Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0008543

Physical Location & Seq

Genomic Coordinates Reverse (-)

34484287 .. 34490699

Gene Structure 6413 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00242100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3225 bp

ATGGAAGAGGTTGGTGCCCAAGTTGCTGCCCCAATTTTCCTCCGTCAATCGCTTTCGAGTCGGTTCTGCGACGCGCCGGCGGCCATGGGTAAGAAGAAGCGCGATCTCCCTTACCAGAACCCAAACTATCAACACCCAAATTCGCAGCCGAGGTACCCCGGGACCAACAGCTGGAACCCAAACGTTTGGGGATGGGACAGTATGAGGTTTGTAGCCAAGCCACTGGACACTGAGATGATGGGTACTTCCAATTCAGAGCCCAAGAGGAAGGAGGAAGCTGCTGCTGCTGCTGCTGGAGTTGTGAAGAGTACCGCCGTGGTGGAGGATGATGATGAACGCCTTCAGCTGAATCTGGGTGGTGGGTTGGCTTCTGTCGAGGAGCCGGCGGCATCCAGGCCGAATAAGAGGGTCCGGTCCGGATCTCCGGGGAATAATGGTGGAAGCTACCCCATGTGCCAAGTTGATGATTGTAAAGAGGATCTGTCAAGCGCCAAAGACTATCATCGCCGTCATAAAGTCTGTGAGAGTCACAGTAAATCCACCAAAGCCCTAGTTGCTAAGCAGATGCAGAGGTTCTGCCAGCAGTGCAGCAGGTTTCACCCGCTTTCAGAGTTTGATGAGGGGAAGAGAAGTTGCAGAAGGAGACTTGCGGGGCATAACAGGCGAAGAAGGAAAACCCAGCCTGAGGATGTTACCTCAAGGCTCACTATCCCTGGAGATGGGGATAACAAAACTAGTGGAAATTTGGATATTGTCAACTTGTTAGCTGCTATAACTCGTCCACAGGGGAAAAATGATGTCCGAACTACCAACGGCTCGTCGGTACTGGACAGAGAGCAGCTCCTTCAGATTCTTAGCAAGATAAATTCATTGCCTTTGCCAGTAGACCTTGCTGCCAAGTTGCCGAATCTCGGAAATTTAAATTGGAAAGCTTCAGACCTACTTTCTTTAGATCTTCAAAACAAATTGAATGGAAAAACATCTGCGTCAACCATGGACTTGATTACTGTTCTTTCAGCTACTCTAGCAGCACCTTCTTCTGACACACTTGCTATGTTATCTCAAAAGAGCAGTCAGAGTAGTGACAGTGAGAAAACTAAGTTAACATGCTCTGACCAGGCAGCTGGTCCTAATTTGCAGAAGAGGCCTCAAGAGTTTCATTCAGCTGGGGGAGAGAGAAGTAGTACTAGCTACCAGTCTCCTACAGAAGATTCAGACTGCCAGGTTCAAGAGACTCGAGTCAAATTACCTTTACAGCTATTCAGCTCCTCACCTGAGGATGACAGTCCACCAAAACTGGCTTCTTCCAGAAAGTATTTCTCTTCAGACAGTAGTAATCGCACTGAGGAGAGGTCTCCATCATCGTCACCTCCTGTAATGCAAACACTGTTTCCAATGAAGAGTATGGCAGACACTGTGAAGTCGGAGAAACTTTCAATAAGCAAAGATTTGAATGTGAACCTGGACTCTAGCATGAATGGTGGTGGTAACTTGCCTTTTGATCTTTTTAGAGGGTCAAATAGAGGAGCTGTCAGCTCCTCCATTCAAAATTTTCCACCCCAAGCTGGCTATACATCTTCTAGTTCTGATCATTCACCATCTAGCTTGAATTCTGATCCTCAGGATCGTACTGGAAGAATACTGTTTAAACTATTTGATAAGGATCCGAGTCAGTTACCAGGGACATTGCGGACACAGGTATACAGTTGGCTTTCTAACAGTCCGTCCGAAATGGAGAGCTACATAAGGCCTGGCTGTGTGGTCCTATCAGTTTATGTGTCAATGTCATTTGCGGCCTGGGAGCATCTGGAAGAAAACCTGGTCCAACGTGTCAGTTCTTTAATACAAAGTTCAGATTCTGATTTTTGGAGAAGTGGAAGGTTTTTAGTAAATACGGGGAGGCAATTAGCTTCTCATAAAGATGGAAAGATTCGTCTATGCAAAGCCTGGACAACGTTTAGTTCACCAGAGTTAATCTCTGTGTCCCCTTTGGCTGTCGTGGGCGGGCAAAAAACCTCTCTTTCAATAAGGGGTAGAAATCTGACTACTCTTGGCACCAAGATTCATTGCACGTATATGGGTGGTTACACATCAAAGGAAGTTGGAACAACATATCATGGAACTGCGTATGATGAGATAAATTTGGGAAGCTTTCAAATTCATGATGCATCTCCCGGTGTTCTAGGTCGCTGTTTCATAGAGGTGGAAAATGGTTTCAAGGGAAACAGCTTTCCTGTGATCATAGCTGATGCTACAATCTGTAGCGAATTGAATCTCATTGAGTCTGAGTTTGATGGGGAGACAAAGGTATGCAGTGCAATTTCAGAAGATGAAAATCATGATTATGGGCGGCCCAGGTCAAGGGAGGAAGTCCTTCACTTTCTGAACGAGCTAGGCTGGCTCTTCCAAAGGAAAAGGATCTCTTCCATGATTCAAGGGTCTGGCTACTCTCTTAGCCGTTTCAAATTTTTACTCACGTTCACTGTTGAGAGAGACTGTTGTACTTTGGTGAAAACACTTCTAGACATATTGGTAAATTTCGATGGGAATGAGCTATCAAGAGAGTCATTGGGGATGCTGTCAGATGTCCAGCTGTTAAACCGGGCTGTAAAAAGGAGGTGCAGGAAGATGATTGACTTGCTTATTAATTATTCTGTGATTAGCAGTGACAAGAGATACATTTTTCCTCCAAATCTTGCTGGACCTGGTGGCCTGACACCTCTTCATTTGGCTGCTGCTTTGTCAAATTCGGAGGATATGATTGATGCTTTGACGAATGACCCAGAGGAGATCGGATTGAACTGCTGGCATTCCCTTTTGGATGGTAATGGGCAGTCTCCATATGCTTATGCTATGATGAGGAATAATTACTCTTACAACAATCTGGTGGCTCGCAAACTTACTGACAGAAGAAATAGTCAGGTTACCTTAACAATTGGAAATGAGATAGAGCAAACCCATATGGGGATGGAGCTGGAGCTGGAGCGTAGGACAAGTATCCAATTCAGACAAGGTAGCAGATCATGTGCCAAATGCGCAGTTGCAGCAACAAAATACACCAGGAGGGTTCCTGGTGCTCAAGGCTTGCTTCAGCGTCCATTCATTCATTCTATGCTTGCCATAGCTGCTGTTTGTGTTTGTGTCTGCTTGTTCTTGAGAGGTTCCCCAGAAATTGGCTCGGTTGCTCCTTTCAAGTGGGAGAATTTGGATTTTGGCACAATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0071944 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBP

Protein Analysis

1074

Amino Acids

118.44

Weight (kDa)

8.43

Isoelectric Point (pI)

56.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SBP	PF03110	152 - 225	3.4e-30	SBP domain
Ig_SPL7	PF26102	654 - 758	8.3e-35	SPL7-like, immunoglobulin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008543)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20980 AT1G76580 AT1G76580 AT1G76580
fragaria_vesca	FvH4_5g26510 FvH4_5g26510 FvH4_5g26510 FvH4_5g26510
malus_domestica	MD00G1031600.v1.1 MD06G1001500.v1.1
prunus_persica	Prupe.5G002300_v2.0.a1
pyrus_communis	pycom06g00160 pycom16g26290
rosa_chinensis	RchiOBHm_Chr7g0217411
rosa_laevigata	RLG00000002479
