Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0015111

Physical Location & Seq

Genomic Coordinates Reverse (-)

30096357 .. 30097845

Gene Structure 1489 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G326000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1437 bp

ATGACCTCATTACAACGCTTCATGATTCGGCGTTGCAGAATTCAAGGACCCAACAACACCGCCATTTCATTTGCAGACCATCTTCTCACCCGAAGCTTCTTCACTACAAGTCTTGTACATTTGGATGCCCAACCCAATCTCCAAGCTTCAACAACTAGCCAAGACGACCCAGCAAAAATAATTGCAACCCAGTTGTCAAATTGCACTACCTTACAAGAATTGAATCAAATTTATGCCCATGTTATCAGAACCCACTTGTTACAGCTTTACACCGCCCCATTTCACTGGAACAACATCATAAGGTCCTACACTCGACGAGATGCTCCAACCAAGGCAATCTTTGTTTACCTTGCTATGTCTCGTTCTGGTGTTTTGCCTGATTGTTACACCCTCCCCATTATTTTGAAAGCCCTCTGTCAACTTTTTGCTGTAGAGATTGGTAGGCAGCTTCATTCCGTCGCTTTAAGGCTGGGCCTTGACTCCAATGAGTACTGTGAGAGCGGGTTTATAAACTTTTACTCTAAGGCGGGAGAATTTGAAAATGCACGCAATATGTTTGAGCAAAACCCCGAGAGAAAGTTGGGTTCTTGGAATGCCATCATTGGAGGCCTTTCACAAGGTGGGCGTGCAAAGGAGGCGATAGACACGTTCATAGAGCTCAGGAAATGTGGGTTCTTGCCGGACGATGTGACCATGGTTAGTATCACATCAGCTTGCGGTAGTTTAAGTGACTTAGGCTTGGCTCTTCAATTGCATAAATGTGTTTACCAAGCTAAAAACGTGGATAAATCGGATACCTTGATGTTAAATTCGATTATAGACATGTATGGGAAATGTGGGAGAATGGACTTGGCTTATAGGGTGTTTTCAAGGATGGAGCAACAAAACGTATCGTCGTGGACATCTATGATCGTGGGTTATGCGATGCATGGGCATGTGAACGAAGCACTTGAATGCTTTCGGTGCATGAGAGAGGCAGGAGTGAGACCTAATCATGTGACCTTCGTTGGGGTACTCAGTGCATGTGTTCATGGTGGGACTGTGCAAGAGGGGAAATTTTACTTCGACATGATGAAGAATACATACGGGATAAAGCCCCACTTGCAGCATTATGGATGCATGGTGGATCTTCTTGGCAGAGCGGGATTGCTCGAGGAGGCAAGAAAAATGGTTGAGGAGATGCCAATGAAGGCAAACTCGGTAGTCTGGGGCTGCCTGATGGGTGCCTGTGAGAAACATGGGAACGTTAAGATGGGGGAGTGGGTGGCTAAGCATTTGCAAGAATTAGAACCTTGGAATGATGGGGCTTATGTTGTTTTGTCTAATATATATGCCAGTAGAGGTTTATGGAAAGAGGTTGAGCGGGTACGATTGATTATGCATCAGAGAAAACTCGCTAAGTCTCCTGGTTATAGCTTGTCAACAAGTGCAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

479

Amino Acids

53.76

Weight (kDa)

8.53

Isoelectric Point (pI)

