Squamosa promoter-binding-like protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G20980 AT1G76580 AT1G76580 AT1G76580 |
| fragaria_vesca | FvH4_5g26510 FvH4_5g26510 FvH4_5g26510 FvH4_5g26510 |
| malus_domestica | MD00G1031600.v1.1 MD06G1001500.v1.1 |
| prunus_persica | Prupe.5G002300_v2.0.a1 |
| pyrus_communis | pycom06g00160 pycom16g26290 |
| rosa_chinensis | RchiOBHm_Chr7g0217411 |
| rosa_laevigata | RLG00000002479 |
| rosa_multiflora | Rmu_sc0000145.1_g000013 |
| rosa_roxburghii | Rroxscaffold_3G00242100 |
| rosa_rugosa | Rorug07G0169000 |
| rosa_samantha | Rh7AG308600 Rh7BG299300 Rh7CG328000 Rh7DG307900 |
| rosa_wichuraiana | Rw7G026170 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 564, 1097 |
| AccB1I | GGYRCC | 1 cut(s) | 2039 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 419, 3161 |
| AccBSI | CCGCTC | 1 cut(s) | 402 |
| AccI | GTMKAC | 1 cut(s) | 619 |
| AccII | CGCG | 4 cut(s) | 96, 148, 1224, 2989 |
| AciI | CCGC | 8 cut(s) | 146, 159, 308, 400, 1149, 1274, 1541, 2777 |
| AclI | AACGTT | 1 cut(s) | 201 |
| AclWI | GGATC | 8 cut(s) | 415, 1595, 1617, 1643, 1656, 2101, 2414, 3016 |
| AcoI | YGGCCR | 1 cut(s) | 16 |
| AcsI | RAATTY | 7 cut(s) | 724, 847, 1594, 2453, 2530, 2803, 3190 |
| AcuI | CTGAAG | 3 cut(s) | 812, 1044, 3062 |
| AfaI | GTAC | 4 cut(s) | 807, 993, 1171, 2986 |
| AhlI | ACTAGT | 1 cut(s) | 1172 |
| AjiI | CACGTC | 1 cut(s) | 2346 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1270, 1302, 2795, 2827 |
| Alw21I | GWGCWC | 2 cut(s) | 1681, 3067 |
| Alw26I | GTCTC | 6 cut(s) | 619, 693, 1188, 1344, 2254, 2835 |
| AlwI | GGATC | 8 cut(s) | 415, 1595, 1617, 1643, 1656, 2101, 2414, 3016 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1844 |
| Ama87I | CYCGRG | 1 cut(s) | 55 |
| AoxI | GGCC | 5 cut(s) | 16, 58, 383, 1733, 2339 |
| ApoI | RAATTY | 7 cut(s) | 724, 847, 1594, 2453, 2530, 2803, 3190 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2504, 2536 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 330 |
| AspLEI | GCGC | 4 cut(s) | 96, 150, 1514, 3084 |
| AspS9I | GGNCC | 6 cut(s) | 58, 384, 397, 1109, 2340, 2696 |
| AsuC2I | CCSGG | 3 cut(s) | 349, 382, 2597 |
| AsuHPI | GGTGA | 5 cut(s) | 572, 1248, 1572, 2236, 2552 |
| AsuNHI | GCTAGC | 2 cut(s) | 745, 1520 |
| AvaI | CYCGRG | 1 cut(s) | 55 |
| AvaII | GGWCC | 3 cut(s) | 397, 1109, 2696 |
| AxyI | CCTNAGG | 1 cut(s) | 1605 |
| BalI | TGGCCA | 1 cut(s) | 18 |
| BamHI | GGATCC | 1 cut(s) | 1648 |
| BanI | GGYRCC | 1 cut(s) | 2039 |
| BanII | GRGCYC | 3 cut(s) | 116, 375, 2430 |
| BauI | CACGAG | 1 cut(s) | 1464 |
| BbsI | GAAGAC | 1 cut(s) | 12 |
| Bbv12I | GWGCWC | 2 cut(s) | 1681, 3067 |
