Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015111

Physical Location & Seq

Genomic Coordinates Reverse (-)

28998038 .. 28999600

Gene Structure 1563 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G77170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1404 bp

ATGTTCTTCTCTGGTCTTATCTCCAAGCTTCATGTTCATGGTACTAAGAGAACAAATCACTTCACGATCTTTCACCGTTTGAATCATTTCGTCACTACATCATCTTCCTCGGTTACGCCTCTTTCGCCTCAAGATCGAAACAAACTCTTAGCTACTCTGTTATCAAACTGCACTAGCCTAGCTCGTGTTCGTCGGATCCATGGTGACATCTTCCGTTCACGAATCCTCGATCAATATCCGATCGCTTTCTTATGGAACAACATCATGCGATCTTACATTCGCCATGAGTCTCCTCTCGATGCAATTCAAGTATATCTCGGTATGGTGAGATCGACTGTTTTACCCGATCGATATTCTCTTCCGATTGTAATCAAAGCAGCCGTTCAAATTCATGATTTTACGTTGGGAAAGGAGCTTCATTCCGTCGCCGTTAGGTTAGGGTTCGTCGGAGATGAGTTCTGCGAGAGTGGGTTCATTACATTGTATTGTAAAGCAGGGGAATTTGAGAACGCACGTAAGGTGTTCGATGAAAATCCTGAGAGAAAGCTGGGGTCTTGGAACGCCATTATCGGAGGGTTGAATCACGCTGGTCGAGCTAACGAGGCGGTGGAAATGTTTGTGGATATGAAAAGGAGTGGACTTGAGCCTGATGATTTCACTATGGTTAGTGTGACTGCTTCTTGTGGAGGATTAGGTGACTTGAGCTTGGCTTTTCAGTTGCATAAATGCGTTCTACAAGCTAAGACCGAAGAGAAGTCTGATATCATGATGCTGAATTCGCTCATTGATATGTATGGAAAATGTGGGCGTATGGATTTAGCGAGTCACATATTCGAGGAAATGCGACAGAGAAACGTTGTCTCTTGGAGTTCTATGATCGTGGGTTACGCAGCTAACGGGAATACATTAGAGGCTTTAGAATGCTTTCGTCAGATGAGAGAATTCGGTGTCAGACCAAACAAGATCACGTTCGTTGGAGTTCTCAGTGCTTGCGTCCATGGAGGTCTTGTGGAGGAAGGAAAAACATATTTTGCGATGATGAAGTCAGAGTTCGAGCTAGAACCGGGATTATCGCATTACGGATGCATAGTTGATCTATTGAGCCGTGACGGGCAGCTTAAGGAGGCAAAGAAAGTTGTTGAGGAGATGCCGATGAAGCCTAACGTGATGGTTTGGGGTTGTTTGATGGGAGGGTGTGAGAAGTTTGGGGATGTTGAGATGGCTGAGTGGGTGGCTCCATACATGGTTGAGCTTGAGCCGTGGAACGATGGTGTTTATGTTGTCTTGGCTAATGTGTATGCACTCAGAGGGATGTGGAAAGATGTTGAGAGAGTTAGGAAGTTGATGAAGACGAAGAAGGTTGCTAAGATTCCTGCCTATAGCTATGCTTCAACGACATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

467

Amino Acids

52.66

Weight (kDa)

7.95

Isoelectric Point (pI)