45.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015111)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77170
fragaria_vesca	FvH4_7g33970
malus_domestica	MD01G1235900.v1.1
prunus_persica	Prupe.2G326000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0384201
rosa_laevigata	RLG00000026060
rosa_multiflora	Rmu_co8317187.1_g000001 Rmu_sc0005139.1_g000005 Rmu_sc0014578.1_g000005
rosa_roxburghii	Rroxscaffold_4G00276860
rosa_rugosa	Rorug01G0445700
rosa_samantha	Rh1AG471200 Rh1BG429000 Rh1CG441600 Rh1DG461700
rosa_wichuraiana	Rw1G040130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	509
AccB1I	GGYRCC	1 cut(s)	1223
AccBSI	CCGCTC	3 cut(s)	501, 1142, 1363
AciI	CCGC	7 cut(s)	60, 273, 501, 527, 717, 1142, 1363
AclI	AACGTT	1 cut(s)	1245
AclWI	GGATC	1 cut(s)	1134
AcsI	RAATTY	5 cut(s)	39, 228, 533, 808, 1055
AdeI	CACNNNGTG	1 cut(s)	620
AfaI	GTAC	4 cut(s)	117, 491, 1014, 1368
AfiI	CCNNNNNNNGG	1 cut(s)	1008
AflIII	ACRYGT	2 cut(s)	645, 822
AgsI	TTSAA	8 cut(s)	44, 150, 223, 406, 539, 749, 870, 953
AjnI	CCWGG	1 cut(s)	1405
AluBI	AGCT	8 cut(s)	96, 146, 265, 448, 658, 713, 773, 1416
AluI	AGCT	8 cut(s)	96, 146, 265, 448, 658, 713, 773, 1416
Alw21I	GWGCWC	1 cut(s)	660
Alw26I	GTCTC	3 cut(s)	363, 979, 1407
AlwI	GGATC	1 cut(s)	1134
Ama87I	CYCGRG	2 cut(s)	569, 1151
AoxI	GGCC	2 cut(s)	472, 607
ApeKI	GCWGC	3 cut(s)	445, 1105, 1212
ApoI	RAATTY	5 cut(s)	39, 228, 533, 808, 1055
Asp700I	GAANNNNTTC	1 cut(s)	957
AspS9I	GGNCC	3 cut(s)	47, 303, 472
AsuHPI	GGTGA	1 cut(s)	79
AvaI	CYCGRG	2 cut(s)	569, 1151
AvaII	GGWCC	2 cut(s)	47, 303
BanI	GGYRCC	1 cut(s)	1223
BanII	GRGCYC	1 cut(s)	660
BarI	GAAGNNNNNNTAC	2 cut(s)	1067, 1099
Bbv12I	GWGCWC	1 cut(s)	660
BbvI	GCAGC	3 cut(s)	457, 1117, 1199
BccI	CCATC	6 cut(s)	87, 605, 868, 1213, 1246, 1295
BciT130I	CCWGG	1 cut(s)	1407
BciVI	GTATCC	1 cut(s)	787
BcoDI	GTCTC	3 cut(s)	363, 979, 1407
BfaI	CTAG	1 cut(s)	156
BfmI	CTRYAG	1 cut(s)	429
BfuI	GTATCC	1 cut(s)	787
BisI	GCNGC	3 cut(s)	446, 1106, 1213
BlpI	GCTNAGC	1 cut(s)	1269
BlsI	GCNGC	3 cut(s)	447, 1107, 1214
