Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8317187.1

Orthogroup ID

OG0015111

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 707

Gene Structure 706 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8317187.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 706 bp

atgtcacgcgccggtgttttacccgactgctacaccatccccattgttttgaaaacactgtgtcagctttttgctgtggggatcggcaggcagcttcattctgtggctgtgaggattgggctcgactcaaatgagttctgtgagagtgggtttattaacttgtattccaaggcgggagagtttgagaatgcacggaacgtgttcgatcaaaaccctgagagaaagctgggctcttggaatgccctcattgcggggctttcgcaaggcgggcgtgctagggaagctgtagagatgtttatagagcttaggaaatgcgggttactgccggatgatgtgaccatggttagtgtcacgtcagcttgtggtggtctgggtgacttggggttggctcttcagttgcataagtgtgtttatcaagctgaaatcgttgcggagaaatcggatgtgctgatgttgaattcgcttgttgatatgtatgggaaatgtgggaggatggacttggctcacagggtgttttcgaggatggagcaacagaatgtgtcgtcgtggacgtcgatgattgtggggtatgggatgcacgggcatgtggatgaggcgctggaatgctttcggtgcatgagggaggcgggagtgaggccgaaccatgtgacctttgttggggtgctcagtgcatgtgttcatggggggacagtccaagagggaagat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

235

Amino Acids

25.68

Weight (kDa)

6.16

Isoelectric Point (pI)

