RchiOBHm_Chr1g0384201

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
68196358 .. 68197897
1540 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ60704

Sequence Viewer

Length: 1449 bp
ATGTATTCAAATTTCAAAGCCTTGTCTCTGTCCCGGTACCGTGTACACAGCTCCATGATCAAGCTTTGTAGAATCCAACTACCCAAAGCCACCAGAATTTCAGACCTTCTCAACCGAAGCTGCTTGACTACGAAAACTGCTGGAAATTTGGATGTACAATCTCCTCCAAGTATCCCGGACCCGGAAACACTAGCAACCCAGTTGTCCAATTGCACTAGTTTATCCGAACTGAACCAAATCCATGCCCACATTAGCAGAACCCAATTCCTACGTCTCCACCCAGCCCCATTTCACTGGAACAATATCATAAGGTCATACACCAGACGCGATGCTCCTACCAAGTCGCTCTTTGTTTACGTTTCCATGTCACGCGCCGGTGTTTTACCCGACTGCTACACCATCCCCATTGTTTTGAAAACACTGTGTCAGCTTTTTGCTGTGGGGATCGGCAGGCAGCTTCATTCTGTGGCTGTGAGGATTGGGCTCGACTCAAATGAGTTCTGTGAGAGTGGGTTTATTAACTTGTATTCCAAGGCGGGAGAGTTTGAGAATGCACGGAACGTGTTCGATCAAAACCCTGAGAGAAAGCTGGGTTCTTGGAATGCCCTCATTGCGGGGCTCTCGCAAGGCGGGCGTGCTAGGGAAGCTGTAGAGATGTTTATAGAGCTTAGGAAATGCGGGTTACTGCCGGATGATGTGACCATGGTTAGTGTCACGTCAGCTTGTGGTGGTCTGGGTGACTTGGGGTTGGCTCTTCAGTTGCATAAGTGTGTTTATCAAGCTGAAATCGTTGCGGAGAAATCGGATGTGCTGATGTTGAATTCGCTTGTTGATATGTATGGGAAATGTGGGAGGATGGACTTGGCTCACAGGGTGTTTTCGAGGATGGAGCAACAGAATGTGTCGTCGTGGACGTCGATGATTGTGGGGTATGGGATGCACGGGCATGTGGATGAGGCGCTGGAATGCTTTCGGTGCATGAGGGAGGCGGGAGTGAGGCCGAACCATGTGACCTTTGTTGGGGTGCTCAGTGCATGTGTTCATGGGGGGACAGTCCAAGAGGGAAGATATTACTTTGAAATGATGAACAAGGATTATGGGATAAACCCTCGCTTGCAGCATTATGGATGCATGGTGGATCTTCTTGGCAGAGCGGGGTTGCTTGAGGAGGCGAGGAAAATGGTGGAAGACATGCCGATGAAAGCAAATTCGGCAGTCTGGGGCTGCCTGATGGGAGCCTGTGAGAAATATGGGAATGTGAAGATGGGGGAGTGGGTGGCTAAGCATTTGCAAGAACTAGAGCCATGGAATGATGGGGCTTTTGTGGTTTTATCTAATATCTATGCCAGTAGAGGTTTATGGAAAGAGGTTGAGAGGGTAAGACGGATTAGGCACCAGAGAAAGCTTGCTAAGGTTCCTGGTTATAGCTTGGCAGGAAGTGCAGATTGA

Protein Analysis

482

Amino Acids

53.88

Weight (kDa)

8.77

Isoelectric Point (pI)