BmcAI	AGTACT	1 cut(s)	491
Bme1390I	CCNGG	1 cut(s)	1407
Bme18I	GGWCC	2 cut(s)	47, 303
BmeT110I	CYCGRG	2 cut(s)	569, 1151
BmgT120I	GGNCC	3 cut(s)	47, 303, 472
BmiI	GGNNCC	2 cut(s)	49, 1225
BmrFI	CCNGG	1 cut(s)	1407
BmrI	ACTGGG	1 cut(s)	184
BmsI	GCATC	6 cut(s)	115, 310, 915, 1106, 1170, 1390
BmuI	ACTGGG	1 cut(s)	184
Bpu10I	CCTNAGC	1 cut(s)	659
Bpu1102I	GCTNAGC	1 cut(s)	1269
BsaI	GGTCTC	1 cut(s)	979
BsaJI	CCNNGG	3 cut(s)	330, 693, 1292
BsaXI	ACNNNNNCTCC	2 cut(s)	123, 153
Bsc4I	CCNNNNNNNGG	1 cut(s)	1008
Bse1I	ACTGG	3 cut(s)	190, 290, 1335
BseBI	CCWGG	1 cut(s)	1407
BseDI	CCNNGG	3 cut(s)	330, 693, 1292
BseGI	GGATG	3 cut(s)	130, 879, 1121
BseLI	CCNNNNNNNGG	1 cut(s)	1008
BseMII	CTCAG	2 cut(s)	673, 1030
BseNI	ACTGG	3 cut(s)	190, 290, 1335
BseRI	GAGGAG	2 cut(s)	1169, 1190
BseXI	GCAGC	3 cut(s)	457, 1117, 1199
BseYI	CCCAGC	2 cut(s)	169, 469
BshFI	GGCC	2 cut(s)	474, 609
BshNI	GGYRCC	1 cut(s)	1223
BsiHKAI	GWGCWC	1 cut(s)	660
BsiHKCI	CYCGRG	2 cut(s)	569, 1151
BsiSI	CCGG	1 cut(s)	680
BslFI	GGGAC	1 cut(s)	1051
BslI	CCNNNNNNNGG	1 cut(s)	1008
BsmAI	GTCTC	3 cut(s)	363, 979, 1407
BsmFI	GGGAC	1 cut(s)	1051
BsmI	GAATGC	2 cut(s)	598, 959
BsnI	GGCC	2 cut(s)	474, 609
Bso31I	GGTCTC	1 cut(s)	979
BsoBI	CYCGRG	2 cut(s)	569, 1151
Bsp1286I	GDGCHC	1 cut(s)	660
Bsp1407I	TGTACA	1 cut(s)	115
Bsp143I	GATC	2 cut(s)	909, 1126
Bsp1720I	GCTNAGC	1 cut(s)	1269
Bsp19I	CCATGG	1 cut(s)	693
BspACI	CCGC	7 cut(s)	60, 273, 501, 527, 717, 1142, 1363
BspANI	GGCC	2 cut(s)	474, 609
BspCNI	CTCAG	2 cut(s)	672, 1029
BspHI	TCATGA	1 cut(s)	21
BspLI	GGNNCC	2 cut(s)	49, 1225
BspPI	GGATC	1 cut(s)	1134
BspQI	GCTCTTC	1 cut(s)	750
BspT107I	GGYRCC	1 cut(s)	1223
BspTNI	GGTCTC	1 cut(s)	979
BsrBI	CCGCTC	3 cut(s)	501, 1142, 1363
BsrGI	TGTACA	1 cut(s)	115
BsrI	ACTGG	3 cut(s)	190, 290, 1335
BssECI	CCNNGG	3 cut(s)	330, 693, 1292
BssMI	GATC	2 cut(s)	909, 1126
BssT1I	CCWWGG	3 cut(s)	330, 693, 1292
Bst2UI	CCWGG	1 cut(s)	1407
Bst4CI	ACNGT	2 cut(s)	494, 1042
Bst6I	CTCTTC	1 cut(s)	750
BstAUI	TGTACA	1 cut(s)	115
BstC8I	GCNNGC	3 cut(s)	547, 627, 715