rosa_multiflora	Rmu_sc0000145.1_g000013
rosa_roxburghii	Rroxscaffold_3G00242100
rosa_rugosa	Rorug07G0169000
rosa_samantha	Rh7AG308600 Rh7BG299300 Rh7CG328000 Rh7DG307900
rosa_wichuraiana	Rw7G026170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	3037
Acc36I	ACCTGC	1 cut(s)	582
Acc65I	GGTACC	1 cut(s)	153
AccB1I	GGYRCC	3 cut(s)	14, 153, 2054
AccB7I	CCANNNNNTGG	2 cut(s)	171, 3173
AccI	GTMKAC	2 cut(s)	885, 1701
AccII	CGCG	2 cut(s)	74, 102
AccIII	TCCGGA	1 cut(s)	416
AciI	CCGC	9 cut(s)	80, 312, 386, 602, 650, 1690, 1793, 2004, 2350
AclI	AACGTT	2 cut(s)	183, 1955
AclWI	GGATC	7 cut(s)	427, 486, 1610, 1632, 1658, 1671, 2426
AcoI	YGGCCR	1 cut(s)	81
AcuI	CTGAAG	5 cut(s)	326, 830, 918, 1308, 3074
AfaI	GTAC	7 cut(s)	155, 244, 310, 825, 1186, 1630, 2503
AfiI	CCNNNNNNNGG	8 cut(s)	171, 685, 719, 911, 1565, 2361, 2964, 3173
AflIII	ACRYGT	1 cut(s)	1828
AhlI	ACTAGT	1 cut(s)	734
AjuI	GAANNNNNNNTTGG	4 cut(s)	907, 939, 1285, 1317
Alw21I	GWGCWC	1 cut(s)	3079
Alw26I	GTCTC	7 cut(s)	637, 1203, 1226, 1359, 2294, 2487, 2841
AlwI	GGATC	7 cut(s)	427, 486, 1610, 1632, 1658, 1671, 2426
AlwNI	CAGNNNCTG	2 cut(s)	1415, 1859
Ama87I	CYCGRG	2 cut(s)	158, 1236
Aor13HI	TCCGGA	1 cut(s)	416
AoxI	GGCC	7 cut(s)	81, 395, 1145, 1748, 1794, 2351, 2710
ArsI	GACNNNNNNTTYG	2 cut(s)	1057, 1089
AseI	ATTAAT	1 cut(s)	2646
Asp700I	GAANNNNTTC	2 cut(s)	339, 2373
Asp718I	GGTACC	1 cut(s)	153
AspLEI	GCGC	4 cut(s)	76, 102, 491, 3038
AspS9I	GGNCC	8 cut(s)	162, 409, 414, 1127, 1762, 1822, 2352, 2702
AsuC2I	CCSGG	5 cut(s)	159, 160, 426, 2175, 2603
AsuHPI	GGTGA	6 cut(s)	590, 1263, 1359, 1587, 1956, 2521
AvaI	CYCGRG	2 cut(s)	158, 1236
AvaII	GGWCC	7 cut(s)	162, 409, 414, 1127, 1762, 1822, 2702
AxyI	CCTNAGG	3 cut(s)	684, 1275, 1620
BaeGI	GKGCMC	1 cut(s)	19
BamHI	GGATCC	1 cut(s)	1663
BanI	GGYRCC	3 cut(s)	14, 153, 2054
BanII	GRGCYC	1 cut(s)	261
Bbv12I	GWGCWC	1 cut(s)	3079
BceAI	ACGGC	4 cut(s)	299, 492, 829, 2442
BciVI	GTATCC	1 cut(s)	3008
BclI	TGATCA	2 cut(s)	1588, 2238
BcnI	CCSGG	5 cut(s)	159, 160, 426, 2175, 2603
BcoDI	GTCTC	7 cut(s)	637, 1203, 1226, 1359, 2294, 2487, 2841
BcuI	ACTAGT	1 cut(s)	734
BfmI	CTRYAG	2 cut(s)	1203, 2260
BfoI	RGCGCY	1 cut(s)	492
BfuAI	ACCTGC	1 cut(s)	582