41.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 199 - 240 1.1e-06 PPR repeat family
PPR PF01535 199 - 228 4.9e-06 PPR repeat
PPR_2 PF13041 300 - 347 2.3e-10 PPR repeat family
PPR PF01535 303 - 332 3.4e-08 PPR repeat
E_motif PF20431 417 - 476 3.6e-14 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0015111)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 917
Acc65I GGTACC 1 cut(s) 36
AccB1I GGYRCC 2 cut(s) 36, 1392
AccBSI CCGCTC 1 cut(s) 1154
AccII CGCG 2 cut(s) 327, 372
AciI CCGC 7 cut(s) 536, 614, 630, 678, 794, 989, 1154
AclWI GGATC 2 cut(s) 452, 1146
AcsI RAATTY 5 cut(s) 10, 96, 145, 820, 1207
AcuI CTGAAG 1 cut(s) 740
AcyI GRCGYC 1 cut(s) 914
AdeI CACNNNGTG 1 cut(s) 874
AfaI GTAC 3 cut(s) 38, 45, 156
AfiI CCNNNNNNNGG 3 cut(s) 181, 613, 1020
AflIII ACRYGT 1 cut(s) 561
AgsI TTSAA 5 cut(s) 9, 16, 415, 820, 1079
AhlI ACTAGT 1 cut(s) 215
AjiI CACGTC 1 cut(s) 717
AjnI CCWGG 1 cut(s) 1417
Alw21I GWGCWC 1 cut(s) 1029
Alw26I GTCTC 2 cut(s) 30, 278
AlwI GGATC 2 cut(s) 452, 1146
AoxI GGCC 1 cut(s) 998
ApeKI GCWGC 4 cut(s) 120, 454, 1117, 1224
ApoI RAATTY 5 cut(s) 10, 96, 145, 820, 1207
Asp700I GAANNNNTTC 2 cut(s) 563, 969
Asp718I GGTACC 1 cut(s) 36
AspLEI GCGC 2 cut(s) 374, 961
AspS9I GGNCC 1 cut(s) 178
AsuC2I CCSGG 3 cut(s) 34, 176, 182
AsuHPI GGTGA 1 cut(s) 749
AvaII GGWCC 1 cut(s) 178
BanI GGYRCC 2 cut(s) 36, 1392
BanII GRGCYC 2 cut(s) 486, 621
BbsI GAAGAC 1 cut(s) 1194
Bbv12I GWGCWC 1 cut(s) 1029
BbvI GCAGC 4 cut(s) 107, 466, 1129, 1211
BccI CCATC 6 cut(s) 407, 850, 880, 1225, 1258, 1307
BciT130I CCWGG 1 cut(s) 1419
BciVI GTATCC 1 cut(s) 182
BclI TGATCA 1 cut(s) 57
BcnI CCSGG 3 cut(s) 34, 176, 182
BcoDI GTCTC 2 cut(s) 30, 278
BcuI ACTAGT 1 cut(s) 215
BfaI CTAG 4 cut(s) 191, 216, 639, 1298
BfmI CTRYAG 1 cut(s) 648
BfoI RGCGCY 1 cut(s) 962
BfuI GTATCC 1 cut(s) 182
BisI GCNGC 4 cut(s) 121, 455, 1118, 1225
BlpI GCTNAGC 1 cut(s) 1281
BlsI GCNGC 4 cut(s) 122, 456, 1119, 1226
Bme1390I CCNGG 4 cut(s) 34, 176, 182, 1419
Bme18I GGWCC 1 cut(s) 178
BmgBI CACGTC 1 cut(s) 717
BmgT120I GGNCC 1 cut(s) 178
BmiI GGNNCC 5 cut(s) 38, 180, 1237, 1394, 1416
BmrFI CCNGG 4 cut(s) 34, 176, 182, 1419
BmrI ACTGGG 1 cut(s) 193