BstDEI	CTNAG	6 cut(s)	522, 659, 733, 1016, 1269, 1398
BstDSI	CCRYGG	1 cut(s)	693
BstF5I	GGATG	3 cut(s)	130, 879, 1121
BstKTI	GATC	2 cut(s)	912, 1129
BstMAI	GTCTC	3 cut(s)	363, 979, 1407
BstMBI	GATC	2 cut(s)	909, 1126
BstMWI	GCNNNNNNNGC	3 cut(s)	635, 963, 1102
BstNI	CCWGG	1 cut(s)	1407
BstNSI	RCATGY	3 cut(s)	826, 938, 1026
BstSCI	CCNGG	1 cut(s)	1405
BstSFI	CTRYAG	1 cut(s)	429
BstV1I	GCAGC	3 cut(s)	457, 1117, 1199
BstX2I	RGATCY	1 cut(s)	1126
BstXI	CCANNNNNNTGG	1 cut(s)	285
BstYI	RGATCY	1 cut(s)	1126
BsuI	GTATCC	1 cut(s)	787
BsuRI	GGCC	2 cut(s)	474, 609
BtgI	CCRYGG	1 cut(s)	693
BtgZI	GCGATG	1 cut(s)	938
BtsCI	GGATG	3 cut(s)	130, 879, 1121
BtsIMutI	CAGTG	2 cut(s)	283, 1024
Cac8I	GCNNGC	3 cut(s)	547, 627, 715
CciI	TCATGA	1 cut(s)	21
Cfr13I	GGNCC	3 cut(s)	47, 303, 472
Csp6I	GTAC	4 cut(s)	116, 490, 1013, 1367
CviQI	GTAC	4 cut(s)	116, 490, 1013, 1367
DdeI	CTNAG	6 cut(s)	522, 659, 733, 1016, 1269, 1398
DpnI	GATC	2 cut(s)	911, 1128
DpnII	GATC	2 cut(s)	909, 1126
DraIII	CACNNNGTG	1 cut(s)	620
Eam1104I	CTCTTC	1 cut(s)	750
EarI	CTCTTC	1 cut(s)	750
Ecl136II	GAGCTC	1 cut(s)	658
Eco130I	CCWWGG	3 cut(s)	330, 693, 1292
Eco147I	AGGCCT	1 cut(s)	609
Eco24I	GRGCYC	1 cut(s)	660
Eco31I	GGTCTC	1 cut(s)	979
Eco47I	GGWCC	2 cut(s)	47, 303
Eco53kI	GAGCTC	1 cut(s)	658
Eco88I	CYCGRG	2 cut(s)	569, 1151
EcoICRI	GAGCTC	1 cut(s)	658
EcoO109I	RGGNCCY	2 cut(s)	47, 303
EcoRI	GAATTC	1 cut(s)	39
EcoRII	CCWGG	1 cut(s)	1405
EcoT14I	CCWWGG	3 cut(s)	330, 693, 1292
EcoT22I	ATGCAT	3 cut(s)	930, 1121, 1383
EcoT38I	GRGCYC	1 cut(s)	660
ErhI	CCWWGG	3 cut(s)	330, 693, 1292
FalI	AAGNNNNNCTT	4 cut(s)	323, 355, 1085, 1117
FaqI	GGGAC	1 cut(s)	1051
FauI	CCCGC	4 cut(s)	494, 520, 1135, 1356
Fnu4HI	GCNGC	3 cut(s)	446, 1106, 1213
FokI	GGATG	3 cut(s)	137, 886, 1128
FriOI	GRGCYC	1 cut(s)	660
Fsp4HI	GCNGC	3 cut(s)	446, 1106, 1213
FspBI	CTAG	1 cut(s)	156
GluI	GCNGC	3 cut(s)	446, 1106, 1213
GsaI	CCCAGC	2 cut(s)	173, 473
HaeIII	GGCC	2 cut(s)	474, 609
HapII	CCGG	1 cut(s)	680
HincII	GTYRAC	2 cut(s)	419, 1422
HindII	GTYRAC	2 cut(s)	419, 1422
HindIII	AAGCTT	2 cut(s)	94, 144