BfuI	GTATCC	1 cut(s)	3008
BglII	AGATCT	1 cut(s)	952
BlpI	GCTNAGC	1 cut(s)	558
BmcAI	AGTACT	1 cut(s)	1186
Bme18I	GGWCC	7 cut(s)	162, 409, 414, 1127, 1762, 1822, 2702
BmeT110I	CYCGRG	2 cut(s)	158, 1236
BmgT120I	GGNCC	8 cut(s)	162, 409, 414, 1127, 1762, 1822, 2352, 2702
BmsI	GCATC	8 cut(s)	398, 555, 1813, 2155, 2177, 2239, 2565, 2755
BoxI	GACNNNNGTC	1 cut(s)	1238
BplI	GAGNNNNNCTC	4 cut(s)	825, 857, 1961, 1993
BpmI	CTGGAG	4 cut(s)	315, 735, 2996, 3002
Bpu1102I	GCTNAGC	1 cut(s)	558
BpuEI	CTTGAG	4 cut(s)	682, 1134, 3063, 3175
BpuMI	CCSGG	5 cut(s)	159, 160, 426, 2175, 2603
BsaAI	YACGTR	1 cut(s)	2073
BsaBI	GATNNNNATC	2 cut(s)	1662, 2334
BsaI	GGTCTC	1 cut(s)	1359
BsaWI	WCCGGW	2 cut(s)	411, 416
Bsc4I	CCNNNNNNNGG	8 cut(s)	171, 685, 719, 911, 1565, 2361, 2964, 3173
Bse118I	RCCGGY	2 cut(s)	76, 382
Bse1I	ACTGG	6 cut(s)	228, 831, 881, 1195, 1302, 1636
Bse21I	CCTNAGG	3 cut(s)	684, 1275, 1620
Bse3DI	GCAATG	3 cut(s)	869, 1685, 2065
Bse8I	GATNNNNATC	2 cut(s)	1662, 2334
BseAI	TCCGGA	1 cut(s)	416
BseGI	GGATG	8 cut(s)	197, 331, 389, 694, 1285, 2580, 2827, 2973
BseJI	GATNNNNATC	2 cut(s)	1662, 2334
BseLI	CCNNNNNNNGG	8 cut(s)	171, 685, 719, 911, 1565, 2361, 2964, 3173
BseMI	GCAATG	3 cut(s)	869, 1685, 2065
BseMII	CTCAG	6 cut(s)	222, 675, 1266, 1335, 1634, 2277
BseNI	ACTGG	6 cut(s)	228, 831, 881, 1195, 1302, 1636
BseRI	GAGGAG	6 cut(s)	392, 1258, 1361, 1528, 1539, 2801
BseSI	GKGCMC	1 cut(s)	19
BseYI	CCCAGC	2 cut(s)	678, 1166
BsgI	GTGCAG	2 cut(s)	607, 2641
Bsh1236I	CGCG	2 cut(s)	74, 102
BshFI	GGCC	7 cut(s)	83, 397, 1147, 1750, 1796, 2353, 2712
BshNI	GGYRCC	3 cut(s)	14, 153, 2054
BsiHKAI	GWGCWC	1 cut(s)	3079
BsiHKCI	CYCGRG	2 cut(s)	158, 1236
BsiSI	CCGG	8 cut(s)	77, 159, 383, 412, 417, 425, 2175, 2602
BslFI	GGGAC	4 cut(s)	175, 209, 1696, 1969
BslI	CCNNNNNNNGG	8 cut(s)	171, 685, 719, 911, 1565, 2361, 2964, 3173
BsmAI	GTCTC	7 cut(s)	637, 1203, 1226, 1359, 2294, 2487, 2841
BsmFI	GGGAC	4 cut(s)	175, 209, 1696, 1969
BsmI	GAATGC	1 cut(s)	2809
BsnI	GGCC	7 cut(s)	83, 397, 1147, 1750, 1796, 2353, 2712
Bso31I	GGTCTC	1 cut(s)	1359
BsoBI	CYCGRG	2 cut(s)	158, 1236
Bsp1286I	GDGCHC	3 cut(s)	19, 261, 3079
Bsp13I	TCCGGA	1 cut(s)	416
Bsp1720I	GCTNAGC	1 cut(s)	558