BmsI GCATC 3 cut(s) 319, 927, 1118
BmuI ACTGGG 1 cut(s) 193
BpiI GAAGAC 1 cut(s) 1194
Bpu10I CCTNAGC 2 cut(s) 668, 1410
Bpu1102I GCTNAGC 1 cut(s) 1281
BpuEI CTTGAG 1 cut(s) 1184
BpuMI CCSGG 3 cut(s) 34, 176, 182
BsaHI GRCGYC 1 cut(s) 914
BsaJI CCNNGG 3 cut(s) 531, 702, 1304
Bsc4I CCNNNNNNNGG 3 cut(s) 181, 613, 1020
Bse118I RCCGGY 1 cut(s) 374
Bse1I ACTGG 3 cut(s) 199, 299, 1347
Bse3DI GCAATG 1 cut(s) 609
BseBI CCWGG 1 cut(s) 1419
BseDI CCNNGG 3 cut(s) 531, 702, 1304
BseGI GGATG 9 cut(s) 157, 399, 697, 811, 861, 891, 942, 958, 1133
BseLI CCNNNNNNNGG 3 cut(s) 181, 613, 1020
BseMI GCAATG 1 cut(s) 609
BseMII CTCAG 2 cut(s) 570, 1042
BseNI ACTGG 3 cut(s) 199, 299, 1347
BseRI GAGGAG 2 cut(s) 153, 1181
BseXI GCAGC 4 cut(s) 107, 466, 1129, 1211
BseYI CCCAGC 2 cut(s) 280, 589
Bsh1236I CGCG 2 cut(s) 327, 372
BshFI GGCC 1 cut(s) 1000
BshNI GGYRCC 2 cut(s) 36, 1392
BsiHKAI GWGCWC 1 cut(s) 1029
BsiSI CCGG 5 cut(s) 34, 176, 182, 375, 689
BslFI GGGAC 2 cut(s) 16, 1063
BslI CCNNNNNNNGG 3 cut(s) 181, 613, 1020
BsmAI GTCTC 2 cut(s) 30, 278
BsmBI CGTCTC 1 cut(s) 278
BsmFI GGGAC 2 cut(s) 16, 1063
BsmI GAATGC 3 cut(s) 556, 607, 971
BsnI GGCC 1 cut(s) 1000
Bsp1286I GDGCHC 3 cut(s) 486, 621, 1029
Bsp1407I TGTACA 2 cut(s) 43, 154
Bsp143I GATC 4 cut(s) 57, 444, 568, 1138
Bsp1720I GCTNAGC 1 cut(s) 1281
Bsp19I CCATGG 2 cut(s) 702, 1304
BspACI CCGC 7 cut(s) 536, 614, 630, 678, 794, 989, 1154
BspANI GGCC 1 cut(s) 1000
BspCNI CTCAG 2 cut(s) 571, 1041
BspFNI CGCG 2 cut(s) 327, 372
BspLI GGNNCC 5 cut(s) 38, 180, 1237, 1394, 1416
BspPI GGATC 2 cut(s) 452, 1146
BspQI GCTCTTC 1 cut(s) 759
BspT107I GGYRCC 2 cut(s) 36, 1392
BsrBI CCGCTC 1 cut(s) 1154
BsrDI GCAATG 1 cut(s) 609
BsrFI RCCGGY 1 cut(s) 374
BsrGI TGTACA 2 cut(s) 43, 154
BsrI ACTGG 3 cut(s) 199, 299, 1347
BssAI RCCGGY 1 cut(s) 374
BssECI CCNNGG 3 cut(s) 531, 702, 1304
BssMI GATC 4 cut(s) 57, 444, 568, 1138
BssNI GRCGYC 1 cut(s) 914
BssT1I CCWWGG 3 cut(s) 531, 702, 1304
Bst2UI CCWGG 1 cut(s) 1419
Bst4CI ACNGT 3 cut(s) 41, 423, 1054
Bst6I CTCTTC 1 cut(s) 759
BstACI GRCGYC 1 cut(s) 914
BstAPI GCANNNNNTGC 1 cut(s) 1439
BstAUI TGTACA 2 cut(s) 43, 154
BstC8I GCNNGC 5 cut(s) 452, 632, 636, 1115, 1407
