2306
BspTNI	GGTCTC	1 cut(s)	1611
BsrDI	GCAATG	3 cut(s)	1118, 1937, 2317
BsrFI	RCCGGY	2 cut(s)	328, 631
BsrI	ACTGG	8 cut(s)	59, 486, 1080, 1130, 1447, 1554, 1888, 2565
BssAI	RCCGGY	2 cut(s)	328, 631
BssNAI	GTATAC	1 cut(s)	1954
BssT1I	CCWWGG	2 cut(s)	336, 1242
Bst1107I	GTATAC	1 cut(s)	1954
BstAPI	GCANNNNNTGC	1 cut(s)	3331
BstBAI	YACGTR	1 cut(s)	2325
BstC8I	GCNNGC	9 cut(s)	330, 633, 830, 1819, 2258, 3059, 3145, 3332, 3363
BstDSI	CCRYGG	3 cut(s)	336, 564, 1242
BstEII	GGTNACC	1 cut(s)	3175
BstF5I	GGATG	8 cut(s)	455, 580, 638, 943, 1537, 2654, 2832, 3079
BstFNI	CGCG	3 cut(s)	326, 354, 2378
BstHHI	GCGC	4 cut(s)	328, 354, 3284, 3325
BstMAI	GTCTC	8 cut(s)	886, 1455, 1478, 1611, 2239, 2546, 2739, 3093
BstNSI	RCATGY	1 cut(s)	1359
BstPAI	GACNNNNGTC	2 cut(s)	1490, 2608
BstPI	GGTNACC	1 cut(s)	3175
BstSFI	CTRYAG	2 cut(s)	1455, 2512
BstSLI	GKGCMC	1 cut(s)	271
BstUI	CGCG	3 cut(s)	326, 354, 2378
BstX2I	RGATCY	5 cut(s)	668, 727, 1201, 1915, 2670
BstXI	CCANNNNNNTGG	3 cut(s)	444, 481, 1373
BstYI	RGATCY	5 cut(s)	668, 727, 1201, 1915, 2670
BstZ17I	GTATAC	1 cut(s)	1954
Bsu36I	CCTNAGG	3 cut(s)	933, 1527, 1872
BsuI	GTATCC	2 cut(s)	2572, 3254
BsuRI	GGCC	7 cut(s)	335, 646, 1396, 1768, 2002, 2048, 2964
BtgI	CCRYGG	3 cut(s)	336, 564, 1242
BtgZI	GCGATG	3 cut(s)	266, 737, 3233
BtsCI	GGATG	8 cut(s)	455, 580, 638, 943, 1537, 2654, 2832, 3079
BtsI	GCAGTG	2 cut(s)	839, 2923
BtsIMutI	CAGTG	9 cut(s)	479, 486, 839, 1342, 1637, 1665, 2572, 2733, 2923
BveI	ACCTGC	1 cut(s)	831
Cac8I	GCNNGC	9 cut(s)	330, 633, 830, 1819, 2258, 3059, 3145, 3332, 3363
CaiI	CAGNNNCTG	2 cut(s)	1667, 2111
CciI	TCATGA	2 cut(s)	2413, 2590
CfoI	GCGC	4 cut(s)	328, 354, 3284, 3325
Cfr10I	RCCGGY	2 cut(s)	328, 631
Cfr9I	CCCGGG	1 cut(s)	416
CpoI	CGGWCCG	1 cut(s)	663
CseI	GACGC	2 cut(s)	332, 3329
CsiI	ACCWGGT	2 cut(s)	2070, 2956
Csp6I	GTAC	6 cut(s)	501, 1073, 1437, 1881, 2754, 3273
CspCI	CAANNNNNGTGG	2 cut(s)	967, 1002
CspI	CGGWCCG	1 cut(s)	663
CviQI	GTAC	6 cut(s)	501, 1073, 1437, 1881, 2754, 3273
DraI	TTTAAA	2 cut(s)	1170, 1900
EaeI	YGGCCR	1 cut(s)	333