Bsp19I	CCATGG	2 cut(s)	84, 993
BspACI	CCGC	9 cut(s)	80, 312, 386, 602, 650, 1690, 1793, 2004, 2350
BspANI	GGCC	7 cut(s)	83, 397, 1147, 1750, 1796, 2353, 2712
BspCNI	CTCAG	6 cut(s)	223, 676, 1267, 1336, 1633, 2278
BspEI	TCCGGA	1 cut(s)	416
BspFNI	CGCG	2 cut(s)	74, 102
BspHI	TCATGA	2 cut(s)	2161, 2338
BspMI	ACCTGC	1 cut(s)	582
BspPI	GGATC	7 cut(s)	427, 486, 1610, 1632, 1658, 1671, 2426
BspQI	GCTCTTC	1 cut(s)	2408
BspT107I	GGYRCC	3 cut(s)	14, 153, 2054
BspTNI	GGTCTC	1 cut(s)	1359
BsrDI	GCAATG	3 cut(s)	869, 1685, 2065
BsrFI	RCCGGY	2 cut(s)	76, 382
BsrI	ACTGG	6 cut(s)	228, 831, 881, 1195, 1302, 1636
BssAI	RCCGGY	2 cut(s)	76, 382
BssNAI	GTATAC	1 cut(s)	1702
BssT1I	CCWWGG	2 cut(s)	84, 993
Bst1107I	GTATAC	1 cut(s)	1702
Bst6I	CTCTTC	8 cut(s)	299, 620, 1136, 1327, 1394, 2408, 2428, 2727
BstBAI	YACGTR	1 cut(s)	2073
BstDSI	CCRYGG	3 cut(s)	84, 315, 993
BstEII	GGTNACC	1 cut(s)	2923
BstF5I	GGATG	8 cut(s)	197, 331, 389, 694, 1285, 2580, 2827, 2973
BstFNI	CGCG	2 cut(s)	74, 102
BstH2I	RGCGCY	1 cut(s)	492
BstHHI	GCGC	4 cut(s)	76, 102, 491, 3038
BstMAI	GTCTC	7 cut(s)	637, 1203, 1226, 1359, 2294, 2487, 2841
BstNSI	RCATGY	1 cut(s)	1110
BstPAI	GACNNNNGTC	1 cut(s)	1238
BstPI	GGTNACC	1 cut(s)	2923
BstSFI	CTRYAG	2 cut(s)	1203, 2260
BstSLI	GKGCMC	1 cut(s)	19
BstUI	CGCG	2 cut(s)	74, 102
BstX2I	RGATCY	5 cut(s)	419, 478, 952, 1663, 2418
BstXI	CCANNNNNNTGG	3 cut(s)	186, 223, 1124
BstYI	RGATCY	5 cut(s)	419, 478, 952, 1663, 2418
BstZ17I	GTATAC	1 cut(s)	1702
Bsu36I	CCTNAGG	3 cut(s)	684, 1275, 1620
BsuI	GTATCC	1 cut(s)	3008
BsuRI	GGCC	7 cut(s)	83, 397, 1147, 1750, 1796, 2353, 2712
BtgI	CCRYGG	3 cut(s)	84, 315, 993
BtgZI	GCGATG	1 cut(s)	488
BtsCI	GGATG	8 cut(s)	197, 331, 389, 694, 1285, 2580, 2827, 2973
BtsI	GCAGTG	3 cut(s)	590, 2320, 2671
BveI	ACCTGC	1 cut(s)	582
CaiI	CAGNNNCTG	2 cut(s)	1415, 1859
CciI	TCATGA	2 cut(s)	2161, 2338
CfoI	GCGC	4 cut(s)	76, 102, 491, 3038
Cfr10I	RCCGGY	2 cut(s)	76, 382
Cfr13I	GGNCC	8 cut(s)	162, 409, 414, 1127, 1762, 1822, 2352, 2702
Cfr9I	CCCGGG	1 cut(s)	158
CpoI	CGGWCCG	1 cut(s)	414
CseI	GACGC	3 cut(s)	80, 975, 3083
CsiI	ACCWGGT	2 cut(s)	1818, 2704
Csp6I	GTAC	7 cut(s)	154, 243, 309, 824, 1185, 1629, 2502