HinfI	GANTC	3 cut(s)	25, 223, 479
HpaII	CCGG	1 cut(s)	680
HphI	GGTGA	1 cut(s)	79
Hpy166II	GTNNAC	6 cut(s)	346, 419, 766, 900, 940, 1422
Hpy188I	TCNGA	3 cut(s)	248, 793, 1386
Hpy188III	TCNNGA	2 cut(s)	22, 661
Hpy8I	GTNNAC	6 cut(s)	346, 419, 766, 900, 940, 1422
Hpy99I	CGWCG	3 cut(s)	318, 461, 898
HpyAV	CCTTC	2 cut(s)	1012, 1183
HpyCH4III	ACNGT	2 cut(s)	494, 1042
HpyCH4IV	ACGT	4 cut(s)	647, 780, 888, 1245
HpyF10VI	GCNNNNNNNGC	3 cut(s)	635, 963, 1102
HpyF3I	CTNAG	6 cut(s)	522, 659, 733, 1016, 1269, 1398
HpySE526I	ACGT	4 cut(s)	647, 780, 888, 1245
Kzo9I	GATC	2 cut(s)	909, 1126
LguI	GCTCTTC	1 cut(s)	750
LmnI	GCTCC	2 cut(s)	328, 877
Lsp1109I	GCAGC	3 cut(s)	457, 1117, 1199
LweI	GCATC	6 cut(s)	115, 310, 915, 1106, 1170, 1390
MaeI	CTAG	1 cut(s)	156
MaeII	ACGT	4 cut(s)	647, 780, 888, 1245
MaeIII	GTNAC	5 cut(s)	258, 383, 688, 728, 997
MalI	GATC	2 cut(s)	911, 1128
MbiI	CCGCTC	3 cut(s)	501, 1142, 1363
MboI	GATC	2 cut(s)	909, 1126
MboII	GAAGA	5 cut(s)	74, 91, 737, 1087, 1121
MfeI	CAATTG	1 cut(s)	749
MflI	RGATCY	1 cut(s)	1126
MhlI	GDGCHC	1 cut(s)	660
MlyI	GAGTC	1 cut(s)	473
MmeI	TCCRAC	1 cut(s)	350
Mph1103I	ATGCAT	3 cut(s)	930, 1121, 1383
MroXI	GAANNNNTTC	1 cut(s)	957
MseI	TTAA	4 cut(s)	464, 725, 806, 1248
MslI	CAYNNNNRTG	4 cut(s)	123, 759, 933, 952
MspI	CCGG	1 cut(s)	680
MspR9I	CCNGG	1 cut(s)	1407
MunI	CAATTG	1 cut(s)	749
Mva1269I	GAATGC	2 cut(s)	598, 959
MvaI	CCWGG	1 cut(s)	1407
MwoI	GCNNNNNNNGC	3 cut(s)	635, 963, 1102
NcoI	CCATGG	1 cut(s)	693
NdeII	GATC	2 cut(s)	909, 1126
NlaIV	GGNNCC	2 cut(s)	49, 1225
NmuCI	GTSAC	3 cut(s)	688, 728, 997
NsiI	ATGCAT	3 cut(s)	930, 1121, 1383
NspI	RCATGY	3 cut(s)	826, 938, 1026
PaeR7I	CTCGAG	1 cut(s)	1151
PagI	TCATGA	1 cut(s)	21
PceI	AGGCCT	1 cut(s)	609
PciI	ACATGT	1 cut(s)	822
PciSI	GCTCTTC	1 cut(s)	750
PctI	GAATGC	2 cut(s)	598, 959
PdmI	GAANNNNTTC	1 cut(s)	957
PfeI	GAWTC	2 cut(s)	25, 223
PkrI	GCNGC	3 cut(s)	447, 1107, 1214
PleI	GAGTC	1 cut(s)	473
PpsI	GAGTC	1 cut(s)	473
PpuMI	RGGWCCY	2 cut(s)	47, 303
PscI	ACATGT	1 cut(s)	822
PsiI	TTATAA	1 cut(s)	509