| BccI | CCATC | 6 cut(s) | 492, 1717, 1901, 2531, 2537, 2617 |
| BceAI | ACGGC | 4 cut(s) | 698, 2230, 2354, 2430 |
| BciVI | GTATCC | 1 cut(s) | 700 |
| BcnI | CCSGG | 3 cut(s) | 349, 382, 2597 |
| BcoDI | GTCTC | 6 cut(s) | 619, 693, 1188, 1344, 2254, 2835 |
| BcuI | ACTAGT | 1 cut(s) | 1172 |
| BfaI | CTAG | 9 cut(s) | 746, 1007, 1173, 1293, 1455, 1521, 1587, 2171, 2510 |
| BfmI | CTRYAG | 3 cut(s) | 753, 1359, 2248 |
| BfoI | RGCGCY | 2 cut(s) | 1515, 3085 |
| BfuAI | ACCTGC | 2 cut(s) | 564, 1097 |
| BfuI | GTATCC | 1 cut(s) | 700 |
| BglII | AGATCT | 2 cut(s) | 460, 934 |
| BmcAI | AGTACT | 2 cut(s) | 807, 1171 |
| Bme18I | GGWCC | 3 cut(s) | 397, 1109, 2696 |
| BmeT110I | CYCGRG | 1 cut(s) | 55 |
| BmgBI | CACGTC | 1 cut(s) | 2346 |
| BmgT120I | GGNCC | 6 cut(s) | 58, 384, 397, 1109, 2340, 2696 |
| BmiI | GGNNCC | 8 cut(s) | 115, 372, 398, 1111, 1650, 2041, 3057, 3151 |
| BmrI | ACTGGG | 1 cut(s) | 202 |
| BmtI | GCTAGC | 2 cut(s) | 749, 1524 |
| BmuI | ACTGGG | 1 cut(s) | 202 |
| BpiI | GAAGAC | 1 cut(s) | 12 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 807, 839, 1946, 1978 |
| BpmI | CTGGAG | 4 cut(s) | 396, 717, 1954, 2990 |
| Bpu10I | CCTNAGC | 1 cut(s) | 3066 |
| BpuEI | CTTGAG | 2 cut(s) | 2288, 3163 |
| BpuMI | CCSGG | 3 cut(s) | 349, 382, 2597 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1647, 2322 |
| BsaI | GGTCTC | 1 cut(s) | 1344 |
| BsaWI | WCCGGW | 1 cut(s) | 2221 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 98, 128, 1927, 1957 |
| Bse118I | RCCGGY | 4 cut(s) | 60, 76, 489, 642 |
| Bse1I | ACTGG | 7 cut(s) | 176, 197, 228, 813, 1180, 1287, 1621 |
| Bse21I | CCTNAGG | 1 cut(s) | 1605 |
| Bse3DI | GCAATG | 4 cut(s) | 1041, 1670, 2050, 3033 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1647, 2322 |
| BseGI | GGATG | 5 cut(s) | 676, 2574, 2580, 2752, 2821 |
| BseJI | GATNNNNATC | 2 cut(s) | 1647, 2322 |
| BseMI | GCAATG | 4 cut(s) | 1041, 1670, 2050, 3033 |
| BseMII | CTCAG | 7 cut(s) | 222, 1251, 1401, 1619, 2455, 2966, 3080 |
| BseNI | ACTGG | 7 cut(s) | 176, 197, 228, 813, 1180, 1287, 1621 |
| BseRI | GAGGAG | 2 cut(s) | 383, 3064 |
| BseYI | CCCAGC | 2 cut(s) | 632, 1151 |
| BsgI | GTGCAG | 1 cut(s) | 589 |
| Bsh1236I | CGCG | 4 cut(s) | 96, 148, 1224, 2989 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1329 |
| BshFI | GGCC | 5 cut(s) | 18, 60, 385, 1735, 2341 |
| BshNI | GGYRCC | 1 cut(s) | 2039 |
| BsiEI | CGRYCG | 1 cut(s) | 1329 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1681, 3067 |
| BsiHKCI | CYCGRG | 1 cut(s) | 55 |
| BsiSI | CCGG | 8 cut(s) | 61, 77, 348, 382, 490, 643, 2222, 2596 |
| BslFI | GGGAC | 4 cut(s) | 203, 209, 1095, 1954 |