CspCI	CAANNNNNGTGG	2 cut(s)	718, 753
CspI	CGGWCCG	1 cut(s)	414
CviQI	GTAC	7 cut(s)	154, 243, 309, 824, 1185, 1629, 2502
DraI	TTTAAA	2 cut(s)	921, 1648
EaeI	YGGCCR	1 cut(s)	81
Eam1104I	CTCTTC	8 cut(s)	299, 620, 1136, 1327, 1394, 2408, 2428, 2727
EarI	CTCTTC	8 cut(s)	299, 620, 1136, 1327, 1394, 2408, 2428, 2727
Eco130I	CCWWGG	2 cut(s)	84, 993
Eco147I	AGGCCT	2 cut(s)	1147, 1750
Eco24I	GRGCYC	1 cut(s)	261
Eco31I	GGTCTC	1 cut(s)	1359
Eco47I	GGWCC	7 cut(s)	162, 409, 414, 1127, 1762, 1822, 2702
Eco57I	CTGAAG	5 cut(s)	326, 830, 918, 1308, 3074
Eco81I	CCTNAGG	3 cut(s)	684, 1275, 1620
Eco88I	CYCGRG	2 cut(s)	158, 1236
Eco91I	GGTNACC	1 cut(s)	2923
EcoO65I	GGTNACC	1 cut(s)	2923
EcoRI	GAATTC	1 cut(s)	1609
EcoT14I	CCWWGG	2 cut(s)	84, 993
EcoT22I	ATGCAT	1 cut(s)	2170
EcoT38I	GRGCYC	1 cut(s)	261
ErhI	CCWWGG	2 cut(s)	84, 993
FalI	AAGNNNNNCTT	4 cut(s)	2407, 2439, 3072, 3104
FaqI	GGGAC	4 cut(s)	175, 209, 1696, 1969
FauI	CCCGC	3 cut(s)	609, 643, 1997
FauNDI	CATATG	2 cut(s)	2842, 2961
FbaI	TGATCA	2 cut(s)	1588, 2238
FblI	GTMKAC	2 cut(s)	885, 1701
FokI	GGATG	8 cut(s)	204, 338, 376, 701, 1292, 2587, 2834, 2980
FriOI	GRGCYC	1 cut(s)	261
FspI	TGCGCA	1 cut(s)	3037
GlaI	GCGC	4 cut(s)	75, 101, 490, 3037
GsaI	CCCAGC	2 cut(s)	682, 1170
GsuI	CTGGAG	4 cut(s)	315, 735, 2996, 3002
HaeII	RGCGCY	1 cut(s)	492
HaeIII	GGCC	7 cut(s)	83, 397, 1147, 1750, 1796, 2353, 2712
HapII	CCGG	8 cut(s)	77, 159, 383, 412, 417, 425, 2175, 2602
HgaI	GACGC	3 cut(s)	80, 975, 3083
HhaI	GCGC	4 cut(s)	76, 102, 491, 3038
Hin6I	GCGC	4 cut(s)	74, 100, 489, 3036
HinP1I	GCGC	4 cut(s)	74, 100, 489, 3036
HincII	GTYRAC	3 cut(s)	757, 990, 1104
HindII	GTYRAC	3 cut(s)	757, 990, 1104
HindIII	AAGCTT	2 cut(s)	930, 2149
HpaI	GTTAAC	1 cut(s)	1104
HpaII	CCGG	8 cut(s)	77, 159, 383, 412, 417, 425, 2175, 2602
HphI	GGTGA	6 cut(s)	590, 1263, 1359, 1587, 1956, 2521
Hpy99I	CGWCG	2 cut(s)	74, 823
HpyAV	CCTTC	8 cut(s)	262, 350, 633, 663, 854, 1044, 1872, 2384
HpyCH4IV	ACGT	5 cut(s)	183, 1828, 1955, 2072, 2477
HpySE526I	ACGT	5 cut(s)	183, 1828, 1955, 2072, 2477
HspAI	GCGC	4 cut(s)	74, 100, 489, 3036
Kpn2I	TCCGGA	1 cut(s)	416
KpnI	GGTACC	1 cut(s)	157
KroI	GCCGGC	2 cut(s)	76, 382
KroNI	GCCGGC	2 cut(s)	78, 384