Psp124BI	GAGCTC	1 cut(s)	660
Psp1406I	AACGTT	1 cut(s)	1245
Psp5II	RGGWCCY	2 cut(s)	47, 303
Psp6I	CCWGG	1 cut(s)	1405
PspFI	CCCAGC	2 cut(s)	169, 469
PspGI	CCWGG	1 cut(s)	1405
PspN4I	GGNNCC	2 cut(s)	49, 1225
PspPI	GGNCC	3 cut(s)	47, 303, 472
PspPPI	RGGWCCY	2 cut(s)	47, 303
PspXI	VCTCGAGB	1 cut(s)	1151
PsuI	RGATCY	1 cut(s)	1126
RsaI	GTAC	4 cut(s)	117, 491, 1014, 1368
RsaNI	GTAC	4 cut(s)	116, 490, 1013, 1367
RseI	CAYNNNNRTG	4 cut(s)	123, 759, 933, 952
SacI	GAGCTC	1 cut(s)	660
SapI	GCTCTTC	1 cut(s)	750
SaqAI	TTAA	4 cut(s)	464, 725, 806, 1248
SatI	GCNGC	3 cut(s)	446, 1106, 1213
Sau3AI	GATC	2 cut(s)	909, 1126
Sau96I	GGNCC	3 cut(s)	47, 303, 472
ScaI	AGTACT	1 cut(s)	491
SchI	GAGTC	1 cut(s)	473
ScrFI	CCNGG	1 cut(s)	1407
SduI	GDGCHC	1 cut(s)	660
SfaNI	GCATC	6 cut(s)	115, 310, 915, 1106, 1170, 1390
SfcI	CTRYAG	1 cut(s)	429
Sfr274I	CTCGAG	1 cut(s)	1151
SinI	GGWCC	2 cut(s)	47, 303
SlaI	CTCGAG	1 cut(s)	1151
SmiMI	CAYNNNNRTG	4 cut(s)	123, 759, 933, 952
SmlI	CTYRAG	1 cut(s)	1151
SmoI	CTYRAG	1 cut(s)	1151
SseBI	AGGCCT	1 cut(s)	609
SsiI	CCGC	7 cut(s)	60, 273, 501, 527, 717, 1142, 1363
SspMI	CTAG	1 cut(s)	156
SstI	GAGCTC	1 cut(s)	660
StuI	AGGCCT	1 cut(s)	609
StyD4I	CCNGG	1 cut(s)	1405
StyI	CCWWGG	3 cut(s)	330, 693, 1292
TaaI	ACNGT	2 cut(s)	494, 1042
TaiI	ACGT	4 cut(s)	650, 783, 891, 1248
TaqI	TCGA	4 cut(s)	313, 812, 1065, 1152
TatI	WGTACW	2 cut(s)	115, 489
TfiI	GAWTC	2 cut(s)	25, 223
Tru1I	TTAA	4 cut(s)	464, 725, 806, 1248
Tru9I	TTAA	4 cut(s)	464, 725, 806, 1248
TscAI	CASTG	2 cut(s)	290, 1024
TseFI	GTSAC	3 cut(s)	688, 728, 997
TseI	GCWGC	3 cut(s)	445, 1105, 1212
Tsp45I	GTSAC	3 cut(s)	688, 728, 997
TspDTI	ATGAA	7 cut(s)	10, 57, 440, 640, 1019, 1088, 1202
TspGWI	ACGGA	1 cut(s)	445
TspRI	CASTG	2 cut(s)	290, 1024
VpaK11BI	GGWCC	2 cut(s)	47, 303
XapI	RAATTY	5 cut(s)	39, 228, 533, 808, 1055
XceI	RCATGY	3 cut(s)	826, 938, 1026
XhoI	CTCGAG	1 cut(s)	1151
XmnI	GAANNNNTTC	1 cut(s)	957
XspI	CTAG	1 cut(s)	156
ZrmI	AGTACT	1 cut(s)	491
Zsp2I	ATGCAT	3 cut(s)	930, 1121, 1383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.