| BsmAI | GTCTC | 6 cut(s) | 619, 693, 1188, 1344, 2254, 2835 |
| BsmBI | CGTCTC | 1 cut(s) | 693 |
| BsmFI | GGGAC | 4 cut(s) | 203, 209, 1095, 1954 |
| BsmI | GAATGC | 1 cut(s) | 475 |
| BsnI | GGCC | 5 cut(s) | 18, 60, 385, 1735, 2341 |
| Bso31I | GGTCTC | 1 cut(s) | 1344 |
| BsoBI | CYCGRG | 1 cut(s) | 55 |
| Bsp1286I | GDGCHC | 5 cut(s) | 116, 375, 1681, 2430, 3067 |
| Bsp19I | CCATGG | 1 cut(s) | 1188 |
| BspACI | CCGC | 8 cut(s) | 146, 159, 308, 400, 1149, 1274, 1541, 2777 |
| BspANI | GGCC | 5 cut(s) | 18, 60, 385, 1735, 2341 |
| BspCNI | CTCAG | 7 cut(s) | 223, 1252, 1402, 1618, 2454, 2965, 3079 |
| BspFNI | CGCG | 4 cut(s) | 96, 148, 1224, 2989 |
| BspHI | TCATGA | 1 cut(s) | 2149 |
| BspLI | GGNNCC | 8 cut(s) | 115, 372, 398, 1111, 1650, 2041, 3057, 3151 |
| BspMI | ACCTGC | 2 cut(s) | 564, 1097 |
| BspOI | GCTAGC | 2 cut(s) | 749, 1524 |
| BspPI | GGATC | 8 cut(s) | 415, 1595, 1617, 1643, 1656, 2101, 2414, 3016 |
| BspQI | GCTCTTC | 1 cut(s) | 1258 |
| BspT107I | GGYRCC | 1 cut(s) | 2039 |
| BspTNI | GGTCTC | 1 cut(s) | 1344 |
| BsrBI | CCGCTC | 1 cut(s) | 402 |
| BsrDI | GCAATG | 4 cut(s) | 1041, 1670, 2050, 3033 |
| BsrFI | RCCGGY | 4 cut(s) | 60, 76, 489, 642 |
| BsrI | ACTGG | 7 cut(s) | 176, 197, 228, 813, 1180, 1287, 1621 |
| BssAI | RCCGGY | 4 cut(s) | 60, 76, 489, 642 |
| BssSI | CACGAG | 1 cut(s) | 1464 |
| BssT1I | CCWWGG | 2 cut(s) | 474, 1188 |
| Bst2BI | CACGAG | 1 cut(s) | 1464 |
| Bst6I | CTCTTC | 6 cut(s) | 602, 1258, 1312, 1379, 2511, 2721 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 872 |
| BstDEI | CTNAG | 9 cut(s) | 231, 836, 1080, 1260, 1410, 1605, 2441, 2952, 3066 |
| BstDSI | CCRYGG | 1 cut(s) | 1188 |
| BstF5I | GGATG | 5 cut(s) | 676, 2574, 2580, 2752, 2821 |
| BstFNI | CGCG | 4 cut(s) | 96, 148, 1224, 2989 |
| BstH2I | RGCGCY | 2 cut(s) | 1515, 3085 |
| BstHHI | GCGC | 4 cut(s) | 96, 150, 1514, 3084 |
| BstMAI | GTCTC | 6 cut(s) | 619, 693, 1188, 1344, 2254, 2835 |
| BstMCI | CGRYCG | 1 cut(s) | 1329 |
| BstNSI | RCATGY | 2 cut(s) | 1480, 2301 |
| BstSFI | CTRYAG | 3 cut(s) | 753, 1359, 2248 |
| BstUI | CGCG | 4 cut(s) | 96, 148, 1224, 2989 |
| BstV2I | GAAGAC | 1 cut(s) | 12 |
| BstX2I | RGATCY | 5 cut(s) | 407, 460, 934, 1648, 2406 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 223, 1106 |
| BstYI | RGATCY | 5 cut(s) | 407, 460, 934, 1648, 2406 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1605 |
| BsuI | GTATCC | 1 cut(s) | 700 |
| BsuRI | GGCC | 5 cut(s) | 18, 60, 385, 1735, 2341 |
| BtgI | CCRYGG | 1 cut(s) | 1188 |
| BtgZI | GCGATG | 2 cut(s) | 84, 470 |
| BtrI | CACGTC | 1 cut(s) | 2346 |
| BtsCI | GGATG | 5 cut(s) | 676, 2574, 2580, 2752, 2821 |