Ksp22I	TGATCA	2 cut(s)	1588, 2238
KspAI	GTTAAC	1 cut(s)	1104
LguI	GCTCTTC	1 cut(s)	2408
LweI	GCATC	8 cut(s)	398, 555, 1813, 2155, 2177, 2239, 2565, 2755
MabI	ACCWGGT	2 cut(s)	1818, 2704
MaeII	ACGT	5 cut(s)	183, 1828, 1955, 2072, 2477
MaeIII	GTNAC	9 cut(s)	527, 691, 1082, 1365, 1487, 1674, 2084, 2666, 2923
MfeI	CAATTG	1 cut(s)	2934
MflI	RGATCY	5 cut(s)	419, 478, 952, 1663, 2418
MhlI	GDGCHC	3 cut(s)	19, 261, 3079
MlyI	GAGTC	8 cut(s)	67, 535, 1228, 1248, 1460, 1678, 2291, 2573
MmeI	TCCRAC	3 cut(s)	1404, 1849, 2083
Mph1103I	ATGCAT	1 cut(s)	2170
MreI	CGCCGGCG	1 cut(s)	76
MroI	TCCGGA	1 cut(s)	416
MroNI	GCCGGC	2 cut(s)	76, 382
MroXI	GAANNNNTTC	2 cut(s)	339, 2373
MseI	TTAA	8 cut(s)	920, 1103, 1647, 1841, 1973, 2597, 2646, 2930
MslI	CAYNNNNRTG	5 cut(s)	233, 1920, 2075, 2201, 2343
MspA1I	CMGCKG	5 cut(s)	171, 346, 1124, 1166, 2593
MspI	CCGG	8 cut(s)	77, 159, 383, 412, 417, 425, 2175, 2602
MssI	GTTTAAAC	1 cut(s)	1648
MunI	CAATTG	1 cut(s)	2934
Mva1269I	GAATGC	1 cut(s)	2809
MvnI	CGCG	2 cut(s)	74, 102
NaeI	GCCGGC	2 cut(s)	78, 384
NciI	CCSGG	5 cut(s)	159, 160, 426, 2175, 2603
NcoI	CCATGG	2 cut(s)	84, 993
NdeI	CATATG	2 cut(s)	2842, 2961
NgoMIV	GCCGGC	2 cut(s)	76, 382
NmeAIII	GCCGAG	1 cut(s)	174
NmuCI	GTSAC	4 cut(s)	527, 1082, 1365, 2666
NsbI	TGCGCA	1 cut(s)	3037
NsiI	ATGCAT	1 cut(s)	2170
NspI	RCATGY	1 cut(s)	1110
PaeR7I	CTCGAG	1 cut(s)	1236
PagI	TCATGA	2 cut(s)	2161, 2338
PceI	AGGCCT	2 cut(s)	1147, 1750
PciSI	GCTCTTC	1 cut(s)	2408
PctI	GAATGC	1 cut(s)	2809
PdiI	GCCGGC	2 cut(s)	78, 384
PdmI	GAANNNNTTC	2 cut(s)	339, 2373
PfeI	GAWTC	9 cut(s)	349, 850, 907, 1211, 1856, 1930, 2062, 2272, 2431
PflMI	CCANNNNNTGG	2 cut(s)	171, 3173
PleI	GAGTC	8 cut(s)	66, 534, 1228, 1247, 1460, 1677, 2290, 2572
PmeI	GTTTAAAC	1 cut(s)	1648
PpsI	GAGTC	8 cut(s)	66, 534, 1228, 1247, 1460, 1677, 2290, 2572
Ppu21I	YACGTR	1 cut(s)	2073
PshAI	GACNNNNGTC	1 cut(s)	1238
PshBI	ATTAAT	1 cut(s)	2646
Psp1406I	AACGTT	2 cut(s)	183, 1955
PspEI	GGTNACC	1 cut(s)	2923
PspFI	CCCAGC	2 cut(s)	678, 1166
PspPI	GGNCC	8 cut(s)	162, 409, 414, 1127, 1762, 1822, 2352, 2702
PspXI	VCTCGAGB	1 cut(s)	1236
PstNI	CAGNNNCTG	2 cut(s)	1415, 1859
PsuI	RGATCY	5 cut(s)	419, 478, 952, 1663, 2418