36.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	185 - 221	7.5e-09	PPR repeat family
PPR	PF01535	185 - 214	9.9e-06	PPR repeat
PPR	PF01535	258 - 286	4.9e-06	PPR repeat
PPR_2	PF13041	284 - 332	2.7e-10	PPR repeat family
PPR_3	PF13812	284 - 332	3.7e-06	Pentatricopeptide repeat domain
PPR	PF01535	287 - 317	6.8e-08	PPR repeat
E_motif	PF20431	403 - 461	2.6e-17	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0015111)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77170
fragaria_vesca	FvH4_7g33970
malus_domestica	MD01G1235900.v1.1
prunus_persica	Prupe.2G326000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0384201
rosa_laevigata	RLG00000026060
rosa_multiflora	Rmu_co8317187.1_g000001 Rmu_sc0005139.1_g000005 Rmu_sc0014578.1_g000005
rosa_roxburghii	Rroxscaffold_4G00276860
rosa_rugosa	Rorug01G0445700
rosa_samantha	Rh1AG471200 Rh1BG429000 Rh1CG441600 Rh1DG461700
rosa_wichuraiana	Rw1G040130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	605
AclI	AACGTT	1 cut(s)	855
AclWI	GGATC	2 cut(s)	190, 203
AcsI	RAATTY	4 cut(s)	387, 500, 775, 941
AfaI	GTAC	1 cut(s)	43
AflII	CTTAAG	1 cut(s)	1118
AgsI	TTSAA	5 cut(s)	82, 308, 386, 580, 1392
Alw26I	GTCTC	2 cut(s)	294, 865
AlwI	GGATC	2 cut(s)	190, 203
ApeKI	GCWGC	3 cut(s)	377, 890, 1114
ApoI	RAATTY	4 cut(s)	387, 500, 775, 941
Asp700I	GAANNNNTTC	2 cut(s)	86, 924
AsuC2I	CCSGG	1 cut(s)	1065
AsuHPI	GGTGA	4 cut(s)	65, 215, 337, 707
BamHI	GGATCC	1 cut(s)	195
BauI	CACGAG	1 cut(s)	183
BbsI	GAAGAC	1 cut(s)	1355
BbvI	GCAGC	3 cut(s)	389, 902, 1126
BccI	CCATC	4 cut(s)	1162, 1180, 1213, 1262
BceAI	ACGGC	4 cut(s)	365, 413, 1089, 1243
BcnI	CCSGG	1 cut(s)	1065
BcoDI	GTCTC	2 cut(s)	294, 865
BfaI	CTAG	3 cut(s)	174, 179, 1058
BfmI	CTRYAG	1 cut(s)	1378
BfrI	CTTAAG	1 cut(s)	1118
BisI	GCNGC	3 cut(s)	378, 891, 1115
BlsI	GCNGC	3 cut(s)	379, 892, 1116
Bme1390I	CCNGG	1 cut(s)	1065
BmiI	GGNNCC	2 cut(s)	197, 1236
BmrFI	CCNGG	1 cut(s)	1065
BmsI	GCATC	4 cut(s)	289, 759, 1073, 1137
BpiI	GAAGAC	1 cut(s)	1355
BpuEI	CTTGAG	4 cut(s)	114, 662, 721, 1274
BpuMI	CCSGG	1 cut(s)	1065
Bsa29I	ATCGAT	1 cut(s)	349
BsaAI	YACGTR	1 cut(s)	515
BsaBI	GATNNNNATC	3 cut(s)	234, 368, 531
BsaJI	CCNNGG	4 cut(s)	108, 199, 997, 1259
BsaXI	ACNNNNNCTCC	2 cut(s)	993, 1023
Bse8I	GATNNNNATC	3 cut(s)	234, 368, 531
BseCI	ATCGAT	1 cut(s)	349
BseDI	CCNNGG	4 cut(s)	108, 199, 997, 1259
BseGI	GGATG	3 cut(s)	1088, 1216, 1317
BseJI	GATNNNNATC	3 cut(s)	234, 368, 531
BseMII	CTCAG	4 cut(s)	528, 997, 1215, 1318
BseRI	GAGGAG	2 cut(s)	282, 1157
BseXI	GCAGC	3 cut(s)	389, 902, 1126
BseYI	CCCAGC	1 cut(s)	547
BsgI	GTGCAG	1 cut(s)	154
Bsh1285I	CGRYCG	2 cut(s)	243, 349
BshVI	ATCGAT	1 cut(s)	349
BsiEI	CGRYCG	2 cut(s)	243, 349
BsiSI	CCGG	1 cut(s)	1064
BsmAI	GTCTC	2 cut(s)	294, 865
BsmI	GAATGC	1 cut(s)	926
Bsp19I	CCATGG	2 cut(s)	199, 997