| BtsI | GCAGTG | 4 cut(s) | 303, 572, 1069, 2665 |
| BtsIMutI | CAGTG | 8 cut(s) | 221, 303, 572, 1069, 1075, 1614, 2469, 2665 |
| BveI | ACCTGC | 2 cut(s) | 564, 1097 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1844 |
| CciI | TCATGA | 1 cut(s) | 2149 |
| CfoI | GCGC | 4 cut(s) | 96, 150, 1514, 3084 |
| Cfr10I | RCCGGY | 4 cut(s) | 60, 76, 489, 642 |
| Cfr13I | GGNCC | 6 cut(s) | 58, 384, 397, 1109, 2340, 2696 |
| CseI | GACGC | 1 cut(s) | 236 |
| CsiI | ACCWGGT | 1 cut(s) | 2698 |
| Csp6I | GTAC | 4 cut(s) | 806, 992, 1170, 2985 |
| CviQI | GTAC | 4 cut(s) | 806, 992, 1170, 2985 |
| DdeI | CTNAG | 9 cut(s) | 231, 836, 1080, 1260, 1410, 1605, 2441, 2952, 3066 |
| DraI | TTTAAA | 2 cut(s) | 903, 1633 |
| EaeI | YGGCCR | 1 cut(s) | 16 |
| Eam1104I | CTCTTC | 6 cut(s) | 602, 1258, 1312, 1379, 2511, 2721 |
| EarI | CTCTTC | 6 cut(s) | 602, 1258, 1312, 1379, 2511, 2721 |
| Eco130I | CCWWGG | 2 cut(s) | 474, 1188 |
| Eco147I | AGGCCT | 1 cut(s) | 1735 |
| Eco24I | GRGCYC | 3 cut(s) | 116, 375, 2430 |
| Eco31I | GGTCTC | 1 cut(s) | 1344 |
| Eco47I | GGWCC | 3 cut(s) | 397, 1109, 2696 |
| Eco57I | CTGAAG | 3 cut(s) | 812, 1044, 3062 |
| Eco81I | CCTNAGG | 1 cut(s) | 1605 |
| Eco88I | CYCGRG | 1 cut(s) | 55 |
| EcoRI | GAATTC | 2 cut(s) | 1594, 2803 |
| EcoT14I | CCWWGG | 2 cut(s) | 474, 1188 |
| EcoT22I | ATGCAT | 1 cut(s) | 2158 |
| EcoT38I | GRGCYC | 3 cut(s) | 116, 375, 2430 |
| ErhI | CCWWGG | 2 cut(s) | 474, 1188 |
| Esp3I | CGTCTC | 1 cut(s) | 693 |
| FaqI | GGGAC | 4 cut(s) | 203, 209, 1095, 1954 |
| FauI | CCCGC | 2 cut(s) | 1281, 2784 |
| FauNDI | CATATG | 1 cut(s) | 2836 |
| FblI | GTMKAC | 1 cut(s) | 619 |
| FokI | GGATG | 5 cut(s) | 683, 2567, 2581, 2759, 2828 |
| FriOI | GRGCYC | 3 cut(s) | 116, 375, 2430 |
| FspBI | CTAG | 9 cut(s) | 746, 1007, 1173, 1293, 1455, 1521, 1587, 2171, 2510 |
| GlaI | GCGC | 4 cut(s) | 95, 149, 1513, 3083 |
| GsaI | CCCAGC | 2 cut(s) | 636, 1155 |
| GsuI | CTGGAG | 4 cut(s) | 396, 717, 1954, 2990 |
| HaeII | RGCGCY | 2 cut(s) | 1515, 3085 |
| HaeIII | GGCC | 5 cut(s) | 18, 60, 385, 1735, 2341 |
| HapII | CCGG | 8 cut(s) | 61, 77, 348, 382, 490, 643, 2222, 2596 |
| HgaI | GACGC | 1 cut(s) | 236 |
| HhaI | GCGC | 4 cut(s) | 96, 150, 1514, 3084 |
| Hin6I | GCGC | 4 cut(s) | 94, 148, 1512, 3082 |
| HinP1I | GCGC | 4 cut(s) | 94, 148, 1512, 3082 |
| HincII | GTYRAC | 4 cut(s) | 739, 979, 1086, 2629 |
| HindII | GTYRAC | 4 cut(s) | 739, 979, 1086, 2629 |
| HindIII | AAGCTT | 1 cut(s) | 282 |
| HpaII | CCGG | 8 cut(s) | 61, 77, 348, 382, 490, 643, 2222, 2596 |
| HphI | GGTGA | 5 cut(s) | 572, 1248, 1572, 2236, 2552 |