PvuII	CAGCTG	5 cut(s)	171, 346, 1124, 1166, 2593
RsaI	GTAC	7 cut(s)	155, 244, 310, 825, 1186, 1630, 2503
RsaNI	GTAC	7 cut(s)	154, 243, 309, 824, 1185, 1629, 2502
RseI	CAYNNNNRTG	5 cut(s)	233, 1920, 2075, 2201, 2343
Rsr2I	CGGWCCG	1 cut(s)	414
RsrII	CGGWCCG	1 cut(s)	414
SapI	GCTCTTC	1 cut(s)	2408
SaqAI	TTAA	8 cut(s)	920, 1103, 1647, 1841, 1973, 2597, 2646, 2930
Sau96I	GGNCC	8 cut(s)	162, 409, 414, 1127, 1762, 1822, 2352, 2702
ScaI	AGTACT	1 cut(s)	1186
SchI	GAGTC	8 cut(s)	67, 535, 1228, 1248, 1460, 1678, 2291, 2573
SduI	GDGCHC	3 cut(s)	19, 261, 3079
SexAI	ACCWGGT	2 cut(s)	1818, 2704
SfaNI	GCATC	8 cut(s)	398, 555, 1813, 2155, 2177, 2239, 2565, 2755
SfcI	CTRYAG	2 cut(s)	1203, 2260
Sfr274I	CTCGAG	1 cut(s)	1236
SgrAI	CRCCGGYG	1 cut(s)	76
SinI	GGWCC	7 cut(s)	162, 409, 414, 1127, 1762, 1822, 2702
SlaI	CTCGAG	1 cut(s)	1236
SmaI	CCCGGG	1 cut(s)	160
SmiI	ATTTAAAT	1 cut(s)	921
SmiMI	CAYNNNNRTG	5 cut(s)	233, 1920, 2075, 2201, 2343
SmlI	CTYRAG	5 cut(s)	697, 1149, 1236, 3078, 3154
SmoI	CTYRAG	5 cut(s)	697, 1149, 1236, 3078, 3154
SpeI	ACTAGT	1 cut(s)	734
SseBI	AGGCCT	2 cut(s)	1147, 1750
SsiI	CCGC	9 cut(s)	80, 312, 386, 602, 650, 1690, 1793, 2004, 2350
StuI	AGGCCT	2 cut(s)	1147, 1750
StyI	CCWWGG	2 cut(s)	84, 993
SwaI	ATTTAAAT	1 cut(s)	921
TaiI	ACGT	5 cut(s)	186, 1831, 1958, 2075, 2480
TaqI	TCGA	4 cut(s)	56, 375, 1237, 2541
TatI	WGTACW	2 cut(s)	1184, 2501
TauI	GCSGC	4 cut(s)	83, 389, 1796, 2353
TfiI	GAWTC	9 cut(s)	349, 850, 907, 1211, 1856, 1930, 2062, 2272, 2431
Tru1I	TTAA	8 cut(s)	920, 1103, 1647, 1841, 1973, 2597, 2646, 2930
Tru9I	TTAA	8 cut(s)	920, 1103, 1647, 1841, 1973, 2597, 2646, 2930
TseFI	GTSAC	4 cut(s)	527, 1082, 1365, 2666
Tsp45I	GTSAC	4 cut(s)	527, 1082, 1365, 2666
TspGWI	ACGGA	2 cut(s)	32, 1713
TspMI	CCCGGG	1 cut(s)	158
Van91I	CCANNNNNTGG	2 cut(s)	171, 3173
VpaK11BI	GGWCC	7 cut(s)	162, 409, 414, 1127, 1762, 1822, 2702
VspI	ATTAAT	1 cut(s)	2646
XbaI	TCTAGA	1 cut(s)	2521
XceI	RCATGY	1 cut(s)	1110
XhoI	CTCGAG	1 cut(s)	1236
XmaI	CCCGGG	1 cut(s)	158
XmiI	GTMKAC	2 cut(s)	885, 1701
XmnI	GAANNNNTTC	2 cut(s)	339, 2373
ZrmI	AGTACT	1 cut(s)	1186
Zsp2I	ATGCAT	1 cut(s)	2170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.