BstDEI CTNAG 5 cut(s) 579, 668, 1028, 1281, 1410
BstDSI CCRYGG 2 cut(s) 702, 1304
BstF5I GGATG 9 cut(s) 157, 399, 697, 811, 861, 891, 942, 958, 1133
BstFNI CGCG 2 cut(s) 327, 372
BstH2I RGCGCY 1 cut(s) 962
BstHHI GCGC 2 cut(s) 374, 961
BstKTI GATC 4 cut(s) 60, 447, 571, 1141
BstMAI GTCTC 2 cut(s) 30, 278
BstMBI GATC 4 cut(s) 57, 444, 568, 1138
BstMWI GCNNNNNNNGC 6 cut(s) 611, 631, 644, 975, 1211, 1439
BstNI CCWGG 1 cut(s) 1419
BstNSI RCATGY 3 cut(s) 950, 1038, 1195
BstSCI CCNGG 4 cut(s) 32, 174, 180, 1417
BstSFI CTRYAG 1 cut(s) 648
BstUI CGCG 2 cut(s) 327, 372
BstV1I GCAGC 4 cut(s) 107, 466, 1129, 1211
BstV2I GAAGAC 1 cut(s) 1194
BstX2I RGATCY 1 cut(s) 1138
BstXI CCANNNNNNTGG 1 cut(s) 294
BstYI RGATCY 1 cut(s) 1138
BsuI GTATCC 1 cut(s) 182
BsuRI GGCC 1 cut(s) 1000
BtgI CCRYGG 2 cut(s) 702, 1304
BtgZI GCGATG 1 cut(s) 342
BtrI CACGTC 1 cut(s) 717
BtsCI GGATG 9 cut(s) 157, 399, 697, 811, 861, 891, 942, 958, 1133
BtsIMutI CAGTG 3 cut(s) 292, 419, 1036
Cac8I GCNNGC 5 cut(s) 452, 632, 636, 1115, 1407
CfoI GCGC 2 cut(s) 374, 961
Cfr10I RCCGGY 1 cut(s) 374
Cfr13I GGNCC 1 cut(s) 178
CseI GACGC 1 cut(s) 333
Csp6I GTAC 3 cut(s) 37, 44, 155
CviQI GTAC 3 cut(s) 37, 44, 155
DdeI CTNAG 5 cut(s) 579, 668, 1028, 1281, 1410
DpnI GATC 4 cut(s) 59, 446, 570, 1140
DpnII GATC 4 cut(s) 57, 444, 568, 1138
DraIII CACNNNGTG 1 cut(s) 874
Eam1104I CTCTTC 1 cut(s) 759
EarI CTCTTC 1 cut(s) 759
Eco130I CCWWGG 3 cut(s) 531, 702, 1304
Eco24I GRGCYC 2 cut(s) 486, 621
Eco47I GGWCC 1 cut(s) 178
Eco57I CTGAAG 1 cut(s) 740
EcoRI GAATTC 1 cut(s) 820
EcoRII CCWGG 1 cut(s) 1417
EcoT14I CCWWGG 3 cut(s) 531, 702, 1304
EcoT22I ATGCAT 1 cut(s) 1133
EcoT38I GRGCYC 2 cut(s) 486, 621
ErhI CCWWGG 3 cut(s) 531, 702, 1304
Esp3I CGTCTC 1 cut(s) 278
FalI AAGNNNNNCTT 2 cut(s) 332, 364
FaqI GGGAC 2 cut(s) 16, 1063
FauI CCCGC 6 cut(s) 529, 607, 623, 671, 982, 1147
FbaI TGATCA 1 cut(s) 57
Fnu4HI GCNGC 4 cut(s) 121, 455, 1118, 1225
FokI GGATG 9 cut(s) 164, 386, 704, 818, 868, 898, 949, 965, 1140
FriOI GRGCYC 2 cut(s) 486, 621
Fsp4HI GCNGC 4 cut(s) 121, 455, 1118, 1225
FspBI CTAG 4 cut(s) 191, 216, 639, 1298
GlaI GCGC 2 cut(s) 373, 960
GluI GCNGC 4 cut(s) 121, 455, 1118, 1225
GsaI CCCAGC 2 cut(s) 284, 593