| Hpy166II | GTNNAC | 8 cut(s) | 620, 739, 764, 979, 1086, 2438, 2629, 2891 |
| Hpy8I | GTNNAC | 8 cut(s) | 620, 739, 764, 979, 1086, 2438, 2629, 2891 |
| HpyAV | CCTTC | 7 cut(s) | 341, 645, 836, 1353, 1593, 1790, 3097 |
| HpyCH4IV | ACGT | 4 cut(s) | 9, 183, 201, 2345 |
| HpyF3I | CTNAG | 9 cut(s) | 231, 836, 1080, 1260, 1410, 1605, 2441, 2952, 3066 |
| HpySE526I | ACGT | 4 cut(s) | 9, 183, 201, 2345 |
| HspAI | GCGC | 4 cut(s) | 94, 148, 1512, 3082 |
| KroI | GCCGGC | 2 cut(s) | 76, 489 |
| KroNI | GCCGGC | 2 cut(s) | 78, 491 |
| LguI | GCTCTTC | 1 cut(s) | 1258 |
| LmnI | GCTCC | 9 cut(s) | 119, 370, 828, 1529, 1786, 2965, 2971, 3155, 3178 |
| MabI | ACCWGGT | 1 cut(s) | 2698 |
| MaeI | CTAG | 9 cut(s) | 746, 1007, 1173, 1293, 1455, 1521, 1587, 2171, 2510 |
| MaeII | ACGT | 4 cut(s) | 9, 183, 201, 2345 |
| MaeIII | GTNAC | 8 cut(s) | 673, 1064, 1175, 1472, 2069, 2660, 2917, 2923 |
| MbiI | CCGCTC | 1 cut(s) | 402 |
| MfeI | CAATTG | 2 cut(s) | 1690, 2928 |
| MflI | RGATCY | 5 cut(s) | 407, 460, 934, 1648, 2406 |
| MhlI | GDGCHC | 5 cut(s) | 116, 375, 1681, 2430, 3067 |
| MlsI | TGGCCA | 1 cut(s) | 18 |
| MluNI | TGGCCA | 1 cut(s) | 18 |
| MlyI | GAGTC | 5 cut(s) | 1445, 1456, 2256, 2279, 2567 |
| MmeI | TCCRAC | 2 cut(s) | 1349, 1725 |
| Mox20I | TGGCCA | 1 cut(s) | 18 |
| Mph1103I | ATGCAT | 1 cut(s) | 2158 |
| MroNI | GCCGGC | 2 cut(s) | 76, 489 |
| MroXI | GAANNNNTTC | 1 cut(s) | 330 |
| MscI | TGGCCA | 1 cut(s) | 18 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1905, 2189 |
| Msp20I | TGGCCA | 1 cut(s) | 18 |
| MspA1I | CMGCKG | 2 cut(s) | 1106, 1151 |
| MspI | CCGG | 8 cut(s) | 61, 77, 348, 382, 490, 643, 2222, 2596 |
| MunI | CAATTG | 2 cut(s) | 1690, 2928 |
| Mva1269I | GAATGC | 1 cut(s) | 475 |
| MvnI | CGCG | 4 cut(s) | 96, 148, 1224, 2989 |
| NaeI | GCCGGC | 2 cut(s) | 78, 491 |
| NciI | CCSGG | 3 cut(s) | 349, 382, 2597 |
| NcoI | CCATGG | 1 cut(s) | 1188 |
| NdeI | CATATG | 1 cut(s) | 2836 |
| NgoMIV | GCCGGC | 2 cut(s) | 76, 489 |
| NheI | GCTAGC | 2 cut(s) | 745, 1520 |
| NlaIV | GGNNCC | 8 cut(s) | 115, 372, 398, 1111, 1650, 2041, 3057, 3151 |
| NmuCI | GTSAC | 3 cut(s) | 1064, 2660, 2923 |
| NsiI | ATGCAT | 1 cut(s) | 2158 |
| NspI | RCATGY | 2 cut(s) | 1480, 2301 |
| PagI | TCATGA | 1 cut(s) | 2149 |
| PceI | AGGCCT | 1 cut(s) | 1735 |
| PciSI | GCTCTTC | 1 cut(s) | 1258 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 207 |
| PctI | GAATGC | 1 cut(s) | 475 |
| PdiI | GCCGGC | 2 cut(s) | 78, 491 |
| PdmI | GAANNNNTTC | 1 cut(s) | 330 |
| PfeI | GAWTC | 9 cut(s) | 175, 207, 508, 832, 1196, 1841, 1915, 2047, 2991 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 419, 3161 |