BspACI	CCGC	1 cut(s)	605
BspCNI	CTCAG	4 cut(s)	529, 996, 1216, 1317
BspDI	ATCGAT	1 cut(s)	349
BspHI	TCATGA	2 cut(s)	391, 765
BspLI	GGNNCC	2 cut(s)	197, 1236
BspPI	GGATC	2 cut(s)	190, 203
BspTI	CTTAAG	1 cut(s)	1118
BssECI	CCNNGG	4 cut(s)	108, 199, 997, 1259
BssSI	CACGAG	1 cut(s)	183
BssT1I	CCWWGG	2 cut(s)	199, 997
Bst2BI	CACGAG	1 cut(s)	183
Bst4CI	ACNGT	2 cut(s)	77, 337
Bst6I	CTCTTC	2 cut(s)	363, 744
BstAFI	CTTAAG	1 cut(s)	1118
BstBAI	YACGTR	1 cut(s)	515
BstC8I	GCNNGC	1 cut(s)	991
BstDEI	CTNAG	8 cut(s)	45, 148, 537, 741, 983, 1224, 1304, 1365
BstDSI	CCRYGG	3 cut(s)	199, 997, 1259
BstF5I	GGATG	3 cut(s)	1088, 1216, 1317
BstMAI	GTCTC	2 cut(s)	294, 865
BstMCI	CGRYCG	2 cut(s)	243, 349
BstMWI	GCNNNNNNNGC	5 cut(s)	124, 593, 602, 778, 1156
BstSCI	CCNGG	1 cut(s)	1063
BstSFI	CTRYAG	1 cut(s)	1378
BstV1I	GCAGC	3 cut(s)	389, 902, 1126
BstV2I	GAAGAC	1 cut(s)	1355
BstX2I	RGATCY	1 cut(s)	195
BstYI	RGATCY	1 cut(s)	195
Bsu15I	ATCGAT	1 cut(s)	349
BsuTUI	ATCGAT	1 cut(s)	349
BtgI	CCRYGG	3 cut(s)	199, 997, 1259
BtgZI	GCGATG	1 cut(s)	1049
BtsCI	GGATG	3 cut(s)	1088, 1216, 1317
BtsIMutI	CAGTG	1 cut(s)	991
Cac8I	GCNNGC	1 cut(s)	991
CciI	TCATGA	2 cut(s)	391, 765
ClaI	ATCGAT	1 cut(s)	349
CseI	GACGC	1 cut(s)	982
Csp6I	GTAC	1 cut(s)	42
CviAII	CATG	9 cut(s)	32, 38, 200, 265, 284, 392, 766, 998, 1243
CviQI	GTAC	1 cut(s)	42
DdeI	CTNAG	8 cut(s)	45, 148, 537, 741, 983, 1224, 1304, 1365
Eam1104I	CTCTTC	2 cut(s)	363, 744
EarI	CTCTTC	2 cut(s)	363, 744
Eco130I	CCWWGG	2 cut(s)	199, 997
Eco32I	GATATC	1 cut(s)	763
EcoRI	GAATTC	2 cut(s)	775, 941
EcoRV	GATATC	1 cut(s)	763
EcoT14I	CCWWGG	2 cut(s)	199, 997
EcoT22I	ATGCAT	1 cut(s)	1088
ErhI	CCWWGG	2 cut(s)	199, 997
FaeI	CATG	9 cut(s)	35, 41, 203, 268, 287, 395, 769, 1001, 1246
FatI	CATG	9 cut(s)	31, 37, 199, 264, 283, 391, 765, 997, 1242
Fnu4HI	GCNGC	3 cut(s)	378, 891, 1115
FokI	GGATG	3 cut(s)	1095, 1223, 1324
Fsp4HI	GCNGC	3 cut(s)	378, 891, 1115
FspBI	CTAG	3 cut(s)	174, 179, 1058
GluI	GCNGC	3 cut(s)	378, 891, 1115
GsaI	CCCAGC	1 cut(s)	551
HapII	CCGG	1 cut(s)	1064
HgaI	GACGC	1 cut(s)	982
Hin1II	CATG	9 cut(s)	35, 41, 203, 268, 287, 395, 769, 1001, 1246
HindIII	AAGCTT	1 cut(s)	26
HinfI	GANTC	6 cut(s)	82, 222, 287, 580, 823, 1369
HpaII	CCGG	1 cut(s)	1064
HphI	GGTGA	4 cut(s)	65, 215, 337, 707
Hpy166II	GTNNAC	2 cut(s)	218, 638
Hpy188III	TCNNGA	7 cut(s)	64, 131, 219, 296, 392, 536, 766
Hpy8I	GTNNAC	2 cut(s)	218, 638
Hpy99I	CGWCG	3 cut(s)	195, 428, 449
HpyAV	CCTTC	2 cut(s)	1010, 1351
HpyCH4III	ACNGT	2 cut(s)	77, 337
HpyCH4IV	ACGT	5 cut(s)	401, 514, 855, 968, 1164
HpyCH4V	TGCA	5 cut(s)	171, 302, 721, 1086, 1301
HpyF10VI	GCNNNNNNNGC	5 cut(s)	124, 593, 602, 778, 1156
HpyF3I	CTNAG	8 cut(s)	45, 148, 537, 741, 983, 1224, 1304, 1365
HpySE526I	ACGT	5 cut(s)	401, 514, 855, 968, 1164