HaeII RGCGCY 1 cut(s) 962
HaeIII GGCC 1 cut(s) 1000
HapII CCGG 5 cut(s) 34, 176, 182, 375, 689
HgaI GACGC 1 cut(s) 333
HhaI GCGC 2 cut(s) 374, 961
Hin1I GRCGYC 1 cut(s) 914
Hin6I GCGC 2 cut(s) 372, 959
HinP1I GCGC 2 cut(s) 372, 959
HindIII AAGCTT 2 cut(s) 62, 1403
HinfI GANTC 2 cut(s) 72, 488
HpaII CCGG 5 cut(s) 34, 176, 182, 375, 689
HphI GGTGA 1 cut(s) 749
Hpy166II GTNNAC 4 cut(s) 44, 46, 355, 912
Hpy188I TCNGA 3 cut(s) 103, 226, 805
Hpy8I GTNNAC 4 cut(s) 44, 46, 355, 912
Hpy99I CGWCG 2 cut(s) 910, 919
HpyAV CCTTC 1 cut(s) 116
HpyCH4III ACNGT 3 cut(s) 41, 423, 1054
HpyCH4IV ACGT 5 cut(s) 271, 357, 561, 716, 914
HpyF10VI GCNNNNNNNGC 6 cut(s) 611, 631, 644, 975, 1211, 1439
HpyF3I CTNAG 5 cut(s) 579, 668, 1028, 1281, 1410
HpySE526I ACGT 5 cut(s) 271, 357, 561, 716, 914
Hsp92I GRCGYC 1 cut(s) 914
HspAI GCGC 2 cut(s) 372, 959
KpnI GGTACC 1 cut(s) 40
Ksp22I TGATCA 1 cut(s) 57
Kzo9I GATC 4 cut(s) 57, 444, 568, 1138
LguI GCTCTTC 1 cut(s) 759
LmnI GCTCC 4 cut(s) 56, 337, 889, 1235
Lsp1109I GCAGC 4 cut(s) 107, 466, 1129, 1211
LweI GCATC 3 cut(s) 319, 927, 1118
MaeI CTAG 4 cut(s) 191, 216, 639, 1298
MaeII ACGT 5 cut(s) 271, 357, 561, 716, 914
MaeIII GTNAC 6 cut(s) 366, 681, 697, 712, 737, 1009
MalI GATC 4 cut(s) 59, 446, 570, 1140
MbiI CCGCTC 1 cut(s) 1154
MboI GATC 4 cut(s) 57, 444, 568, 1138
MboII GAAGA 5 cut(s) 746, 1077, 1133, 1199, 1273
MfeI CAATTG 1 cut(s) 208
MflI RGATCY 1 cut(s) 1138
MhlI GDGCHC 3 cut(s) 486, 621, 1029
MluCI AATT 7 cut(s) 10, 96, 145, 208, 263, 820, 1207
MlyI GAGTC 1 cut(s) 482
MmeI TCCRAC 1 cut(s) 100
Mph1103I ATGCAT 1 cut(s) 1133
MroXI GAANNNNTTC 2 cut(s) 563, 969
MseI TTAA 1 cut(s) 519
MslI CAYNNNNRTG 4 cut(s) 768, 945, 951, 1196
MspI CCGG 5 cut(s) 34, 176, 182, 375, 689
MspR9I CCNGG 4 cut(s) 34, 176, 182, 1419
MunI CAATTG 1 cut(s) 208
Mva1269I GAATGC 3 cut(s) 556, 607, 971
MvaI CCWGG 1 cut(s) 1419
MvnI CGCG 2 cut(s) 327, 372
MwoI GCNNNNNNNGC 6 cut(s) 611, 631, 644, 975, 1211, 1439
NciI CCSGG 3 cut(s) 34, 176, 182
NcoI CCATGG 2 cut(s) 702, 1304
NdeII GATC 4 cut(s) 57, 444, 568, 1138
NlaIV GGNNCC 5 cut(s) 38, 180, 1237, 1394, 1416
NmuCI GTSAC 5 cut(s) 366, 697, 712, 737, 1009
NsiI ATGCAT 1 cut(s) 1133