| PleI | GAGTC | 5 cut(s) | 1445, 1456, 2256, 2278, 2566 |
| PpsI | GAGTC | 5 cut(s) | 1445, 1456, 2256, 2278, 2566 |
| Psp1406I | AACGTT | 1 cut(s) | 201 |
| PspFI | CCCAGC | 2 cut(s) | 632, 1151 |
| PspN4I | GGNNCC | 8 cut(s) | 115, 372, 398, 1111, 1650, 2041, 3057, 3151 |
| PspPI | GGNCC | 6 cut(s) | 58, 384, 397, 1109, 2340, 2696 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1844 |
| PsuI | RGATCY | 5 cut(s) | 407, 460, 934, 1648, 2406 |
| PvuII | CAGCTG | 1 cut(s) | 1106 |
| RsaI | GTAC | 4 cut(s) | 807, 993, 1171, 2986 |
| RsaNI | GTAC | 4 cut(s) | 806, 992, 1170, 2985 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1905, 2189 |
| SapI | GCTCTTC | 1 cut(s) | 1258 |
| Sau96I | GGNCC | 6 cut(s) | 58, 384, 397, 1109, 2340, 2696 |
| ScaI | AGTACT | 2 cut(s) | 807, 1171 |
| SchI | GAGTC | 5 cut(s) | 1445, 1456, 2256, 2279, 2567 |
| SduI | GDGCHC | 5 cut(s) | 116, 375, 1681, 2430, 3067 |
| SexAI | ACCWGGT | 1 cut(s) | 2698 |
| SfcI | CTRYAG | 3 cut(s) | 753, 1359, 2248 |
| SinI | GGWCC | 3 cut(s) | 397, 1109, 2696 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1905, 2189 |
| SmlI | CTYRAG | 2 cut(s) | 2267, 3142 |
| SmoI | CTYRAG | 2 cut(s) | 2267, 3142 |
| SpeI | ACTAGT | 1 cut(s) | 1172 |
| SseBI | AGGCCT | 1 cut(s) | 1735 |
| SsiI | CCGC | 8 cut(s) | 146, 159, 308, 400, 1149, 1274, 1541, 2777 |
| SspI | AATATT | 1 cut(s) | 1626 |
| SspMI | CTAG | 9 cut(s) | 746, 1007, 1173, 1293, 1455, 1521, 1587, 2171, 2510 |
| StuI | AGGCCT | 1 cut(s) | 1735 |
| StyI | CCWWGG | 2 cut(s) | 474, 1188 |
| TaiI | ACGT | 4 cut(s) | 12, 186, 204, 2348 |
| TaqI | TCGA | 2 cut(s) | 467, 2738 |
| TaqII | GACCGA | 2 cut(s) | 1343, 2263 |
| TatI | WGTACW | 3 cut(s) | 805, 991, 1169 |
| TauI | GCSGC | 1 cut(s) | 148 |
| TfiI | GAWTC | 9 cut(s) | 175, 207, 508, 832, 1196, 1841, 1915, 2047, 2991 |
| TscAI | CASTG | 8 cut(s) | 228, 310, 572, 1069, 1075, 1621, 2476, 2665 |
| TseFI | GTSAC | 3 cut(s) | 1064, 2660, 2923 |
| Tsp45I | GTSAC | 3 cut(s) | 1064, 2660, 2923 |
| TspGWI | ACGGA | 2 cut(s) | 637, 2759 |
| TspRI | CASTG | 8 cut(s) | 228, 310, 572, 1069, 1075, 1621, 2476, 2665 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 419, 3161 |
| VpaK11BI | GGWCC | 3 cut(s) | 397, 1109, 2696 |
| XapI | RAATTY | 7 cut(s) | 724, 847, 1594, 2453, 2530, 2803, 3190 |
| XbaI | TCTAGA | 2 cut(s) | 1292, 2509 |
| XceI | RCATGY | 2 cut(s) | 1480, 2301 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 3025 |
| XmiI | GTMKAC | 1 cut(s) | 619 |
| XmnI | GAANNNNTTC | 1 cut(s) | 330 |
| XspI | CTAG | 9 cut(s) | 746, 1007, 1173, 1293, 1455, 1521, 1587, 2171, 2510 |
| ZrmI | AGTACT | 2 cut(s) | 807, 1171 |
| Zsp2I | ATGCAT | 1 cut(s) | 2158 |