30.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015111)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77170
fragaria_vesca	FvH4_7g33970
malus_domestica	MD01G1235900.v1.1
prunus_persica	Prupe.2G326000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0384201
rosa_laevigata	RLG00000026060
rosa_multiflora	Rmu_co8317187.1_g000001 Rmu_sc0005139.1_g000005 Rmu_sc0014578.1_g000005
rosa_roxburghii	Rroxscaffold_4G00276860
rosa_rugosa	Rorug01G0445700
rosa_samantha	Rh1AG471200 Rh1BG429000 Rh1CG441600 Rh1DG461700
rosa_wichuraiana	Rw1G040130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	554
AccII	CGCG	1 cut(s)	9
AciI	CCGC	6 cut(s)	173, 251, 267, 315, 431, 626
AclWI	GGATC	1 cut(s)	89
AcsI	RAATTY	1 cut(s)	457
AcuI	CTGAAG	1 cut(s)	377
AcyI	GRCGYC	1 cut(s)	551
AdeI	CACNNNGTG	1 cut(s)	511
AfiI	CCNNNNNNNGG	2 cut(s)	250, 657
AflIII	ACRYGT	1 cut(s)	198
AgsI	TTSAA	2 cut(s)	52, 457
AjiI	CACGTC	1 cut(s)	354
AluBI	AGCT	7 cut(s)	67, 94, 226, 284, 304, 359, 419
AluI	AGCT	7 cut(s)	67, 94, 226, 284, 304, 359, 419
Alw21I	GWGCWC	1 cut(s)	666
AlwI	GGATC	1 cut(s)	89
AoxI	GGCC	1 cut(s)	635
ApeKI	GCWGC	1 cut(s)	91
ApoI	RAATTY	1 cut(s)	457
Asp700I	GAANNNNTTC	2 cut(s)	200, 606
AspLEI	GCGC	2 cut(s)	11, 598
AsuHPI	GGTGA	1 cut(s)	386
BanII	GRGCYC	2 cut(s)	123, 233
Bbv12I	GWGCWC	1 cut(s)	666
BbvI	GCAGC	1 cut(s)	103
BccI	CCATC	3 cut(s)	44, 487, 517
BfaI	CTAG	1 cut(s)	276
BfmI	CTRYAG	1 cut(s)	285
BfoI	RGCGCY	1 cut(s)	599
BisI	GCNGC	1 cut(s)	92
BlsI	GCNGC	1 cut(s)	93
BmgBI	CACGTC	1 cut(s)	354
BmsI	GCATC	1 cut(s)	564
Bpu10I	CCTNAGC	1 cut(s)	305
BsaHI	GRCGYC	1 cut(s)	551
BsaJI	CCNNGG	2 cut(s)	168, 339
Bsc4I	CCNNNNNNNGG	2 cut(s)	250, 657
Bse118I	RCCGGY	1 cut(s)	11
Bse3DI	GCAATG	1 cut(s)	246
BseDI	CCNNGG	2 cut(s)	168, 339
BseGI	GGATG	7 cut(s)	36, 334, 448, 498, 528, 579, 595
BseLI	CCNNNNNNNGG	2 cut(s)	250, 657
BseMI	GCAATG	1 cut(s)	246
BseMII	CTCAG	2 cut(s)	207, 679
BseXI	GCAGC	1 cut(s)	103
BseYI	CCCAGC	1 cut(s)	226
Bsh1236I	CGCG	1 cut(s)	9
BshFI	GGCC	1 cut(s)	637
BsiHKAI	GWGCWC	1 cut(s)	666
BsiSI	CCGG	2 cut(s)	12, 326
BslFI	GGGAC	1 cut(s)	700
BslI	CCNNNNNNNGG	2 cut(s)	250, 657
BsmFI	GGGAC	1 cut(s)	700
BsmI	GAATGC	3 cut(s)	193, 244, 608
BsnI	GGCC	1 cut(s)	637
Bsp1286I	GDGCHC	3 cut(s)	123, 233, 666
Bsp143I	GATC	2 cut(s)	81, 205
Bsp19I	CCATGG	1 cut(s)	339
BspACI	CCGC	6 cut(s)	173, 251, 267, 315, 431, 626
BspANI	GGCC	1 cut(s)	637
BspCNI	CTCAG	2 cut(s)	208, 678
BspFNI	CGCG	1 cut(s)	9
BspPI	GGATC	1 cut(s)	89
BspQI	GCTCTTC	1 cut(s)	396
BsrDI	GCAATG	1 cut(s)	246
BsrFI	RCCGGY	1 cut(s)	11
BssAI	RCCGGY	1 cut(s)	11
BssECI	CCNNGG	2 cut(s)	168, 339
BssMI	GATC	2 cut(s)	81, 205
BssNI	GRCGYC	1 cut(s)	551
BssT1I	CCWWGG	2 cut(s)	168, 339
Bst4CI	ACNGT	2 cut(s)	60, 691
Bst6I	CTCTTC	1 cut(s)	396
BstACI	GRCGYC	1 cut(s)	551
BstC8I	GCNNGC	3 cut(s)	89, 269, 273
BstDEI	CTNAG	3 cut(s)	216, 305, 665
BstDSI	CCRYGG	1 cut(s)	339
BstF5I	GGATG	7 cut(s)	36, 334, 448, 498, 528, 579, 595
BstFNI	CGCG	1 cut(s)	9
BstH2I	RGCGCY	1 cut(s)	599
BstHHI	GCGC	2 cut(s)	11, 598
BstKTI	GATC	2 cut(s)	84, 208
BstMBI	GATC	2 cut(s)	81, 205
BstMWI	GCNNNNNNNGC	4 cut(s)	248, 268, 281, 612
BstNSI	RCATGY	2 cut(s)	587, 675
BstSFI	CTRYAG	1 cut(s)	285
BstUI	CGCG	1 cut(s)	9
BstV1I	GCAGC	1 cut(s)	103
BsuRI	GGCC	1 cut(s)	637
BtgI	CCRYGG	1 cut(s)	339
BtrI	CACGTC	1 cut(s)	354
BtsCI	GGATG	7 cut(s)	36, 334, 448, 498, 528, 579, 595
BtsIMutI	CAGTG	2 cut(s)	56, 673
Cac8I	GCNNGC	3 cut(s)	89, 269, 273
CfoI	GCGC	2 cut(s)	11, 598
Cfr10I	RCCGGY	1 cut(s)	11
CviAII	CATG	6 cut(s)	340, 584, 616, 644, 672, 680
DdeI	CTNAG	3 cut(s)	216, 305, 665
DpnI	GATC	2 cut(s)	83, 207
DpnII	GATC	2 cut(s)	81, 205
DraIII	CACNNNGTG	1 cut(s)	511
Eam1104I	CTCTTC	1 cut(s)	396