Eco130I	CCWWGG	2 cut(s)	336, 1242
Eco147I	AGGCCT	2 cut(s)	1396, 2002
Eco24I	GRGCYC	1 cut(s)	519
Eco31I	GGTCTC	1 cut(s)	1611
Eco57I	CTGAAG	6 cut(s)	575, 1079, 1167, 1560, 3235, 3320
Eco81I	CCTNAGG	3 cut(s)	933, 1527, 1872
Eco88I	CYCGRG	3 cut(s)	8, 416, 1488
Eco91I	GGTNACC	1 cut(s)	3175
EcoO109I	RGGNCCY	1 cut(s)	3313
EcoO65I	GGTNACC	1 cut(s)	3175
EcoRI	GAATTC	1 cut(s)	1861
EcoT14I	CCWWGG	2 cut(s)	336, 1242
EcoT22I	ATGCAT	2 cut(s)	2422, 2933
EcoT38I	GRGCYC	1 cut(s)	519
ErhI	CCWWGG	2 cut(s)	336, 1242
Esp3I	CGTCTC	1 cut(s)	2239
FalI	AAGNNNNNCTT	4 cut(s)	2659, 2691, 3318, 3350
FaqI	GGGAC	4 cut(s)	433, 467, 1948, 3299
FauI	CCCGC	3 cut(s)	858, 892, 2249
FauNDI	CATATG	2 cut(s)	3094, 3213
FbaI	TGATCA	2 cut(s)	1840, 2490
FblI	GTMKAC	2 cut(s)	1134, 1953
FokI	GGATG	8 cut(s)	462, 587, 625, 950, 1544, 2661, 2839, 3086
FriOI	GRGCYC	1 cut(s)	519
FspI	TGCGCA	2 cut(s)	3283, 3324
GlaI	GCGC	4 cut(s)	327, 353, 3283, 3324
GsaI	CCCAGC	2 cut(s)	931, 1422
GsuI	CTGGAG	3 cut(s)	564, 984, 3248
HaeIII	GGCC	7 cut(s)	335, 646, 1396, 1768, 2002, 2048, 2964
HgaI	GACGC	2 cut(s)	332, 3329
HhaI	GCGC	4 cut(s)	328, 354, 3284, 3325
Hin6I	GCGC	4 cut(s)	326, 352, 3282, 3323
HinP1I	GCGC	4 cut(s)	326, 352, 3282, 3323
HincII	GTYRAC	2 cut(s)	1006, 1353
HindII	GTYRAC	2 cut(s)	1006, 1353
HindIII	AAGCTT	2 cut(s)	1179, 2401
HpaI	GTTAAC	1 cut(s)	1353
HphI	GGTGA	8 cut(s)	55, 169, 839, 1515, 1611, 1839, 2208, 2773
Hpy166II	GTNNAC	8 cut(s)	1006, 1031, 1135, 1353, 1541, 1711, 1954, 2216
Hpy8I	GTNNAC	8 cut(s)	1006, 1031, 1135, 1353, 1541, 1711, 1954, 2216
Hpy99I	CGWCG	4 cut(s)	128, 131, 326, 1072
HpyAV	CCTTC	8 cut(s)	97, 520, 599, 882, 912, 1103, 1293, 2124
HpyCH4IV	ACGT	2 cut(s)	2080, 2324
HpySE526I	ACGT	2 cut(s)	2080, 2324
HspAI	GCGC	4 cut(s)	326, 352, 3282, 3323
KflI	GGGWCCC	1 cut(s)	3313
Kpn2I	TCCGGA	1 cut(s)	665
KroI	GCCGGC	2 cut(s)	328, 631
KroNI	GCCGGC	2 cut(s)	330, 633
Ksp22I	TGATCA	2 cut(s)	1840, 2490
KspAI	GTTAAC	1 cut(s)	1353
LguI	GCTCTTC	1 cut(s)	2660
LmnI	GCTCC	9 cut(s)	628, 1095, 1523, 1778, 1793, 2053, 3223, 3229, 3436