Hsp92II	CATG	9 cut(s)	35, 41, 203, 268, 287, 395, 769, 1001, 1246
LmnI	GCTCC	2 cut(s)	412, 1240
LpnPI	CCDG	7 cut(s)	480, 533, 549, 573, 660, 1077, 1386
Lsp1109I	GCAGC	3 cut(s)	389, 902, 1126
LweI	GCATC	4 cut(s)	289, 759, 1073, 1137
MaeI	CTAG	3 cut(s)	174, 179, 1058
MaeII	ACGT	5 cut(s)	401, 514, 855, 968, 1164
MaeIII	GTNAC	8 cut(s)	91, 112, 203, 670, 695, 824, 884, 1106
MboII	GAAGA	6 cut(s)	96, 202, 350, 761, 1360, 1366
MflI	RGATCY	1 cut(s)	195
MluCI	AATT	5 cut(s)	303, 387, 500, 775, 941
MlyI	GAGTC	2 cut(s)	296, 832
MmeI	TCCRAC	3 cut(s)	173, 427, 955
Mph1103I	ATGCAT	1 cut(s)	1088
MroXI	GAANNNNTTC	2 cut(s)	86, 924
MseI	TTAA	1 cut(s)	1119
MslI	CAYNNNNRTG	2 cut(s)	36, 788
MspCI	CTTAAG	1 cut(s)	1118
MspI	CCGG	1 cut(s)	1064
MspR9I	CCNGG	1 cut(s)	1065
Mva1269I	GAATGC	1 cut(s)	926
MwoI	GCNNNNNNNGC	5 cut(s)	124, 593, 602, 778, 1156
NciI	CCSGG	1 cut(s)	1065
NcoI	CCATGG	2 cut(s)	199, 997
NlaIII	CATG	9 cut(s)	35, 41, 203, 268, 287, 395, 769, 1001, 1246
NlaIV	GGNNCC	2 cut(s)	197, 1236
NmuCI	GTSAC	6 cut(s)	91, 203, 670, 695, 824, 1106
NsiI	ATGCAT	1 cut(s)	1088
PagI	TCATGA	2 cut(s)	391, 765
PctI	GAATGC	1 cut(s)	926
PdmI	GAANNNNTTC	2 cut(s)	86, 924
PfeI	GAWTC	4 cut(s)	82, 222, 580, 1369
PkrI	GCNGC	3 cut(s)	379, 892, 1116
Ple19I	CGATCG	2 cut(s)	243, 349
PleI	GAGTC	2 cut(s)	295, 831
PpsI	GAGTC	2 cut(s)	295, 831
Ppu21I	YACGTR	1 cut(s)	515
Psp1406I	AACGTT	1 cut(s)	855
PspFI	CCCAGC	1 cut(s)	547
PspN4I	GGNNCC	2 cut(s)	197, 1236
PsuI	RGATCY	1 cut(s)	195
PvuI	CGATCG	2 cut(s)	243, 349
RsaI	GTAC	1 cut(s)	43
RsaNI	GTAC	1 cut(s)	42
RseI	CAYNNNNRTG	2 cut(s)	36, 788
SaqAI	TTAA	1 cut(s)	1119
SatI	GCNGC	3 cut(s)	378, 891, 1115
SchI	GAGTC	2 cut(s)	296, 832
ScrFI	CCNGG	1 cut(s)	1065
SfaNI	GCATC	4 cut(s)	289, 759, 1073, 1137
SfcI	CTRYAG	1 cut(s)	1378
SmiMI	CAYNNNNRTG	2 cut(s)	36, 788
SmlI	CTYRAG	5 cut(s)	129, 641, 700, 1118, 1253
SmoI	CTYRAG	5 cut(s)	129, 641, 700, 1118, 1253
Sse9I	AATT	5 cut(s)	303, 387, 500, 775, 941
SsiI	CCGC	1 cut(s)	605
SspMI	CTAG	3 cut(s)	174, 179, 1058
StyD4I	CCNGG	1 cut(s)	1063
StyI	CCWWGG	2 cut(s)	199, 997
TaaI	ACNGT	2 cut(s)	77, 337
TaiI	ACGT	5 cut(s)	404, 517, 858, 971, 1167
TaqI	TCGA	9 cut(s)	136, 228, 297, 332, 349, 525, 592, 834, 1053
TaqII	GACCGA	1 cut(s)	761
TasI	AATT	5 cut(s)	303, 387, 500, 775, 941
TfiI	GAWTC	4 cut(s)	82, 222, 580, 1369
Tru1I	TTAA	1 cut(s)	1119
Tru9I	TTAA	1 cut(s)	1119
TscAI	CASTG	1 cut(s)	991
TseFI	GTSAC	6 cut(s)	91, 203, 670, 695, 824, 1106
TseI	GCWGC	3 cut(s)	377, 890, 1114
Tsp45I	GTSAC	6 cut(s)	91, 203, 670, 695, 824, 1106
TspGWI	ACGGA	3 cut(s)	203, 412, 1095
TspRI	CASTG	1 cut(s)	991
Vha464I	CTTAAG	1 cut(s)	1118
XapI	RAATTY	4 cut(s)	387, 500, 775, 941
XmnI	GAANNNNTTC	2 cut(s)	86, 924
XspI	CTAG	3 cut(s)	174, 179, 1058
Zsp2I	ATGCAT	1 cut(s)	1088

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.