EarI	CTCTTC	1 cut(s)	396
Eco130I	CCWWGG	2 cut(s)	168, 339
Eco24I	GRGCYC	2 cut(s)	123, 233
Eco57I	CTGAAG	1 cut(s)	377
EcoRI	GAATTC	1 cut(s)	457
EcoT14I	CCWWGG	2 cut(s)	168, 339
EcoT38I	GRGCYC	2 cut(s)	123, 233
ErhI	CCWWGG	2 cut(s)	168, 339
FaeI	CATG	6 cut(s)	343, 587, 619, 647, 675, 683
FaqI	GGGAC	1 cut(s)	700
FatI	CATG	6 cut(s)	339, 583, 615, 643, 671, 679
FauI	CCCGC	5 cut(s)	166, 244, 260, 308, 619
Fnu4HI	GCNGC	1 cut(s)	92
FokI	GGATG	7 cut(s)	23, 341, 455, 505, 535, 586, 602
FriOI	GRGCYC	2 cut(s)	123, 233
Fsp4HI	GCNGC	1 cut(s)	92
FspBI	CTAG	1 cut(s)	276
GlaI	GCGC	2 cut(s)	10, 597
GluI	GCNGC	1 cut(s)	92
GsaI	CCCAGC	1 cut(s)	230
HaeII	RGCGCY	1 cut(s)	599
HaeIII	GGCC	1 cut(s)	637
HapII	CCGG	2 cut(s)	12, 326
HhaI	GCGC	2 cut(s)	11, 598
Hin1I	GRCGYC	1 cut(s)	551
Hin1II	CATG	6 cut(s)	343, 587, 619, 647, 675, 683
Hin6I	GCGC	2 cut(s)	9, 596
HinP1I	GCGC	2 cut(s)	9, 596
HinfI	GANTC	1 cut(s)	125
HpaII	CCGG	2 cut(s)	12, 326
HphI	GGTGA	1 cut(s)	386
Hpy166II	GTNNAC	1 cut(s)	549
Hpy188I	TCNGA	1 cut(s)	442
Hpy8I	GTNNAC	1 cut(s)	549
Hpy99I	CGWCG	2 cut(s)	547, 556
HpyCH4III	ACNGT	2 cut(s)	60, 691
HpyCH4IV	ACGT	3 cut(s)	198, 353, 551
HpyCH4V	TGCA	5 cut(s)	191, 400, 577, 615, 671
HpyF10VI	GCNNNNNNNGC	4 cut(s)	248, 268, 281, 612
HpyF3I	CTNAG	3 cut(s)	216, 305, 665
HpySE526I	ACGT	3 cut(s)	198, 353, 551
Hsp92I	GRCGYC	1 cut(s)	551
Hsp92II	CATG	6 cut(s)	343, 587, 619, 647, 675, 683
HspAI	GCGC	2 cut(s)	9, 596
Kzo9I	GATC	2 cut(s)	81, 205
LguI	GCTCTTC	1 cut(s)	396
LmnI	GCTCC	1 cut(s)	526
LpnPI	CCDG	8 cut(s)	25, 73, 212, 228, 339, 356, 493, 584
Lsp1109I	GCAGC	1 cut(s)	103
LweI	GCATC	1 cut(s)	564
MaeI	CTAG	1 cut(s)	276
MaeII	ACGT	3 cut(s)	198, 353, 551
MaeIII	GTNAC	6 cut(s)	3, 318, 334, 349, 374, 646
MalI	GATC	2 cut(s)	83, 207
MboI	GATC	2 cut(s)	81, 205
MboII	GAAGA	1 cut(s)	383
MhlI	GDGCHC	3 cut(s)	123, 233, 666
MluCI	AATT	1 cut(s)	457
MlyI	GAGTC	1 cut(s)	119
MnlI	CCTC	9 cut(s)	105, 254, 483, 513, 586, 612, 616, 627, 691
MroXI	GAANNNNTTC	2 cut(s)	200, 606
MseI	TTAA	1 cut(s)	156
MslI	CAYNNNNRTG	3 cut(s)	405, 582, 588
MspI	CCGG	2 cut(s)	12, 326
Mva1269I	GAATGC	3 cut(s)	193, 244, 608
MvnI	CGCG	1 cut(s)	9
MwoI	GCNNNNNNNGC	4 cut(s)	248, 268, 281, 612
NcoI	CCATGG	1 cut(s)	339
NdeII	GATC	2 cut(s)	81, 205
NlaIII	CATG	6 cut(s)	343, 587, 619, 647, 675, 683
NmuCI	GTSAC	5 cut(s)	3, 334, 349, 374, 646
NspI	RCATGY	2 cut(s)	587, 675
PciSI	GCTCTTC	1 cut(s)	396
PcsI	WCGNNNNNNNCGW	2 cut(s)	548, 551
PctI	GAATGC	3 cut(s)	193, 244, 608
PdmI	GAANNNNTTC	2 cut(s)	200, 606
PkrI	GCNGC	1 cut(s)	93
PleI	GAGTC	1 cut(s)	119
PpsI	GAGTC	1 cut(s)	119
PspFI	CCCAGC	1 cut(s)	226
RseI	CAYNNNNRTG	3 cut(s)	405, 582, 588
SapI	GCTCTTC	1 cut(s)	396
SaqAI	TTAA	1 cut(s)	156
SatI	GCNGC	1 cut(s)	92
Sau3AI	GATC	2 cut(s)	81, 205
SchI	GAGTC	1 cut(s)	119
SduI	GDGCHC	3 cut(s)	123, 233, 666
SfaNI	GCATC	1 cut(s)	564
SfcI	CTRYAG	1 cut(s)	285
SgrAI	CRCCGGYG	1 cut(s)	11
SmiMI	CAYNNNNRTG	3 cut(s)	405, 582, 588
Sse9I	AATT	1 cut(s)	457
SsiI	CCGC	6 cut(s)	173, 251, 267, 315, 431, 626
SspMI	CTAG	1 cut(s)	276
StyI	CCWWGG	2 cut(s)	168, 339
TaaI	ACNGT	2 cut(s)	60, 691
TaiI	ACGT	3 cut(s)	201, 356, 554
TaqI	TCGA	4 cut(s)	123, 204, 518, 554
TasI	AATT	1 cut(s)	457
Tru1I	TTAA	1 cut(s)	156
Tru9I	TTAA	1 cut(s)	156
TscAI	CASTG	2 cut(s)	63, 673
TseFI	GTSAC	5 cut(s)	3, 334, 349, 374, 646
TseI	GCWGC	1 cut(s)	91
Tsp45I	GTSAC	5 cut(s)	3, 334, 349, 374, 646
TspDTI	ATGAA	2 cut(s)	86, 668
TspGWI	ACGGA	1 cut(s)	208
TspRI	CASTG	2 cut(s)	63, 673
XapI	RAATTY	1 cut(s)	457
XceI	RCATGY	2 cut(s)	587, 675
XmnI	GAANNNNTTC	2 cut(s)	200, 606
XspI	CTAG	1 cut(s)	276
ZraI	GACGTC	1 cut(s)	552

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.