MabI	ACCWGGT	2 cut(s)	2070, 2956
MaeII	ACGT	2 cut(s)	2080, 2324
MfeI	CAATTG	1 cut(s)	3186
MflI	RGATCY	5 cut(s)	668, 727, 1201, 1915, 2670
MhlI	GDGCHC	2 cut(s)	271, 519
MlyI	GAGTC	8 cut(s)	319, 784, 1480, 1500, 1712, 1930, 2543, 2825
MmeI	TCCRAC	4 cut(s)	63, 1656, 2101, 2335
Mph1103I	ATGCAT	2 cut(s)	2422, 2933
MreI	CGCCGGCG	1 cut(s)	328
MroI	TCCGGA	1 cut(s)	665
MroNI	GCCGGC	2 cut(s)	328, 631
MroXI	GAANNNNTTC	2 cut(s)	588, 2625
MseI	TTAA	9 cut(s)	90, 204, 1169, 1352, 1899, 2093, 2225, 2849, 2898
MslI	CAYNNNNRTG	5 cut(s)	491, 2172, 2327, 2453, 2595
MspA1I	CMGCKG	5 cut(s)	429, 595, 1373, 1418, 2845
MssI	GTTTAAAC	1 cut(s)	1900
MunI	CAATTG	1 cut(s)	3186
Mva1269I	GAATGC	1 cut(s)	3061
MvnI	CGCG	3 cut(s)	326, 354, 2378
NaeI	GCCGGC	2 cut(s)	330, 633
NciI	CCSGG	5 cut(s)	417, 418, 675, 2427, 2855
NcoI	CCATGG	2 cut(s)	336, 1242
NdeI	CATATG	2 cut(s)	3094, 3213
NgoMIV	GCCGGC	2 cut(s)	328, 631
NmeAIII	GCCGAG	1 cut(s)	426
NmuCI	GTSAC	5 cut(s)	61, 776, 1331, 1617, 2918
NsbI	TGCGCA	2 cut(s)	3283, 3324
NsiI	ATGCAT	2 cut(s)	2422, 2933
NspI	RCATGY	1 cut(s)	1359
PaeR7I	CTCGAG	1 cut(s)	1488
PagI	TCATGA	2 cut(s)	2413, 2590
PceI	AGGCCT	2 cut(s)	1396, 2002
PciSI	GCTCTTC	1 cut(s)	2660
PctI	GAATGC	1 cut(s)	3061
PdiI	GCCGGC	2 cut(s)	330, 633
PdmI	GAANNNNTTC	2 cut(s)	588, 2625
PfeI	GAWTC	9 cut(s)	245, 598, 1099, 1156, 1463, 2108, 2182, 2314, 2524
PflFI	GACNNNGTC	1 cut(s)	1667
PflMI	CCANNNNNTGG	3 cut(s)	164, 429, 3419
PleI	GAGTC	8 cut(s)	318, 783, 1480, 1499, 1712, 1929, 2542, 2824
PmeI	GTTTAAAC	1 cut(s)	1900
PpsI	GAGTC	8 cut(s)	318, 783, 1480, 1499, 1712, 1929, 2542, 2824
Ppu21I	YACGTR	1 cut(s)	2325
PpuMI	RGGWCCY	1 cut(s)	3313
PshAI	GACNNNNGTC	2 cut(s)	1490, 2608
PshBI	ATTAAT	1 cut(s)	2898
Psp5II	RGGWCCY	1 cut(s)	3313
PspEI	GGTNACC	1 cut(s)	3175
PspFI	CCCAGC	2 cut(s)	927, 1418
PspPPI	RGGWCCY	1 cut(s)	3313
PspXI	VCTCGAGB	1 cut(s)	1488
PstNI	CAGNNNCTG	2 cut(s)	1667, 2111
PsuI	RGATCY	5 cut(s)	668, 727, 1201, 1915, 2670
PsyI	GACNNNGTC	1 cut(s)	1667
PvuII	CAGCTG	5 cut(s)	429, 595, 1373, 1418, 2845
RsaI	GTAC	6 cut(s)	502, 1074, 1438, 1882, 2755, 3274