NspI RCATGY 3 cut(s) 950, 1038, 1195
PciSI GCTCTTC 1 cut(s) 759
PcsI WCGNNNNNNNCGW 2 cut(s) 911, 914
PctI GAATGC 3 cut(s) 556, 607, 971
PdmI GAANNNNTTC 2 cut(s) 563, 969
PfeI GAWTC 1 cut(s) 72
PfoI TCCNGGA 1 cut(s) 174
PkrI GCNGC 4 cut(s) 122, 456, 1119, 1226
PleI GAGTC 1 cut(s) 482
PpsI GAGTC 1 cut(s) 482
Psp6I CCWGG 1 cut(s) 1417
PspFI CCCAGC 2 cut(s) 280, 589
PspGI CCWGG 1 cut(s) 1417
PspN4I GGNNCC 5 cut(s) 38, 180, 1237, 1394, 1416
PspPI GGNCC 1 cut(s) 178
PsuI RGATCY 1 cut(s) 1138
RsaI GTAC 3 cut(s) 38, 45, 156
RsaNI GTAC 3 cut(s) 37, 44, 155
RseI CAYNNNNRTG 4 cut(s) 768, 945, 951, 1196
SapI GCTCTTC 1 cut(s) 759
SaqAI TTAA 1 cut(s) 519
SatI GCNGC 4 cut(s) 121, 455, 1118, 1225
Sau3AI GATC 4 cut(s) 57, 444, 568, 1138
Sau96I GGNCC 1 cut(s) 178
SchI GAGTC 1 cut(s) 482
ScrFI CCNGG 4 cut(s) 34, 176, 182, 1419
SduI GDGCHC 3 cut(s) 486, 621, 1029
SfaNI GCATC 3 cut(s) 319, 927, 1118
SfcI CTRYAG 1 cut(s) 648
SgrAI CRCCGGYG 1 cut(s) 374
SinI GGWCC 1 cut(s) 178
SmiMI CAYNNNNRTG 4 cut(s) 768, 945, 951, 1196
SmlI CTYRAG 1 cut(s) 1163
SmoI CTYRAG 1 cut(s) 1163
SpeI ACTAGT 1 cut(s) 215
Sse9I AATT 7 cut(s) 10, 96, 145, 208, 263, 820, 1207
SsiI CCGC 7 cut(s) 536, 614, 630, 678, 794, 989, 1154
SspMI CTAG 4 cut(s) 191, 216, 639, 1298
StyD4I CCNGG 4 cut(s) 32, 174, 180, 1417
StyI CCWWGG 3 cut(s) 531, 702, 1304
TaaI ACNGT 3 cut(s) 41, 423, 1054
TaiI ACGT 5 cut(s) 274, 360, 564, 719, 917
TaqI TCGA 4 cut(s) 486, 567, 881, 917
TasI AATT 7 cut(s) 10, 96, 145, 208, 263, 820, 1207
TatI WGTACW 2 cut(s) 43, 154
TfiI GAWTC 1 cut(s) 72
Tru1I TTAA 1 cut(s) 519
Tru9I TTAA 1 cut(s) 519
TscAI CASTG 3 cut(s) 299, 426, 1036
TseFI GTSAC 5 cut(s) 366, 697, 712, 737, 1009
TseI GCWGC 4 cut(s) 120, 454, 1117, 1224
Tsp45I GTSAC 5 cut(s) 366, 697, 712, 737, 1009
TspDTI ATGAA 4 cut(s) 449, 1031, 1100, 1214
TspGWI ACGGA 2 cut(s) 571, 1399
TspRI CASTG 3 cut(s) 299, 426, 1036
VpaK11BI GGWCC 1 cut(s) 178
XapI RAATTY 5 cut(s) 10, 96, 145, 820, 1207
XceI RCATGY 3 cut(s) 950, 1038, 1195
XmnI GAANNNNTTC 2 cut(s) 563, 969
XspI CTAG 4 cut(s) 191, 216, 639, 1298
ZraI GACGTC 1 cut(s) 915
Zsp2I ATGCAT 1 cut(s) 1133
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.