RsaNI	GTAC	6 cut(s)	501, 1073, 1437, 1881, 2754, 3273
RseI	CAYNNNNRTG	5 cut(s)	491, 2172, 2327, 2453, 2595
Rsr2I	CGGWCCG	1 cut(s)	663
RsrII	CGGWCCG	1 cut(s)	663
SapI	GCTCTTC	1 cut(s)	2660
SaqAI	TTAA	9 cut(s)	90, 204, 1169, 1352, 1899, 2093, 2225, 2849, 2898
ScaI	AGTACT	1 cut(s)	1438
SchI	GAGTC	8 cut(s)	319, 784, 1480, 1500, 1712, 1930, 2543, 2825
SduI	GDGCHC	2 cut(s)	271, 519
SexAI	ACCWGGT	2 cut(s)	2070, 2956
SfcI	CTRYAG	2 cut(s)	1455, 2512
Sfr274I	CTCGAG	1 cut(s)	1488
SgrAI	CRCCGGYG	1 cut(s)	328
SlaI	CTCGAG	1 cut(s)	1488
SmaI	CCCGGG	1 cut(s)	418
SmiI	ATTTAAAT	1 cut(s)	1170
SmiMI	CAYNNNNRTG	5 cut(s)	491, 2172, 2327, 2453, 2595
SmlI	CTYRAG	4 cut(s)	946, 1401, 1488, 3400
SmoI	CTYRAG	4 cut(s)	946, 1401, 1488, 3400
SpeI	ACTAGT	1 cut(s)	983
SseBI	AGGCCT	2 cut(s)	1396, 2002
SsiI	CCGC	9 cut(s)	13, 332, 635, 851, 899, 1942, 2045, 2256, 2376
SspI	AATATT	1 cut(s)	288
StuI	AGGCCT	2 cut(s)	1396, 2002
StyI	CCWWGG	2 cut(s)	336, 1242
SwaI	ATTTAAAT	1 cut(s)	1170
TaiI	ACGT	2 cut(s)	2083, 2327
TaqI	TCGA	4 cut(s)	189, 308, 1489, 2793
TatI	WGTACW	2 cut(s)	1436, 2753
TauI	GCSGC	4 cut(s)	16, 335, 638, 2048
TfiI	GAWTC	9 cut(s)	245, 598, 1099, 1156, 1463, 2108, 2182, 2314, 2524
Tru1I	TTAA	9 cut(s)	90, 204, 1169, 1352, 1899, 2093, 2225, 2849, 2898
Tru9I	TTAA	9 cut(s)	90, 204, 1169, 1352, 1899, 2093, 2225, 2849, 2898
TscAI	CASTG	9 cut(s)	486, 493, 839, 1342, 1644, 1672, 2572, 2740, 2923
TseFI	GTSAC	5 cut(s)	61, 776, 1331, 1617, 2918
Tsp45I	GTSAC	5 cut(s)	61, 776, 1331, 1617, 2918
TspGWI	ACGGA	2 cut(s)	1965, 2221
TspMI	CCCGGG	1 cut(s)	416
TspRI	CASTG	9 cut(s)	486, 493, 839, 1342, 1644, 1672, 2572, 2740, 2923
Tth111I	GACNNNGTC	1 cut(s)	1667
Van91I	CCANNNNNTGG	3 cut(s)	164, 429, 3419
VspI	ATTAAT	1 cut(s)	2898
XbaI	TCTAGA	1 cut(s)	2773
XceI	RCATGY	1 cut(s)	1359
XhoI	CTCGAG	1 cut(s)	1488
XmaI	CCCGGG	1 cut(s)	416
XmiI	GTMKAC	2 cut(s)	1134, 1953
XmnI	GAANNNNTTC	2 cut(s)	588, 2625
ZrmI	AGTACT	1 cut(s)	1438
Zsp2I	ATGCAT	2 cut(s)	2422, 2933

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.